diff --git a/.doctrees/environment.pickle b/.doctrees/environment.pickle
index 6ff51f8..c3c2461 100644
Binary files a/.doctrees/environment.pickle and b/.doctrees/environment.pickle differ
diff --git a/.doctrees/index.doctree b/.doctrees/index.doctree
index b1ee722..07d8b4e 100644
Binary files a/.doctrees/index.doctree and b/.doctrees/index.doctree differ
diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt
index 026fa92..12f389c 100644
--- a/_sources/index.rst.txt
+++ b/_sources/index.rst.txt
@@ -11,18 +11,16 @@ LaSDI maps full-order PDE solutions to a latent space using autoencoders and lea
 By interpolating and solving the ODE system in the reduced latent space, fast and accurate ROM predictions can be made by feeding the predicted latent space dynamics into the decoder.
 It also supports parametric interpolation of latent dynamics according to uncertainties evaluated via Gaussian process.
 
+.. toctree::
+   :maxdepth: 2
+   :caption: Contents:
+
 References
 ===================
+
 * Fries, William D., Xiaolong He, and Youngsoo Choi. "LaSDI: Parametric latent space dynamics identification." Computer Methods in Applied Mechanics and Engineering 399 (2022): 115436.
 * He, Xiaolong, Youngsoo Choi, William D. Fries, Jonathan L. Belof, and Jiun-Shyan Chen. "gLaSDI: Parametric physics-informed greedy latent space dynamics identification." Journal of Computational Physics 489 (2023): 112267.
 * Tran, April, Xiaolong He, Daniel A. Messenger, Youngsoo Choi, and David M. Bortz. "Weak-form latent space dynamics identification." Computer Methods in Applied Mechanics and Engineering 427 (2024): 116998.
 * Park, Jun Sur Richard, Siu Wun Cheung, Youngsoo Choi, and Yeonjong Shin. "tLaSDI: Thermodynamics-informed latent space dynamics identification." arXiv preprint arXiv:2403.05848 (2024).
 * Bonneville, Christophe, Youngsoo Choi, Debojyoti Ghosh, and Jonathan L. Belof. "Gplasdi: Gaussian process-based interpretable latent space dynamics identification through deep autoencoder." Computer Methods in Applied Mechanics and Engineering 418 (2024): 116535.
 * He, Xiaolong, April Tran, David M. Bortz, and Youngsoo Choi. "Physics-informed active learning with simultaneous weak-form latent space dynamics identification." arXiv preprint arXiv:2407.00337 (2024).
-
-.. toctree::
-   :maxdepth: 2
-   :caption: Contents:
-
-   lasdi
-
diff --git a/index.html b/index.html
index a2be2bd..227d732 100644
--- a/index.html
+++ b/index.html
@@ -77,6 +77,15 @@ <h1>LaSDI documentation<a class="headerlink" href="#lasdi-documentation" title="
 LaSDI maps full-order PDE solutions to a latent space using autoencoders and learns the system of ODEs governing the latent space dynamics.
 By interpolating and solving the ODE system in the reduced latent space, fast and accurate ROM predictions can be made by feeding the predicted latent space dynamics into the decoder.
 It also supports parametric interpolation of latent dynamics according to uncertainties evaluated via Gaussian process.</p>
+<div class="toctree-wrapper compound">
+<p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="autoapi/index.html">API Reference</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="autoapi/lasdi/index.html">lasdi</a></li>
+</ul>
+</li>
+</ul>
+</div>
 </section>
 <section id="references">
 <h1>References<a class="headerlink" href="#references" title="Permalink to this heading"></a></h1>
@@ -88,15 +97,6 @@ <h1>References<a class="headerlink" href="#references" title="Permalink to this
 <li><p>Bonneville, Christophe, Youngsoo Choi, Debojyoti Ghosh, and Jonathan L. Belof. “Gplasdi: Gaussian process-based interpretable latent space dynamics identification through deep autoencoder.” Computer Methods in Applied Mechanics and Engineering 418 (2024): 116535.</p></li>
 <li><p>He, Xiaolong, April Tran, David M. Bortz, and Youngsoo Choi. “Physics-informed active learning with simultaneous weak-form latent space dynamics identification.” arXiv preprint arXiv:2407.00337 (2024).</p></li>
 </ul>
-<div class="toctree-wrapper compound">
-<p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="autoapi/index.html">API Reference</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="autoapi/lasdi/index.html">lasdi</a></li>
-</ul>
-</li>
-</ul>
-</div>
 </section>
 
 
diff --git a/searchindex.js b/searchindex.js
index e1cacb6..f49e3f9 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["autoapi/index", "autoapi/lasdi/enums/index", "autoapi/lasdi/fd/index", "autoapi/lasdi/gp/index", "autoapi/lasdi/gplasdi/index", "autoapi/lasdi/index", "autoapi/lasdi/inputs/index", "autoapi/lasdi/latent_dynamics/index", "autoapi/lasdi/latent_dynamics/sindy/index", "autoapi/lasdi/latent_space/index", "autoapi/lasdi/param/index", "autoapi/lasdi/physics/burgers1d/index", "autoapi/lasdi/physics/index", "autoapi/lasdi/postprocess/index", "autoapi/lasdi/timing/index", "autoapi/lasdi/workflow/index", "index"], "filenames": ["autoapi/index.rst", "autoapi/lasdi/enums/index.rst", "autoapi/lasdi/fd/index.rst", "autoapi/lasdi/gp/index.rst", "autoapi/lasdi/gplasdi/index.rst", "autoapi/lasdi/index.rst", "autoapi/lasdi/inputs/index.rst", "autoapi/lasdi/latent_dynamics/index.rst", "autoapi/lasdi/latent_dynamics/sindy/index.rst", "autoapi/lasdi/latent_space/index.rst", "autoapi/lasdi/param/index.rst", "autoapi/lasdi/physics/burgers1d/index.rst", "autoapi/lasdi/physics/index.rst", "autoapi/lasdi/postprocess/index.rst", "autoapi/lasdi/timing/index.rst", "autoapi/lasdi/workflow/index.rst", "index.rst"], "titles": ["API Reference", "lasdi.enums", "lasdi.fd", "lasdi.gp", "lasdi.gplasdi", "lasdi", "lasdi.inputs", "lasdi.latent_dynamics", "lasdi.latent_dynamics.sindy", "lasdi.latent_space", "lasdi.param", "lasdi.physics.burgers1d", "lasdi.physics", "lasdi.postprocess", "lasdi.timing", "lasdi.workflow", "LaSDI documentation"], "terms": {"thi": [0, 1], "page": 0, "contain": [0, 3], "auto": 0, "gener": [0, 1, 3, 11, 12], "document": 0, "1": [0, 1, 2, 9, 11, 12, 13], "lasdi": 0, "latent_dynam": [0, 4, 5], "sindi": [0, 3, 7, 13], "physic": [0, 4, 5, 9, 10, 13, 15, 16], "burgers1d": [0, 12, 15], "enum": [0, 5], "fd": [0, 5, 8], "gp": [0, 5], "gplasdi": [0, 5, 15, 16], "input": [0, 5], "latent_spac": [0, 5], "param": [0, 3, 5, 11, 12, 13], "postprocess": [0, 5], "time": [0, 5, 7, 8], "workflow": [0, 5], "creat": 0, "sphinx": 0, "autoapi": 0, "nextstep": 1, "base": [1, 2, 8, 9, 11, 12, 16], "enumer": 1, "deriv": [1, 8], "from": [1, 3, 6, 11], "defin": 1, "new": 1, "train": [1, 3, 4, 8], "picksampl": 1, "2": [1, 2, 11, 12], "runsampl": 1, "3": [1, 2, 8, 11, 12], "collectsampl": 1, "4": [1, 2], "result": 1, "unexecut": 1, "success": 1, "fail": 1, "complet": 1, "stencil": 2, "leftbdrdepth": 2, "0": [2, 4, 9, 10, 11, 12, 13], "leftbdrwidth": 2, "leftbdrstencil": 2, "leftbdrnorm": 2, "interiorstencil": 2, "interiorindex": 2, "getoper": 2, "nx": [2, 11], "period": 2, "fals": [2, 6, 7, 8, 9, 12, 15], "convert": [2, 10], "scipy_coo": 2, "sbp12": [2, 8], "5": [2, 13], "sbp24": [2, 8], "6": [2, 13], "sbp36": [2, 8], "7": 2, "8": 2, "9": 2, "sbp48": [2, 8], "10": [2, 13], "11": 2, "12": 2, "x1": 2, "x2": 2, "x3": 2, "fddict": 2, "fit_gp": 3, "x": [3, 9, 10], "y": 3, "each": [3, 8, 10], "given": [3, 7, 8, 12], "interpol": [3, 16], "dataset": [3, 8], "n_train": [3, 7, 10], "n_param": [3, 10], "numpi": [3, 4, 7, 8, 10, 11, 12], "2d": [3, 4, 7, 8, 10, 11, 12], "arrai": [3, 4, 10, 11, 12], "n_coef": 3, "we": 3, "assum": [3, 8, 11, 12], "target": 3, "coeffici": [3, 7], "i": [3, 6, 7, 8, 10, 15, 16], "independ": 3, "other": 3, "gp_dictionnari": [3, 4, 13], "sklearn": 3, "object": 3, "eval_gp": 3, "param_grid": [3, 4, 9, 10], "comput": [3, 4, 7, 8, 11, 13, 16], "predict": [3, 16], "mean": 3, "standard": [3, 4], "deviat": [3, 4], "point": [3, 7, 8], "paramet": [3, 4, 10, 12, 13], "space": [3, 4, 9, 10, 15, 16], "grid": [3, 4, 10], "sample_coef": 3, "n_sampl": [3, 4, 13], "sampl": [3, 7], "set": [3, 7], "od": [3, 8, 16], "one": [3, 6, 7], "coef_sampl": 3, "list": [3, 4, 6, 10], "length": 3, "where": 3, "term": [3, 8], "matrix": 3, "distribut": 3, "average_rom": 4, "autoencod": [4, 9, 13, 15, 16], "gp_dictionari": 4, "sample_rom": 4, "collect": 4, "rom": [4, 16], "trajectori": 4, "gaussian": [4, 16], "process": [4, 16], "regressor": 4, "size": [4, 8, 10, 12], "n_test": [4, 10], "integ": 4, "assert": 4, "len": 4, "shape": [4, 7, 8, 11, 12], "output": [4, 6, 7, 8, 9, 10], "np": 4, "nt": [4, 7, 8, 11, 12], "n_z": [4, 9], "get_fom_max_std": 4, "zi": 4, "maximum": [4, 13], "accross": 4, "find": [4, 6], "correspond": [4, 6, 8, 10], "locat": 4, "optimizer_to": 4, "optim": 