README.md

pyTME illustration and benchmarks

The code and data in this repository were used in the following publication:

• Python Template Matching Engine): A fast, flexible, and multi-purpose template matching library for cryogenic electron microscopy data

Contents

• source: This directory contains source code to preprocess input maps and visualize results.
• plots: This directory holds the plots that were generated for the publication.
• templates: Contains structural templates utilized in the analyses.
• docker: Contains Docker-related files for setting up a containerized environment.
• pipelines: Snakemake pipeline for running the CPU benchmarks and sbatch files for GPU submission.