4, "devic": 4, "bayesianglasdi": 4, "param_spac": 4, "config": [4, 8, 9, 10, 15], "x_train": 4, "x_test": [4, 13], "timer": [4, 14], "lr": 4, "n_iter": 4, "max_it": 4, "max_greedy_it": 4, "ld_weight": 4, "coef_weight": 4, "mse": [4, 8], "path_checkpoint": 4, "path_result": 4, "best_loss": 4, "best_coef": 4, "none": [4, 6, 8, 9, 10, 11, 12, 15], "restart_it": 4, "get_new_sample_point": 4, "export": [4, 7, 8, 9, 10, 11, 12, 14], "load": [4, 7, 9, 10, 14], "dict_": [4, 6, 7, 9, 10, 14], "verbos": 6, "inputpars": 6, "dict": [6, 10], "name": [6, 14], "getinput": 6, "kei": 6, "fallback": 6, "datatyp": 6, "valu": [6, 9, 13], "If": 6, "specifi": [6, 8], "do": 6, "exist": 6, "us": [6, 16], "doe": 6, "return": 6, "an": 6, "error": [6, 13], "enforc": 6, "ha": 6, "right": 6, "getdictfromlist": 6, "list_": 6, "inputdict": 6, "get": 6, "val": 6, "note": 6, "onli": [6, 8, 15], "first": 6, "item": 6, "even": 6, "more": 6, "than": 6, "latentdynam": [7, 8], "dim_": 7, "nt_": 7, "dim": [7, 8, 11, 12], "ncoef": [7, 8], "coef": [7, 8], "calibr": [7, 8], "z": [7, 8], "dt": [7, 8, 11, 12], "compute_loss": [7, 8], "true": [7, 8, 12, 13], "latent": [7, 9, 15, 16], "dynam": [7, 16], "loss": 7, "seri": 7, "encod": [7, 8, 9], "3d": [7, 11, 12], "tensor": [7, 8], "time_dim": [7, 8], "space_dim": [7, 8, 9, 11, 12], "simul": [7, 8], "z0": [7, 8, 9], "t_grid": [7, 8, 11, 12], "integr": [7, 8], "initi": [7, 8, 9, 15], "condit": [7, 8, 9], "coefs_sampl": 7, "z0_sampl": 7, "fd_type": 8, "fd_oper": 8, "parser": [8, 10, 11, 12, 15], "string": 8, "finit": 8, "differ": 8, "scheme": 8, "summat": 8, "part": 8, "1st": 8, "2nd": 8, "boundari": 8, "interior": 8, "order": [8, 16], "oper": 8, "4th": 8, "3rd": 8, "6th": 8, "8th": 8, "coef_norm_ord": 8, "loop": 8, "over": 8, "all": 8, "case": 8, "dimens": [8, 10, 11, 12], "compute_time_deriv": 8, "build": 8, "linear": 8, "The": [8, 10], "ar": 8, "through": [8, 16], "timestep": 8, "uniform": 8, "scalar": 8, "dzdt": 8, "same": 8, "system": [8, 16], "u0": [8, 9, 11], "act_dict": 9, "initial_condition_lat": 9, "multilayerperceptron": 9, "layer_s": 9, "act_typ": 9, "sigmoid": 9, "reshape_index": 9, "reshape_shap": 9, "threshold": 9, "num_head": 9, "torch": 9, "nn": 9, "n_layer": 9, "fc": 9, "use_multihead": 9, "forward": 9, "apply_attent": 9, "act_idx": 9, "init_weight": 9, "qgrid_siz": [9, 11, 12], "hidden_unit": 9, "decod": [9, 16], "get_1dspace_from_list": 10, "create_uniform_1dspac": 10, "getparam1dspac": 10, "parameterspac": 10, "param_list": 10, "param_nam": [10, 11, 12, 15], "train_spac": 10, "test_spac": 10, "n_init": [10, 13], "test_grid_s": 10, "test_meshgrid": 10, "test_space_typ": 10, "createinitialtrainspac": 10, "createtestgridspac": 10, "getparamet": 10, "param_vector": 10, "vector": 10, "take": 10, "solv": [10, 11, 12, 16], "initial_condit": [10, 11, 12], "createhypermeshgrid": 10, "param_rang": 10, "1d": [10, 11, 12], "equal": 10, "number": 10, "paramspac": 10, "tupl": 10, "nd": [10, 11, 12], "createhypergridspac": 10, "mesh_grid": 10, "appendtrainspac": 10, "cfg": [11, 12], "a_idx": 11, "w_idx": 11, "qdim": [11, 12], "offlin": [11, 12], "grid_siz": [11, 12], "higher": [11, 12], "xmin": 11, "xmax": 11, "dx": 11, "tmax": 11, "x_grid": [11, 12], "maxk": 11, "convergence_threshold": 11, "residu": [11, 12], "xhist": [11, 12], "residual_burg": 11, "un": 11, "uw": 11, "c": 11, "idxn1": 11, "burger": 11, "equat": 11, "data": 11, "http": 11, "github": 11, "com": 11, "llnl": 11, "glasdi": [11, 16], "jacobian": 11, "u": 11, "solver": 11, "main": [11, 15], "generate_solut": 12, "solut": [12, 16], "must": 12, "match": 12, "requir": 12, "specif": 12, "offlinefom": 12, "compute_error": 13, "x_pred": 13, "rel": 13, "plot_predict": 13, "scale": 13, "plot_gp2d": 13, "p1_mesh": 13, "p2_mesh": 13, "gp_mean": 13, "gp_std": 13, "param_train": 13, "param_label": 13, "p1": 13, "p2": 13, "plot_shap": 13, "figsiz": 13, "15": 13, "13": 13, "refin": 13, "cm": 13, "plt": 13, "jet": 13, "margin": 13, "05": 13, "heatmap2d": 13, "p1_grid": 13, "p2_grid": 13, "titl": 13, "call": 14, "start": 14, "end": 14, "print": 14, "trainer_dict": 15, "latent_dict": 15, "ld_dict": 15, "physics_dict": 15, "step": 15, "trainer": 15, "next_step": 15, "use_restart": 15, "initialize_train": 15, "restart_fil": 15, "class": 15, "model": 15, "accord": [15, 16], "file": 15, "current": 15, "avail": 15, "initialize_latent_spac": 15, "ae": 15, "initialize_phys": 15, "fom": 15, "pick_sampl": 15, "run_sampl": 15, "collect_sampl": 15, "light": 16, "weight": 16, "python": 16, "packag": 16, "identif": 16, "map": 16, "full": 16, "pde": 16, "learn": 16, "govern": 16, "By": 16, "reduc": 16, "fast": 16, "accur": 16, "can": 16, "made": 16, "feed": 16, "It": 16, "also": 16, "support": 16, "parametr": 16, "uncertainti": 16, "evalu": 16, "via": 16, "fri": 16, "william": 16, "d": 16, "xiaolong": 16, "he": 16, "youngsoo": 16, "choi": 16, "method": 16, "appli": 16, "mechan": 16, "engin": 16, "399": 16, "2022": 16, "115436": 16, "jonathan": 16, "l": 16, "belof": 16, "jiun": 16, "shyan": 16, "chen": 16, "inform": 16, "greedi": 16, "journal": 16, "489": 16, "2023": 16, "112267": 16, "tran": 16, "april": 16, "daniel": 16, "A": 16, "messeng": 16, "david": 16, "m": 16, "bortz": 16, "weak": 16, "form": 16, "427": 16, "2024": 16, "116998": 16, "park": 16, "jun": 16, "sur": 16, "richard": 16, "siu": 16, "wun": 16, "cheung": 16, "yeonjong": 16, "shin": 16, "tlasdi": 16, "thermodynam": 16, "arxiv": 16, "preprint": 16, "2403": 16, "05848": 16, "bonnevil": 16, "christoph": 16, "debojyoti": 16, "ghosh": 16, "interpret": 16, "deep": 16, "418": 16, "116535": 16, "activ": 16, "simultan": 16, "2407": 16, "00337": 16, "api": 16}, "objects": {"": [[5, 0, 0, "-", "lasdi"]], "lasdi": [[1, 0, 0, "-", "enums"], [2, 0, 0, "-", "fd"], [3, 0, 0, "-", "gp"], [4, 0, 0, "-", "gplasdi"], [6, 0, 0, "-", "inputs"], [7, 0, 0, "-", "latent_dynamics"], [9, 0, 0, "-", "latent_space"], [10, 0, 0, "-", "param"], [12, 0, 0, "-", "physics"], [13, 0, 0, "-", "postprocess"], [14, 0, 0, "-", "timing"], [15, 0, 0, "-", "workflow"]], "lasdi.enums": [[1, 1, 1, "", "NextStep"], [1, 1, 1, "", "Result"]], "lasdi.enums.NextStep": [[1, 2, 1, "", "CollectSample"], [1, 2, 1, "", "PickSample"], [1, 2, 1, "", "RunSample"], [1, 2, 1, "", "Train"]], "lasdi.enums.Result": [[1, 2, 1, "", "Complete"], [1, 2, 1, "", "Fail"], [1, 2, 1, "", "Success"], [1, 2, 1, "", "Unexecuted"]], "lasdi.fd": [[2, 3, 1, "", "FDdict"], [2, 1, 1, "", "SBP12"], [2, 1, 1, "", "SBP24"], [2, 1, 1, "", "SBP36"], [2, 1, 1, "", "SBP48"], [2, 1, 1, "", "Stencil"]], "lasdi.fd.SBP12": [[2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"]], "lasdi.fd.SBP24": [[2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"]], "lasdi.fd.SBP36": [[2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"]], "lasdi.fd.SBP48": [[2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"], [2, 2, 1, "", "x1"], [2, 2, 1, "", "x2"], [2, 2, 1, "", "x3"]], "lasdi.fd.Stencil": [[2, 4, 1, "", "convert"], [2, 4, 1, "", "getOperators"], [2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"]], "lasdi.gp": [[3, 5, 1, "", "eval_gp"], [3, 5, 1, "", "fit_gps"], [3, 5, 1, "", "sample_coefs"]], "lasdi.gplasdi": [[4, 1, 1, "", "BayesianGLaSDI"], [4, 5, 1, "", "average_rom"], [4, 5, 1, "", "get_fom_max_std"], [4, 5, 1, "", "optimizer_to"], [4, 5, 1, "", "sample_roms"]], "lasdi.gplasdi.BayesianGLaSDI": [[4, 2, 1, "", "MSE"], [4, 2, 1, "", "X_test"], [4, 2, 1, "", "X_train"], [4, 2, 1, "", "autoencoder"], [4, 2, 1, "", "best_coefs"], [4, 2, 1, "", "best_loss"], [4, 2, 1, "", "coef_weight"], [4, 2, 1, "", "device"], [4, 4, 1, "", "export"], [4, 4, 1, "", "get_new_sample_point"], [4, 2, 1, "", "latent_dynamics"], [4, 2, 1, "", "ld_weight"], [4, 4, 1, "", "load"], [4, 2, 1, "", "lr"], [4, 2, 1, "", "max_greedy_iter"], [4, 2, 1, "", "max_iter"], [4, 2, 1, "", "n_iter"], [4, 2, 1, "", "n_samples"], [4, 2, 1, "", "optimizer"], [4, 2, 1, "", "param_space"], [4, 2, 1, "", "path_checkpoint"], [4, 2, 1, "", "path_results"], [4, 2, 1, "", "physics"], [4, 2, 1, "", "restart_iter"], [4, 2, 1, "", "timer"], [4, 4, 1, "", "train"]], "lasdi.inputs": [[6, 1, 1, "", "InputParser"], [6, 5, 1, "", "getDictFromList"], [6, 3, 1, "", "verbose"]], "lasdi.inputs.InputParser": [[6, 2, 1, "", "dict_"], [6, 4, 1, "", "getInput"], [6, 2, 1, "", "name"]], "lasdi.latent_dynamics": [[7, 1, 1, "", "LatentDynamics"], [8, 0, 0, "-", "sindy"]], "lasdi.latent_dynamics.LatentDynamics": [[7, 4, 1, "", "calibrate"], [7, 2, 1, "", "coefs"], [7, 2, 1, "", "dim"], [7, 4, 1, "", "export"], [7, 4, 1, "", "load"], [7, 2, 1, "", "ncoefs"], [7, 2, 1, "", "nt"], [7, 4, 1, "", "sample"], [7, 4, 1, "", "simulate"]], "lasdi.latent_dynamics.sindy": [[8, 1, 1, "", "SINDy"]], "lasdi.latent_dynamics.sindy.SINDy": [[8, 2, 1, "", "MSE"], [8, 4, 1, "", "calibrate"], [8, 2, 1, "", "coef_norm_order"], [8, 4, 1, "", "compute_time_derivative"], [8, 4, 1, "", "export"], [8, 2, 1, "", "fd"], [8, 2, 1, "", "fd_oper"], [8, 2, 1, "", "fd_type"], [8, 2, 1, "", "ncoefs"], [8, 2, 1, "", "parser"], [8, 4, 1, "", "simulate"]], "lasdi.latent_space": [[9, 1, 1, "", "Autoencoder"], [9, 1, 1, "", "MultiLayerPerceptron"], [9, 3, 1, "", "act_dict"], [9, 5, 1, "", "initial_condition_latent"]], "lasdi.latent_space.Autoencoder": [[9, 2, 1, "", "act_type"], [9, 2, 1, "", "decoder"], [9, 2, 1, "", "encoder"], [9, 4, 1, "", "export"], [9, 4, 1, "", "forward"], [9, 2, 1, "", "hidden_units"], [9, 2, 1, "", "layer_sizes"], [9, 4, 1, "", "load"], [9, 2, 1, "", "n_z"], [9, 2, 1, "", "num_heads"], [9, 2, 1, "", "qgrid_size"], [9, 2, 1, "", "space_dim"], [9, 2, 1, "", "threshold"], [9, 2, 1, "", "value"]], "lasdi.latent_space.MultiLayerPerceptron": [[9, 2, 1, "", "act_type"], [9, 4, 1, "", "apply_attention"], [9, 2, 1, "", "fcs"], [9, 4, 1, "", "forward"], [9, 4, 1, "", "init_weight"], [9, 2, 1, "", "layer_sizes"], [9, 2, 1, "", "n_layers"], [9, 2, 1, "", "reshape_index"], [9, 2, 1, "", "reshape_shape"], [9, 2, 1, "", "use_multihead"]], "lasdi.param": [[10, 1, 1, "", "ParameterSpace"], [10, 5, 1, "", "create_uniform_1dspace"], [10, 3, 1, "", "getParam1DSpace"], [10, 5, 1, "", "get_1dspace_from_list"]], "lasdi.param.ParameterSpace": [[10, 4, 1, "", "appendTrainSpace"], [10, 4, 1, "", "createHyperGridSpace"], [10, 4, 1, "", "createHyperMeshGrid"], [10, 4, 1, "", "createInitialTrainSpace"], [10, 4, 1, "", "createTestGridSpace"], [10, 4, 1, "", "export"], [10, 4, 1, "", "getParameter"], [10, 4, 1, "", "load"], [10, 2, 1, "", "n_init"], [10, 2, 1, "", "n_param"], [10, 4, 1, "", "n_test"], [10, 4, 1, "", "n_train"], [10, 2, 1, "", "param_list"], [10, 2, 1, "", "param_name"], [10, 2, 1, "", "parser"], [10, 2, 1, "", "test_grid_sizes"], [10, 2, 1, "", "test_meshgrid"], [10, 2, 1, "", "test_space"], [10, 2, 1, "", "test_space_type"], [10, 2, 1, "", "train_space"]], "lasdi.physics": [[12, 1, 1, "", "OfflineFOM"], [12, 1, 1, "", "Physics"], [11, 0, 0, "-", "burgers1d"]], "lasdi.physics.OfflineFOM": [[12, 2, 1, "", "dim"], [12, 2, 1, "", "dt"], [12, 4, 1, "", "export"], [12, 4, 1, "", "generate_solutions"], [12, 2, 1, "", "grid_size"], [12, 2, 1, "", "nt"], [12, 2, 1, "", "offline"], [12, 2, 1, "", "parser"], [12, 2, 1, "", "qdim"], [12, 2, 1, "", "qgrid_size"], [12, 2, 1, "", "t_grid"], [12, 2, 1, "", "x_grid"]], "lasdi.physics.Physics": [[12, 2, 1, "", "dim"], [12, 2, 1, "", "dt"], [12, 4, 1, "", "export"], [12, 4, 1, "", "generate_solutions"], [12, 2, 1, "", "grid_size"], [12, 4, 1, "", "initial_condition"], [12, 2, 1, "", "nt"], [12, 2, 1, "", "offline"], [12, 2, 1, "", "param_name"], [12, 2, 1, "", "qdim"], [12, 2, 1, "", "qgrid_size"], [12, 4, 1, "", "residual"], [12, 4, 1, "", "solve"], [12, 2, 1, "", "t_grid"], [12, 2, 1, "", "x_grid"]], "lasdi.physics.burgers1d": [[11, 1, 1, "", "Burgers1D"], [11, 5, 1, "", "jacobian"], [11, 5, 1, "", "main"], [11, 5, 1, "", "residual_burgers"], [11, 5, 1, "", "solver"]], "lasdi.physics.burgers1d.Burgers1D": [[11, 2, 1, "", "a_idx"], [11, 2, 1, "", "convergence_threshold"], [11, 2, 1, "", "dim"], [11, 2, 1, "", "dt"], [11, 2, 1, "", "dx"], [11, 4, 1, "", "export"], [11, 2, 1, "", "grid_size"], [11, 4, 1, "", "initial_condition"], [11, 2, 1, "", "maxk"], [11, 2, 1, "", "nt"], [11, 2, 1, "", "offline"], [11, 2, 1, "", "parser"], [11, 2, 1, "", "qdim"], [11, 2, 1, "", "qgrid_size"], [11, 4, 1, "", "residual"], [11, 4, 1, "", "solve"], [11, 2, 1, "", "t_grid"], [11, 2, 1, "", "tmax"], [11, 2, 1, "", "w_idx"], [11, 2, 1, "", "x_grid"], [11, 2, 1, "", "xmax"], [11, 2, 1, "", "xmin"]], "lasdi.postprocess": [[13, 5, 1, "", "compute_errors"], [13, 5, 1, "", "heatmap2d"], [13, 5, 1, "", "plot_gp2d"], [13, 5, 1, "", "plot_prediction"]], "lasdi.timing": [[14, 1, 1, "", "Timer"]], "lasdi.timing.Timer": [[14, 2, 1, "", "calls"], [14, 4, 1, "", "end"], [14, 4, 1, "", "export"], [14, 4, 1, "", "load"], [14, 2, 1, "", "names"], [14, 4, 1, "", "print"], [14, 4, 1, "", "start"], [14, 2, 1, "", "starts"], [14, 2, 1, "", "times"]], "lasdi.workflow": [[15, 5, 1, "", "collect_samples"], [15, 5, 1, "", "initialize_latent_space"], [15, 5, 1, "", "initialize_physics"], [15, 5, 1, "", "initialize_trainer"], [15, 3, 1, "", "latent_dict"], [15, 3, 1, "", "ld_dict"], [15, 5, 1, "", "main"], [15, 3, 1, "", "parser"], [15, 3, 1, "", "physics_dict"], [15, 5, 1, "", "pick_samples"], [15, 5, 1, "", "run_samples"], [15, 5, 1, "", "step"], [15, 3, 1, "", "trainer_dict"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:attribute", "3": "py:data", "4": "py:method", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "attribute", "Python attribute"], "3": ["py", "data", "Python data"], "4": ["py", "method", "Python method"], "5": ["py", "function", "Python function"]}, "titleterms": {"api": 0, "refer": [0, 16], "lasdi": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16], "enum": 1, "class": [1, 2, 4, 6, 7, 8, 9, 10, 11, 12, 14], "modul": [1, 2, 3, 4, 6, 8, 9, 10, 11, 13, 14, 15], "content": [1, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16], "fd": 2, "attribut": [2, 6, 9, 10, 15], "gp": 3, "function": [3, 4, 6, 9, 10, 11, 13, 15], "gplasdi": 4, "subpackag": 5, "submodul": [5, 7, 12], "input": 6, "latent_dynam": [7, 8], "packag": [7, 12], "sindi": 8, "latent_spac": 9, "param": 10, "physic": [11, 12], "burgers1d": 11, "postprocess": 13, "time": 14, "workflow": 15, "document": 16}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx": 58}, "alltitles": {"API Reference": [[0, "api-reference"]], "lasdi.enums": [[1, "module-lasdi.enums"]], "Classes": [[1, "classes"], [2, "classes"], [4, "classes"], [6, "classes"], [7, "classes"], [8, "classes"], [9, "classes"], [10, "classes"], [11, "classes"], [12, "classes"], [14, "classes"]], "Module Contents": [[1, "module-contents"], [2, "module-contents"], [3, "module-contents"], [4, "module-contents"], [6, "module-contents"], [8, "module-contents"], [9, "module-contents"], [10, "module-contents"], [11, "module-contents"], [13, "module-contents"], [14, "module-contents"], [15, "module-contents"]], "lasdi.fd": [[2, "module-lasdi.fd"]], "Attributes": [[2, "attributes"], [6, "attributes"], [9, "attributes"], [10, "attributes"], [15, "attributes"]], "lasdi.gp": [[3, "module-lasdi.gp"]], "Functions": [[3, "functions"], [4, "functions"], [6, "functions"], [9, "functions"], [10, "functions"], [11, "functions"], [13, "functions"], [15, "functions"]], "lasdi.gplasdi": [[4, "module-lasdi.gplasdi"]], "lasdi": [[5, "module-lasdi"]], "Subpackages": [[5, "subpackages"]], "Submodules": [[5, "submodules"], [7, "submodules"], [12, "submodules"]], "lasdi.inputs": [[6, "module-lasdi.inputs"]], "lasdi.latent_dynamics": [[7, "module-lasdi.latent_dynamics"]], "Package Contents": [[7, "package-contents"], [12, "package-contents"]], "lasdi.latent_dynamics.sindy": [[8, "module-lasdi.latent_dynamics.sindy"]], "lasdi.latent_space": [[9, "module-lasdi.latent_space"]], "lasdi.param": [[10, "module-lasdi.param"]], "lasdi.physics.burgers1d": [[11, "module-lasdi.physics.burgers1d"]], "lasdi.physics": [[12, "module-lasdi.physics"]], "lasdi.postprocess": [[13, "module-lasdi.postprocess"]], "lasdi.timing": [[14, "module-lasdi.timing"]], "lasdi.workflow": [[15, "module-lasdi.workflow"]], "LaSDI documentation": [[16, "lasdi-documentation"]], "References": [[16, "references"]], "Contents:": [[16, null]]}, "indexentries": {"collectsample (lasdi.enums.nextstep attribute)": [[1, "lasdi.enums.NextStep.CollectSample"]], "complete (lasdi.enums.result attribute)": [[1, "lasdi.enums.Result.Complete"]], "fail (lasdi.enums.result attribute)": [[1, "lasdi.enums.Result.Fail"]], "nextstep (class in lasdi.enums)": [[1, "lasdi.enums.NextStep"]], "picksample (lasdi.enums.nextstep attribute)": [[1, "lasdi.enums.NextStep.PickSample"]], "result (class in lasdi.enums)": [[1, "lasdi.enums.Result"]], "runsample (lasdi.enums.nextstep attribute)": [[1, "lasdi.enums.NextStep.RunSample"]], "success (lasdi.enums.result attribute)": [[1, "lasdi.enums.Result.Success"]], "train (lasdi.enums.nextstep attribute)": [[1, "lasdi.enums.NextStep.Train"]], "unexecuted (lasdi.enums.result attribute)": [[1, "lasdi.enums.Result.Unexecuted"]], "lasdi.enums": [[1, "module-lasdi.enums"]], "module": [[1, "module-lasdi.enums"], [2, "module-lasdi.fd"], [3, "module-lasdi.gp"], [4, "module-lasdi.gplasdi"], [5, "module-lasdi"], [6, "module-lasdi.inputs"], [7, "module-lasdi.latent_dynamics"], [8, "module-lasdi.latent_dynamics.sindy"], [9, "module-lasdi.latent_space"], [10, "module-lasdi.param"], [11, "module-lasdi.physics.burgers1d"], [12, "module-lasdi.physics"], [13, "module-lasdi.postprocess"], [14, "module-lasdi.timing"], [15, "module-lasdi.workflow"]], "fddict (in module lasdi.fd)": [[2, "lasdi.fd.FDdict"]], "sbp12 (class in lasdi.fd)": [[2, "lasdi.fd.SBP12"]], "sbp24 (class in lasdi.fd)": [[2, "lasdi.fd.SBP24"]], "sbp36 (class in lasdi.fd)": [[2, "lasdi.fd.SBP36"]], "sbp48 (class in lasdi.fd)": [[2, "lasdi.fd.SBP48"]], "stencil (class in lasdi.fd)": [[2, "lasdi.fd.Stencil"]], "convert() (lasdi.fd.stencil method)": [[2, "lasdi.fd.Stencil.convert"]], "getoperators() (lasdi.fd.stencil method)": [[2, "lasdi.fd.Stencil.getOperators"]], "interiorindexes (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.interiorIndexes"]], "interiorindexes (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.interiorIndexes"]], "interiorindexes (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.interiorIndexes"]], "interiorindexes (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.interiorIndexes"]], "interiorindexes (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.interiorIndexes"]], "interiorstencils (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.interiorStencils"]], "interiorstencils (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.interiorStencils"]], "interiorstencils (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.interiorStencils"]], "interiorstencils (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.interiorStencils"]], "interiorstencils (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.interiorStencils"]], "lasdi.fd": [[2, "module-lasdi.fd"]], "leftbdrdepth (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.leftBdrDepth"]], "leftbdrdepth (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.leftBdrDepth"]], "leftbdrdepth (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.leftBdrDepth"]], "leftbdrdepth (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.leftBdrDepth"]], "leftbdrdepth (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.leftBdrDepth"]], "leftbdrnorm (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.leftBdrNorm"]], "leftbdrnorm (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.leftBdrNorm"]], "leftbdrnorm (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.leftBdrNorm"]], "leftbdrnorm (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.leftBdrNorm"]], "leftbdrnorm (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.leftBdrNorm"]], "leftbdrstencils (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.leftBdrStencils"]], "leftbdrstencils (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.leftBdrStencils"]], "leftbdrstencils (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.leftBdrStencils"]], "leftbdrstencils (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.leftBdrStencils"]], "leftbdrstencils (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.leftBdrStencils"]], "leftbdrwidth (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.leftBdrWidth"]], "leftbdrwidth (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.leftBdrWidth"]], "leftbdrwidth (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.leftBdrWidth"]], "leftbdrwidth (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.leftBdrWidth"]], "leftbdrwidth (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.leftBdrWidth"]], "x1 (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.x1"]], "x2 (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.x2"]], "x3 (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.x3"]], "eval_gp() (in module lasdi.gp)": [[3, "lasdi.gp.eval_gp"]], "fit_gps() (in module lasdi.gp)": [[3, "lasdi.gp.fit_gps"]], "lasdi.gp": [[3, "module-lasdi.gp"]], "sample_coefs() (in module lasdi.gp)": [[3, "lasdi.gp.sample_coefs"]], "bayesianglasdi (class in lasdi.gplasdi)": [[4, "lasdi.gplasdi.BayesianGLaSDI"]], "mse (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.MSE"]], "x_test (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.X_test"]], "x_train (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.X_train"]], "autoencoder (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.autoencoder"]], "average_rom() (in module lasdi.gplasdi)": [[4, "lasdi.gplasdi.average_rom"]], "best_coefs (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.best_coefs"]], "best_loss (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.best_loss"]], "coef_weight (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.coef_weight"]], "device (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.device"]], "export() (lasdi.gplasdi.bayesianglasdi method)": [[4, "lasdi.gplasdi.BayesianGLaSDI.export"]], "get_fom_max_std() (in module lasdi.gplasdi)": [[4, "lasdi.gplasdi.get_fom_max_std"]], "get_new_sample_point() (lasdi.gplasdi.bayesianglasdi method)": [[4, "lasdi.gplasdi.BayesianGLaSDI.get_new_sample_point"]], "lasdi.gplasdi": [[4, "module-lasdi.gplasdi"]], "latent_dynamics (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.latent_dynamics"]], "ld_weight (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.ld_weight"]], "load() (lasdi.gplasdi.bayesianglasdi method)": [[4, "lasdi.gplasdi.BayesianGLaSDI.load"]], "lr (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.lr"]], "max_greedy_iter (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.max_greedy_iter"]], "max_iter (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.max_iter"]], "n_iter (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.n_iter"]], "n_samples (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.n_samples"]], "optimizer (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.optimizer"]], "optimizer_to() (in module lasdi.gplasdi)": [[4, "lasdi.gplasdi.optimizer_to"]], "param_space (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.param_space"]], "path_checkpoint (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.path_checkpoint"]], "path_results (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.path_results"]], "physics (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.physics"]], "restart_iter (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.restart_iter"]], "sample_roms() (in module lasdi.gplasdi)": [[4, "lasdi.gplasdi.sample_roms"]], "timer (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.timer"]], "train() (lasdi.gplasdi.bayesianglasdi method)": [[4, "lasdi.gplasdi.BayesianGLaSDI.train"]], "lasdi": [[5, "module-lasdi"]], "inputparser (class in lasdi.inputs)": [[6, "lasdi.inputs.InputParser"]], "dict_ (lasdi.inputs.inputparser attribute)": [[6, "lasdi.inputs.InputParser.dict_"]], "getdictfromlist() (in module lasdi.inputs)": [[6, "lasdi.inputs.getDictFromList"]], "getinput() (lasdi.inputs.inputparser method)": [[6, "lasdi.inputs.InputParser.getInput"]], "lasdi.inputs": [[6, "module-lasdi.inputs"]], "name (lasdi.inputs.inputparser attribute)": [[6, "lasdi.inputs.InputParser.name"]], "verbose (in module lasdi.inputs)": [[6, "lasdi.inputs.verbose"]], "latentdynamics (class in lasdi.latent_dynamics)": [[7, "lasdi.latent_dynamics.LatentDynamics"]], "calibrate() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.calibrate"]], "coefs (lasdi.latent_dynamics.latentdynamics attribute)": [[7, "lasdi.latent_dynamics.LatentDynamics.coefs"]], "dim (lasdi.latent_dynamics.latentdynamics attribute)": [[7, "lasdi.latent_dynamics.LatentDynamics.dim"]], "export() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.export"]], "lasdi.latent_dynamics": [[7, "module-lasdi.latent_dynamics"]], "load() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.load"]], "ncoefs (lasdi.latent_dynamics.latentdynamics attribute)": [[7, "lasdi.latent_dynamics.LatentDynamics.ncoefs"]], "nt (lasdi.latent_dynamics.latentdynamics attribute)": [[7, "lasdi.latent_dynamics.LatentDynamics.nt"]], "sample() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.sample"]], "simulate() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.simulate"]], "mse (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.MSE"]], "sindy (class in lasdi.latent_dynamics.sindy)": [[8, "lasdi.latent_dynamics.sindy.SINDy"]], "calibrate() (lasdi.latent_dynamics.sindy.sindy method)": [[8, "lasdi.latent_dynamics.sindy.SINDy.calibrate"]], "coef_norm_order (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.coef_norm_order"]], "compute_time_derivative() (lasdi.latent_dynamics.sindy.sindy method)": [[8, "lasdi.latent_dynamics.sindy.SINDy.compute_time_derivative"]], "export() (lasdi.latent_dynamics.sindy.sindy method)": [[8, "lasdi.latent_dynamics.sindy.SINDy.export"]], "fd (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.fd"]], "fd_oper (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.fd_oper"]], "fd_type (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.fd_type"]], "lasdi.latent_dynamics.sindy": [[8, "module-lasdi.latent_dynamics.sindy"]], "ncoefs (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.ncoefs"]], "parser (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.parser"]], "simulate() (lasdi.latent_dynamics.sindy.sindy method)": [[8, "lasdi.latent_dynamics.sindy.SINDy.simulate"]], "autoencoder (class in lasdi.latent_space)": [[9, "lasdi.latent_space.Autoencoder"]], "multilayerperceptron (class in lasdi.latent_space)": [[9, "lasdi.latent_space.MultiLayerPerceptron"]], "act_dict (in module lasdi.latent_space)": [[9, "lasdi.latent_space.act_dict"]], "act_type (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.act_type"]], "act_type (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.act_type"]], "apply_attention() (lasdi.latent_space.multilayerperceptron method)": [[9, "lasdi.latent_space.MultiLayerPerceptron.apply_attention"]], "decoder (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.decoder"]], "encoder (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.encoder"]], "export() (lasdi.latent_space.autoencoder method)": [[9, "lasdi.latent_space.Autoencoder.export"]], "fcs (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.fcs"]], "forward() (lasdi.latent_space.autoencoder method)": [[9, "lasdi.latent_space.Autoencoder.forward"]], "forward() (lasdi.latent_space.multilayerperceptron method)": [[9, "lasdi.latent_space.MultiLayerPerceptron.forward"]], "hidden_units (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.hidden_units"]], "init_weight() (lasdi.latent_space.multilayerperceptron method)": [[9, "lasdi.latent_space.MultiLayerPerceptron.init_weight"]], "initial_condition_latent() (in module lasdi.latent_space)": [[9, "lasdi.latent_space.initial_condition_latent"]], "lasdi.latent_space": [[9, "module-lasdi.latent_space"]], "layer_sizes (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.layer_sizes"]], "layer_sizes (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.layer_sizes"]], "load() (lasdi.latent_space.autoencoder method)": [[9, "lasdi.latent_space.Autoencoder.load"]], "n_layers (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.n_layers"]], "n_z (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.n_z"]], "num_heads (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.num_heads"]], "qgrid_size (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.qgrid_size"]], "reshape_index (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.reshape_index"]], "reshape_shape (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.reshape_shape"]], "space_dim (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.space_dim"]], "threshold (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.threshold"]], "use_multihead (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.use_multihead"]], "value (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.value"]], "parameterspace (class in lasdi.param)": [[10, "lasdi.param.ParameterSpace"]], "appendtrainspace() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.appendTrainSpace"]], "createhypergridspace() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.createHyperGridSpace"]], "createhypermeshgrid() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.createHyperMeshGrid"]], "createinitialtrainspace() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.createInitialTrainSpace"]], "createtestgridspace() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.createTestGridSpace"]], "create_uniform_1dspace() (in module lasdi.param)": [[10, "lasdi.param.create_uniform_1dspace"]], "export() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.export"]], "getparam1dspace (in module lasdi.param)": [[10, "lasdi.param.getParam1DSpace"]], "getparameter() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.getParameter"]], "get_1dspace_from_list() (in module lasdi.param)": [[10, "lasdi.param.get_1dspace_from_list"]], "lasdi.param": [[10, "module-lasdi.param"]], "load() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.load"]], "n_init (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.n_init"]], "n_param (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.n_param"]], "n_test() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.n_test"]], "n_train() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.n_train"]], "param_list (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.param_list"]], "param_name (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.param_name"]], "parser (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.parser"]], "test_grid_sizes (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.test_grid_sizes"]], "test_meshgrid (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.test_meshgrid"]], "test_space (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.test_space"]], "test_space_type (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.test_space_type"]], "train_space (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.train_space"]], "burgers1d (class in lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.Burgers1D"]], "a_idx (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.a_idx"]], "convergence_threshold (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.convergence_threshold"]], "dim (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dim"]], "dt (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dt"]], "dx (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dx"]], "export() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.export"]], "grid_size (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.grid_size"]], "initial_condition() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.initial_condition"]], "jacobian() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.jacobian"]], "lasdi.physics.burgers1d": [[11, "module-lasdi.physics.burgers1d"]], "main() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.main"]], "maxk (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.maxk"]], "nt (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.nt"]], "offline (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.offline"]], "parser (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.parser"]], "qdim (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.qdim"]], "qgrid_size (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.qgrid_size"]], "residual() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.residual"]], "residual_burgers() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.residual_burgers"]], "solve() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.solve"]], "solver() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.solver"]], "t_grid (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.t_grid"]], "tmax (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.tmax"]], "w_idx (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.w_idx"]], "x_grid (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.x_grid"]], "xmax (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.xmax"]], "xmin (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.xmin"]], "offlinefom (class in lasdi.physics)": [[12, "lasdi.physics.OfflineFOM"]], "physics (class in lasdi.physics)": [[12, "lasdi.physics.Physics"]], "dim (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.dim"]], "dim (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.dim"]], "dt (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.dt"]], "dt (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.dt"]], "export() (lasdi.physics.offlinefom method)": [[12, "lasdi.physics.OfflineFOM.export"]], "export() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.export"]], "generate_solutions() (lasdi.physics.offlinefom method)": [[12, "lasdi.physics.OfflineFOM.generate_solutions"]], "generate_solutions() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.generate_solutions"]], "grid_size (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.grid_size"]], "grid_size (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.grid_size"]], "initial_condition() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.initial_condition"]], "lasdi.physics": [[12, "module-lasdi.physics"]], "nt (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.nt"]], "nt (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.nt"]], "offline (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.offline"]], "offline (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.offline"]], "param_name (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.param_name"]], "parser (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.parser"]], "qdim (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.qdim"]], "qdim (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.qdim"]], "qgrid_size (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.qgrid_size"]], "qgrid_size (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.qgrid_size"]], "residual() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.residual"]], "solve() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.solve"]], "t_grid (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.t_grid"]], "t_grid (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.t_grid"]], "x_grid (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.x_grid"]], "x_grid (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.x_grid"]], "compute_errors() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.compute_errors"]], "heatmap2d() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.heatmap2d"]], "lasdi.postprocess": [[13, "module-lasdi.postprocess"]], "plot_gp2d() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.plot_gp2d"]], "plot_prediction() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.plot_prediction"]], "timer (class in lasdi.timing)": [[14, "lasdi.timing.Timer"]], "calls (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.calls"]], "end() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.end"]], "export() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.export"]], "lasdi.timing": [[14, "module-lasdi.timing"]], "load() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.load"]], "names (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.names"]], "print() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.print"]], "start() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.start"]], "starts (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.starts"]], "times (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.times"]], "collect_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.collect_samples"]], "initialize_latent_space() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_latent_space"]], "initialize_physics() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_physics"]], "initialize_trainer() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_trainer"]], "lasdi.workflow": [[15, "module-lasdi.workflow"]], "latent_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.latent_dict"]], "ld_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.ld_dict"]], "main() (in module lasdi.workflow)": [[15, "lasdi.workflow.main"]], "parser (in module lasdi.workflow)": [[15, "lasdi.workflow.parser"]], "physics_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.physics_dict"]], "pick_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.pick_samples"]], "run_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.run_samples"]], "step() (in module lasdi.workflow)": [[15, "lasdi.workflow.step"]], "trainer_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.trainer_dict"]]}})
\ No newline at end of file
+Search.setIndex({"docnames": ["autoapi/index", "autoapi/lasdi/enums/index", "autoapi/lasdi/fd/index", "autoapi/lasdi/gp/index", "autoapi/lasdi/gplasdi/index", "autoapi/lasdi/index", "autoapi/lasdi/inputs/index", "autoapi/lasdi/latent_dynamics/index", "autoapi/lasdi/latent_dynamics/sindy/index", "autoapi/lasdi/latent_space/index", "autoapi/lasdi/param/index", "autoapi/lasdi/physics/burgers1d/index", "autoapi/lasdi/physics/index", "autoapi/lasdi/postprocess/index", "autoapi/lasdi/timing/index", "autoapi/lasdi/workflow/index", "index"], "filenames": ["autoapi/index.rst", "autoapi/lasdi/enums/index.rst", "autoapi/lasdi/fd/index.rst", "autoapi/lasdi/gp/index.rst", "autoapi/lasdi/gplasdi/index.rst", "autoapi/lasdi/index.rst", "autoapi/lasdi/inputs/index.rst", "autoapi/lasdi/latent_dynamics/index.rst", "autoapi/lasdi/latent_dynamics/sindy/index.rst", "autoapi/lasdi/latent_space/index.rst", "autoapi/lasdi/param/index.rst", "autoapi/lasdi/physics/burgers1d/index.rst", "autoapi/lasdi/physics/index.rst", "autoapi/lasdi/postprocess/index.rst", "autoapi/lasdi/timing/index.rst", "autoapi/lasdi/workflow/index.rst", "index.rst"], "titles": ["API Reference", "lasdi.enums", "lasdi.fd", "lasdi.gp", "lasdi.gplasdi", "lasdi", "lasdi.inputs", "lasdi.latent_dynamics", "lasdi.latent_dynamics.sindy", "lasdi.latent_space", "lasdi.param", "lasdi.physics.burgers1d", "lasdi.physics", "lasdi.postprocess", "lasdi.timing", "lasdi.workflow", "LaSDI documentation"], "terms": {"thi": [0, 1], "page": 0, "contain": [0, 3], "auto": 0, "gener": [0, 1, 3, 11, 12], "document": 0, "1": [0, 1, 2, 9, 11, 12, 13], "lasdi": 0, "latent_dynam": [0, 4, 5], "sindi": [0, 3, 7, 13], "physic": [0, 4, 5, 9, 10, 13, 15, 16], "burgers1d": [0, 12, 15], "enum": [0, 5], "fd": [0, 5, 8], "gp": [0, 5], "gplasdi": [0, 5, 15, 16], "input": [0, 5], "latent_spac": [0, 5], "param": [0, 3, 5, 11, 12, 13], "postprocess": [0, 5], "time": [0, 5, 7, 8], "workflow": [0, 5], "creat": 0, "sphinx": 0, "autoapi": 0, "nextstep": 1, "base": [1, 2, 8, 9, 11, 12, 16], "enumer": 1, "deriv": [1, 8], "from": [1, 3, 6, 11], "defin": 1, "new": 1, "train": [1, 3, 4, 8], "picksampl": 1, "2": [1, 2, 11, 12], "runsampl": 1, "3": [1, 2, 8, 11, 12], "collectsampl": 1, "4": [1, 2], "result": 1, "unexecut": 1, "success": 1, "fail": 1, "complet": 1, "stencil": 2, "leftbdrdepth": 2, "0": [2, 4, 9, 10, 11, 12, 13], "leftbdrwidth": 2, "leftbdrstencil": 2, "leftbdrnorm": 2, "interiorstencil": 2, "interiorindex": 2, "getoper": 2, "nx": [2, 11], "period": 2, "fals": [2, 6, 7, 8, 9, 12, 15], "convert": [2, 10], "scipy_coo": 2, "sbp12": [2, 8], "5": [2, 13], "sbp24": [2, 8], "6": [2, 13], "sbp36": [2, 8], "7": 2, "8": 2, "9": 2, "sbp48": [2, 8], "10": [2, 13], "11": 2, "12": 2, "x1": 2, "x2": 2, "x3": 2, "fddict": 2, "fit_gp": 3, "x": [3, 9, 10], "y": 3, "each": [3, 8, 10], "given": [3, 7, 8, 12], "interpol": [3, 16], "dataset": [3, 8], "n_train": [3, 7, 10], "n_param": [3, 10], "numpi": [3, 4, 7, 8, 10, 11, 12], "2d": [3, 4, 7, 8, 10, 11, 12], "arrai": [3, 4, 10, 11, 12], "n_coef": 3, "we": 3, "assum": [3, 8, 11, 12], "target": 3, "coeffici": [3, 7], "i": [3, 6, 7, 8, 10, 15, 16], "independ": 3, "other": 3, "gp_dictionnari": [3, 4, 13], "sklearn": 3, "object": 3, "eval_gp": 3, "param_grid": [3, 4, 9, 10], "comput": [3, 4, 7, 8, 11, 13, 16], "predict": [3, 16], "mean": 3, "standard": [3, 4], "deviat": [3, 4], "point": [3, 7, 8], "paramet": [3, 4, 10, 12, 13], "space": [3, 4, 9, 10, 15, 16], "grid": [3, 4, 10], "sample_coef": 3, "n_sampl": [3, 4, 13], "sampl": [3, 7], "set": [3, 7], "od": [3, 8, 16], "one": [3, 6, 7], "coef_sampl": 3, "list": [3, 4, 6, 10], "length": 3, "where": 3, "term": [3, 8], "matrix": 3, "distribut": 3, "average_rom": 4, "autoencod": [4, 9, 13, 15, 16], "gp_dictionari": 4, "sample_rom": 4, "collect": 4, "rom": [4, 16], "trajectori": 4, "gaussian": [4, 16], "process": [4, 16], "regressor": 4, "size": [4, 8, 10, 12], "n_test": [4, 10], "integ": 4, "assert": 4, "len": 4, "shape": [4, 7, 8, 11, 12], "output": [4, 6, 7, 8, 9, 10], "np": 4, "nt": [4, 7, 8, 11, 12], "n_z": [4, 9], "get_fom_max_std": 4, "zi": 4, "maximum": [4, 13], "accross": 4, "find": [4, 6], "correspond": [4, 6, 8, 10], "locat": 4, "optimizer_to": 4, "optim": 4, "devic": 4, "bayesianglasdi": 4, "param_spac": 4, "config": [4, 8, 9, 10, 15], "x_train": 4, "x_test": [4, 13], "timer": [4, 14], "lr": 4, "n_iter": 4, "max_it": 4, "max_greedy_it": 4, "ld_weight": 4, "coef_weight": 4, "mse": [4, 8], "path_checkpoint": 4, "path_result": 4, "best_loss": 4, "best_coef": 4, "none": [4, 6, 8, 9, 10, 11, 12, 15], "restart_it": 4, "get_new_sample_point": 4, "export": [4, 7, 8, 9, 10, 11, 12, 14], "load": [4, 7, 9, 10, 14], "dict_": [4, 6, 7, 9, 10, 14], "verbos": 6, "inputpars": 6, "dict": [6, 10], "name": [6, 14], "getinput": 6, "kei": 6, "fallback": 6, "datatyp": 6, "valu": [6, 9, 13], "If": 6, "specifi": [6, 8], "do": 6, "exist": 6, "us": [6, 16], "doe": 6, "return": 6, "an": 6, "error": [6, 13], "enforc": 6, "ha": 6, "right": 6, "getdictfromlist": 6, "list_": 6, "inputdict": 6, "get": 6, "val": 6, "note": 6, "onli": [6, 8, 15], "first": 6, "item": 6, "even": 6, "more": 6, "than": 6, "latentdynam": [7, 8], "dim_": 7, "nt_": 7, "dim": [7, 8, 11, 12], "ncoef": [7, 8], "coef": [7, 8], "calibr": [7, 8], "z": [7, 8], "dt": [7, 8, 11, 12], "compute_loss": [7, 8], "true": [7, 8, 12, 13], "latent": [7, 9, 15, 16], "dynam": [7, 16], "loss": 7, "seri": 7, "encod": [7, 8, 9], "3d": [7, 11, 12], "tensor": [7, 8], "time_dim": [7, 8], "space_dim": [7, 8, 9, 11, 12], "simul": [7, 8], "z0": [7, 8, 9], "t_grid": [7, 8, 11, 12], "integr": [7, 8], "initi": [7, 8, 9, 15], "condit": [7, 8, 9], "coefs_sampl": 7, "z0_sampl": 7, "fd_type": 8, "fd_oper": 8, "parser": [8, 10, 11, 12, 15], "string": 8, "finit": 8, "differ": 8, "scheme": 8, "summat": 8, "part": 8, "1st": 8, "2nd": 8, "boundari": 8, "interior": 8, "order": [8, 16], "oper": 8, "4th": 8, "3rd": 8, "6th": 8, "8th": 8, "coef_norm_ord": 8, "loop": 8, "over": 8, "all": 8, "case": 8, "dimens": [8, 10, 11, 12], "compute_time_deriv": 8, "build": 8, "linear": 8, "The": [8, 10], "ar": 8, "through": [8, 16], "timestep": 8, "uniform": 8, "scalar": 8, "dzdt": 8, "same": 8, "system": [8, 16], "u0": [8, 9, 11], "act_dict": 9, "initial_condition_lat": 9, "multilayerperceptron": 9, "layer_s": 9, "act_typ": 9, "sigmoid": 9, "reshape_index": 9, "reshape_shap": 9, "threshold": 9, "num_head": 9, "torch": 9, "nn": 9, "n_layer": 9, "fc": 9, "use_multihead": 9, "forward": 9, "apply_attent": 9, "act_idx": 9, "init_weight": 9, "qgrid_siz": [9, 11, 12], "hidden_unit": 9, "decod": [9, 16], "get_1dspace_from_list": 10, "create_uniform_1dspac": 10, "getparam1dspac": 10, "parameterspac": 10, "param_list": 10, "param_nam": [10, 11, 12, 15], "train_spac": 10, "test_spac": 10, "n_init": [10, 13], "test_grid_s": 10, "test_meshgrid": 10, "test_space_typ": 10, "createinitialtrainspac": 10, "createtestgridspac": 10, "getparamet": 10, "param_vector": 10, "vector": 10, "take": 10, "solv": [10, 11, 12, 16], "initial_condit": [10, 11, 12], "createhypermeshgrid": 10, "param_rang": 10, "1d": [10, 11, 12], "equal": 10, "number": 10, "paramspac": 10, "tupl": 10, "nd": [10, 11, 12], "createhypergridspac": 10, "mesh_grid": 10, "appendtrainspac": 10, "cfg": [11, 12], "a_idx": 11, "w_idx": 11, "qdim": [11, 12], "offlin": [11, 12], "grid_siz": [11, 12], "higher": [11, 12], "xmin": 11, "xmax": 11, "dx": 11, "tmax": 11, "x_grid": [11, 12], "maxk": 11, "convergence_threshold": 11, "residu": [11, 12], "xhist": [11, 12], "residual_burg": 11, "un": 11, "uw": 11, "c": 11, "idxn1": 11, "burger": 11, "equat": 11, "data": 11, "http": 11, "github": 11, "com": 11, "llnl": 11, "glasdi": [11, 16], "jacobian": 11, "u": 11, "solver": 11, "main": [11, 15], "generate_solut": 12, "solut": [12, 16], "must": 12, "match": 12, "requir": 12, "specif": 12, "offlinefom": 12, "compute_error": 13, "x_pred": 13, "rel": 13, "plot_predict": 13, "scale": 13, "plot_gp2d": 13, "p1_mesh": 13, "p2_mesh": 13, "gp_mean": 13, "gp_std": 13, "param_train": 13, "param_label": 13, "p1": 13, "p2": 13, "plot_shap": 13, "figsiz": 13, "15": 13, "13": 13, "refin": 13, "cm": 13, "plt": 13, "jet": 13, "margin": 13, "05": 13, "heatmap2d": 13, "p1_grid": 13, "p2_grid": 13, "titl": 13, "call": 14, "start": 14, "end": 14, "print": 14, "trainer_dict": 15, "latent_dict": 15, "ld_dict": 15, "physics_dict": 15, "step": 15, "trainer": 15, "next_step": 15, "use_restart": 15, "initialize_train": 15, "restart_fil": 15, "class": 15, "model": 15, "accord": [15, 16], "file": 15, "current": 15, "avail": 15, "initialize_latent_spac": 15, "ae": 15, "initialize_phys": 15, "fom": 15, "pick_sampl": 15, "run_sampl": 15, "collect_sampl": 15, "light": 16, "weight": 16, "python": 16, "packag": 16, "identif": 16, "map": 16, "full": 16, "pde": 16, "learn": 16, "govern": 16, "By": 16, "reduc": 16, "fast": 16, "accur": 16, "can": 16, "made": 16, "feed": 16, "It": 16, "also": 16, "support": 16, "parametr": 16, "uncertainti": 16, "evalu": 16, "via": 16, "api": 16, "fri": 16, "william": 16, "d": 16, "xiaolong": 16, "he": 16, "youngsoo": 16, "choi": 16, "method": 16, "appli": 16, "mechan": 16, "engin": 16, "399": 16, "2022": 16, "115436": 16, "jonathan": 16, "l": 16, "belof": 16, "jiun": 16, "shyan": 16, "chen": 16, "inform": 16, "greedi": 16, "journal": 16, "489": 16, "2023": 16, "112267": 16, "tran": 16, "april": 16, "daniel": 16, "A": 16, "messeng": 16, "david": 16, "m": 16, "bortz": 16, "weak": 16, "form": 16, "427": 16, "2024": 16, "116998": 16, "park": 16, "jun": 16, "sur": 16, "richard": 16, "siu": 16, "wun": 16, "cheung": 16, "yeonjong": 16, "shin": 16, "tlasdi": 16, "thermodynam": 16, "arxiv": 16, "preprint": 16, "2403": 16, "05848": 16, "bonnevil": 16, "christoph": 16, "debojyoti": 16, "ghosh": 16, "interpret": 16, "deep": 16, "418": 16, "116535": 16, "activ": 16, "simultan": 16, "2407": 16, "00337": 16}, "objects": {"": [[5, 0, 0, "-", "lasdi"]], "lasdi": [[1, 0, 0, "-", "enums"], [2, 0, 0, "-", "fd"], [3, 0, 0, "-", "gp"], [4, 0, 0, "-", "gplasdi"], [6, 0, 0, "-", "inputs"], [7, 0, 0, "-", "latent_dynamics"], [9, 0, 0, "-", "latent_space"], [10, 0, 0, "-", "param"], [12, 0, 0, "-", "physics"], [13, 0, 0, "-", "postprocess"], [14, 0, 0, "-", "timing"], [15, 0, 0, "-", "workflow"]], "lasdi.enums": [[1, 1, 1, "", "NextStep"], [1, 1, 1, "", "Result"]], "lasdi.enums.NextStep": [[1, 2, 1, "", "CollectSample"], [1, 2, 1, "", "PickSample"], [1, 2, 1, "", "RunSample"], [1, 2, 1, "", "Train"]], "lasdi.enums.Result": [[1, 2, 1, "", "Complete"], [1, 2, 1, "", "Fail"], [1, 2, 1, "", "Success"], [1, 2, 1, "", "Unexecuted"]], "lasdi.fd": [[2, 3, 1, "", "FDdict"], [2, 1, 1, "", "SBP12"], [2, 1, 1, "", "SBP24"], [2, 1, 1, "", "SBP36"], [2, 1, 1, "", "SBP48"], [2, 1, 1, "", "Stencil"]], "lasdi.fd.SBP12": [[2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"]], "lasdi.fd.SBP24": [[2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"]], "lasdi.fd.SBP36": [[2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"]], "lasdi.fd.SBP48": [[2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"], [2, 2, 1, "", "x1"], [2, 2, 1, "", "x2"], [2, 2, 1, "", "x3"]], "lasdi.fd.Stencil": [[2, 4, 1, "", "convert"], [2, 4, 1, "", "getOperators"], [2, 2, 1, "", "interiorIndexes"], [2, 2, 1, "", "interiorStencils"], [2, 2, 1, "", "leftBdrDepth"], [2, 2, 1, "", "leftBdrNorm"], [2, 2, 1, "", "leftBdrStencils"], [2, 2, 1, "", "leftBdrWidth"]], "lasdi.gp": [[3, 5, 1, "", "eval_gp"], [3, 5, 1, "", "fit_gps"], [3, 5, 1, "", "sample_coefs"]], "lasdi.gplasdi": [[4, 1, 1, "", "BayesianGLaSDI"], [4, 5, 1, "", "average_rom"], [4, 5, 1, "", "get_fom_max_std"], [4, 5, 1, "", "optimizer_to"], [4, 5, 1, "", "sample_roms"]], "lasdi.gplasdi.BayesianGLaSDI": [[4, 2, 1, "", "MSE"], [4, 2, 1, "", "X_test"], [4, 2, 1, "", "X_train"], [4, 2, 1, "", "autoencoder"], [4, 2, 1, "", "best_coefs"], [4, 2, 1, "", "best_loss"], [4, 2, 1, "", "coef_weight"], [4, 2, 1, "", "device"], [4, 4, 1, "", "export"], [4, 4, 1, "", "get_new_sample_point"], [4, 2, 1, "", "latent_dynamics"], [4, 2, 1, "", "ld_weight"], [4, 4, 1, "", "load"], [4, 2, 1, "", "lr"], [4, 2, 1, "", "max_greedy_iter"], [4, 2, 1, "", "max_iter"], [4, 2, 1, "", "n_iter"], [4, 2, 1, "", "n_samples"], [4, 2, 1, "", "optimizer"], [4, 2, 1, "", "param_space"], [4, 2, 1, "", "path_checkpoint"], [4, 2, 1, "", "path_results"], [4, 2, 1, "", "physics"], [4, 2, 1, "", "restart_iter"], [4, 2, 1, "", "timer"], [4, 4, 1, "", "train"]], "lasdi.inputs": [[6, 1, 1, "", "InputParser"], [6, 5, 1, "", "getDictFromList"], [6, 3, 1, "", "verbose"]], "lasdi.inputs.InputParser": [[6, 2, 1, "", "dict_"], [6, 4, 1, "", "getInput"], [6, 2, 1, "", "name"]], "lasdi.latent_dynamics": [[7, 1, 1, "", "LatentDynamics"], [8, 0, 0, "-", "sindy"]], "lasdi.latent_dynamics.LatentDynamics": [[7, 4, 1, "", "calibrate"], [7, 2, 1, "", "coefs"], [7, 2, 1, "", "dim"], [7, 4, 1, "", "export"], [7, 4, 1, "", "load"], [7, 2, 1, "", "ncoefs"], [7, 2, 1, "", "nt"], [7, 4, 1, "", "sample"], [7, 4, 1, "", "simulate"]], "lasdi.latent_dynamics.sindy": [[8, 1, 1, "", "SINDy"]], "lasdi.latent_dynamics.sindy.SINDy": [[8, 2, 1, "", "MSE"], [8, 4, 1, "", "calibrate"], [8, 2, 1, "", "coef_norm_order"], [8, 4, 1, "", "compute_time_derivative"], [8, 4, 1, "", "export"], [8, 2, 1, "", "fd"], [8, 2, 1, "", "fd_oper"], [8, 2, 1, "", "fd_type"], [8, 2, 1, "", "ncoefs"], [8, 2, 1, "", "parser"], [8, 4, 1, "", "simulate"]], "lasdi.latent_space": [[9, 1, 1, "", "Autoencoder"], [9, 1, 1, "", "MultiLayerPerceptron"], [9, 3, 1, "", "act_dict"], [9, 5, 1, "", "initial_condition_latent"]], "lasdi.latent_space.Autoencoder": [[9, 2, 1, "", "act_type"], [9, 2, 1, "", "decoder"], [9, 2, 1, "", "encoder"], [9, 4, 1, "", "export"], [9, 4, 1, "", "forward"], [9, 2, 1, "", "hidden_units"], [9, 2, 1, "", "layer_sizes"], [9, 4, 1, "", "load"], [9, 2, 1, "", "n_z"], [9, 2, 1, "", "num_heads"], [9, 2, 1, "", "qgrid_size"], [9, 2, 1, "", "space_dim"], [9, 2, 1, "", "threshold"], [9, 2, 1, "", "value"]], "lasdi.latent_space.MultiLayerPerceptron": [[9, 2, 1, "", "act_type"], [9, 4, 1, "", "apply_attention"], [9, 2, 1, "", "fcs"], [9, 4, 1, "", "forward"], [9, 4, 1, "", "init_weight"], [9, 2, 1, "", "layer_sizes"], [9, 2, 1, "", "n_layers"], [9, 2, 1, "", "reshape_index"], [9, 2, 1, "", "reshape_shape"], [9, 2, 1, "", "use_multihead"]], "lasdi.param": [[10, 1, 1, "", "ParameterSpace"], [10, 5, 1, "", "create_uniform_1dspace"], [10, 3, 1, "", "getParam1DSpace"], [10, 5, 1, "", "get_1dspace_from_list"]], "lasdi.param.ParameterSpace": [[10, 4, 1, "", "appendTrainSpace"], [10, 4, 1, "", "createHyperGridSpace"], [10, 4, 1, "", "createHyperMeshGrid"], [10, 4, 1, "", "createInitialTrainSpace"], [10, 4, 1, "", "createTestGridSpace"], [10, 4, 1, "", "export"], [10, 4, 1, "", "getParameter"], [10, 4, 1, "", "load"], [10, 2, 1, "", "n_init"], [10, 2, 1, "", "n_param"], [10, 4, 1, "", "n_test"], [10, 4, 1, "", "n_train"], [10, 2, 1, "", "param_list"], [10, 2, 1, "", "param_name"], [10, 2, 1, "", "parser"], [10, 2, 1, "", "test_grid_sizes"], [10, 2, 1, "", "test_meshgrid"], [10, 2, 1, "", "test_space"], [10, 2, 1, "", "test_space_type"], [10, 2, 1, "", "train_space"]], "lasdi.physics": [[12, 1, 1, "", "OfflineFOM"], [12, 1, 1, "", "Physics"], [11, 0, 0, "-", "burgers1d"]], "lasdi.physics.OfflineFOM": [[12, 2, 1, "", "dim"], [12, 2, 1, "", "dt"], [12, 4, 1, "", "export"], [12, 4, 1, "", "generate_solutions"], [12, 2, 1, "", "grid_size"], [12, 2, 1, "", "nt"], [12, 2, 1, "", "offline"], [12, 2, 1, "", "parser"], [12, 2, 1, "", "qdim"], [12, 2, 1, "", "qgrid_size"], [12, 2, 1, "", "t_grid"], [12, 2, 1, "", "x_grid"]], "lasdi.physics.Physics": [[12, 2, 1, "", "dim"], [12, 2, 1, "", "dt"], [12, 4, 1, "", "export"], [12, 4, 1, "", "generate_solutions"], [12, 2, 1, "", "grid_size"], [12, 4, 1, "", "initial_condition"], [12, 2, 1, "", "nt"], [12, 2, 1, "", "offline"], [12, 2, 1, "", "param_name"], [12, 2, 1, "", "qdim"], [12, 2, 1, "", "qgrid_size"], [12, 4, 1, "", "residual"], [12, 4, 1, "", "solve"], [12, 2, 1, "", "t_grid"], [12, 2, 1, "", "x_grid"]], "lasdi.physics.burgers1d": [[11, 1, 1, "", "Burgers1D"], [11, 5, 1, "", "jacobian"], [11, 5, 1, "", "main"], [11, 5, 1, "", "residual_burgers"], [11, 5, 1, "", "solver"]], "lasdi.physics.burgers1d.Burgers1D": [[11, 2, 1, "", "a_idx"], [11, 2, 1, "", "convergence_threshold"], [11, 2, 1, "", "dim"], [11, 2, 1, "", "dt"], [11, 2, 1, "", "dx"], [11, 4, 1, "", "export"], [11, 2, 1, "", "grid_size"], [11, 4, 1, "", "initial_condition"], [11, 2, 1, "", "maxk"], [11, 2, 1, "", "nt"], [11, 2, 1, "", "offline"], [11, 2, 1, "", "parser"], [11, 2, 1, "", "qdim"], [11, 2, 1, "", "qgrid_size"], [11, 4, 1, "", "residual"], [11, 4, 1, "", "solve"], [11, 2, 1, "", "t_grid"], [11, 2, 1, "", "tmax"], [11, 2, 1, "", "w_idx"], [11, 2, 1, "", "x_grid"], [11, 2, 1, "", "xmax"], [11, 2, 1, "", "xmin"]], "lasdi.postprocess": [[13, 5, 1, "", "compute_errors"], [13, 5, 1, "", "heatmap2d"], [13, 5, 1, "", "plot_gp2d"], [13, 5, 1, "", "plot_prediction"]], "lasdi.timing": [[14, 1, 1, "", "Timer"]], "lasdi.timing.Timer": [[14, 2, 1, "", "calls"], [14, 4, 1, "", "end"], [14, 4, 1, "", "export"], [14, 4, 1, "", "load"], [14, 2, 1, "", "names"], [14, 4, 1, "", "print"], [14, 4, 1, "", "start"], [14, 2, 1, "", "starts"], [14, 2, 1, "", "times"]], "lasdi.workflow": [[15, 5, 1, "", "collect_samples"], [15, 5, 1, "", "initialize_latent_space"], [15, 5, 1, "", "initialize_physics"], [15, 5, 1, "", "initialize_trainer"], [15, 3, 1, "", "latent_dict"], [15, 3, 1, "", "ld_dict"], [15, 5, 1, "", "main"], [15, 3, 1, "", "parser"], [15, 3, 1, "", "physics_dict"], [15, 5, 1, "", "pick_samples"], [15, 5, 1, "", "run_samples"], [15, 5, 1, "", "step"], [15, 3, 1, "", "trainer_dict"]]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:attribute", "3": "py:data", "4": "py:method", "5": "py:function"}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "attribute", "Python attribute"], "3": ["py", "data", "Python data"], "4": ["py", "method", "Python method"], "5": ["py", "function", "Python function"]}, "titleterms": {"api": 0, "refer": [0, 16], "lasdi": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16], "enum": 1, "class": [1, 2, 4, 6, 7, 8, 9, 10, 11, 12, 14], "modul": [1, 2, 3, 4, 6, 8, 9, 10, 11, 13, 14, 15], "content": [1, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16], "fd": 2, "attribut": [2, 6, 9, 10, 15], "gp": 3, "function": [3, 4, 6, 9, 10, 11, 13, 15], "gplasdi": 4, "subpackag": 5, "submodul": [5, 7, 12], "input": 6, "latent_dynam": [7, 8], "packag": [7, 12], "sindi": 8, "latent_spac": 9, "param": 10, "physic": [11, 12], "burgers1d": 11, "postprocess": 13, "time": 14, "workflow": 15, "document": 16}, "envversion": {"sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx": 58}, "alltitles": {"API Reference": [[0, "api-reference"]], "lasdi.enums": [[1, "module-lasdi.enums"]], "Classes": [[1, "classes"], [2, "classes"], [4, "classes"], [6, "classes"], [7, "classes"], [8, "classes"], [9, "classes"], [10, "classes"], [11, "classes"], [12, "classes"], [14, "classes"]], "Module Contents": [[1, "module-contents"], [2, "module-contents"], [3, "module-contents"], [4, "module-contents"], [6, "module-contents"], [8, "module-contents"], [9, "module-contents"], [10, "module-contents"], [11, "module-contents"], [13, "module-contents"], [14, "module-contents"], [15, "module-contents"]], "lasdi.fd": [[2, "module-lasdi.fd"]], "Attributes": [[2, "attributes"], [6, "attributes"], [9, "attributes"], [10, "attributes"], [15, "attributes"]], "lasdi.gp": [[3, "module-lasdi.gp"]], "Functions": [[3, "functions"], [4, "functions"], [6, "functions"], [9, "functions"], [10, "functions"], [11, "functions"], [13, "functions"], [15, "functions"]], "lasdi.gplasdi": [[4, "module-lasdi.gplasdi"]], "lasdi": [[5, "module-lasdi"]], "Subpackages": [[5, "subpackages"]], "Submodules": [[5, "submodules"], [7, "submodules"], [12, "submodules"]], "lasdi.inputs": [[6, "module-lasdi.inputs"]], "lasdi.latent_dynamics": [[7, "module-lasdi.latent_dynamics"]], "Package Contents": [[7, "package-contents"], [12, "package-contents"]], "lasdi.latent_dynamics.sindy": [[8, "module-lasdi.latent_dynamics.sindy"]], "lasdi.latent_space": [[9, "module-lasdi.latent_space"]], "lasdi.param": [[10, "module-lasdi.param"]], "lasdi.physics.burgers1d": [[11, "module-lasdi.physics.burgers1d"]], "lasdi.physics": [[12, "module-lasdi.physics"]], "lasdi.postprocess": [[13, "module-lasdi.postprocess"]], "lasdi.timing": [[14, "module-lasdi.timing"]], "lasdi.workflow": [[15, "module-lasdi.workflow"]], "LaSDI documentation": [[16, "lasdi-documentation"]], "Contents:": [[16, null]], "References": [[16, "references"]]}, "indexentries": {"collectsample (lasdi.enums.nextstep attribute)": [[1, "lasdi.enums.NextStep.CollectSample"]], "complete (lasdi.enums.result attribute)": [[1, "lasdi.enums.Result.Complete"]], "fail (lasdi.enums.result attribute)": [[1, "lasdi.enums.Result.Fail"]], "nextstep (class in lasdi.enums)": [[1, "lasdi.enums.NextStep"]], "picksample (lasdi.enums.nextstep attribute)": [[1, "lasdi.enums.NextStep.PickSample"]], "result (class in lasdi.enums)": [[1, "lasdi.enums.Result"]], "runsample (lasdi.enums.nextstep attribute)": [[1, "lasdi.enums.NextStep.RunSample"]], "success (lasdi.enums.result attribute)": [[1, "lasdi.enums.Result.Success"]], "train (lasdi.enums.nextstep attribute)": [[1, "lasdi.enums.NextStep.Train"]], "unexecuted (lasdi.enums.result attribute)": [[1, "lasdi.enums.Result.Unexecuted"]], "lasdi.enums": [[1, "module-lasdi.enums"]], "module": [[1, "module-lasdi.enums"], [2, "module-lasdi.fd"], [3, "module-lasdi.gp"], [4, "module-lasdi.gplasdi"], [5, "module-lasdi"], [6, "module-lasdi.inputs"], [7, "module-lasdi.latent_dynamics"], [8, "module-lasdi.latent_dynamics.sindy"], [9, "module-lasdi.latent_space"], [10, "module-lasdi.param"], [11, "module-lasdi.physics.burgers1d"], [12, "module-lasdi.physics"], [13, "module-lasdi.postprocess"], [14, "module-lasdi.timing"], [15, "module-lasdi.workflow"]], "fddict (in module lasdi.fd)": [[2, "lasdi.fd.FDdict"]], "sbp12 (class in lasdi.fd)": [[2, "lasdi.fd.SBP12"]], "sbp24 (class in lasdi.fd)": [[2, "lasdi.fd.SBP24"]], "sbp36 (class in lasdi.fd)": [[2, "lasdi.fd.SBP36"]], "sbp48 (class in lasdi.fd)": [[2, "lasdi.fd.SBP48"]], "stencil (class in lasdi.fd)": [[2, "lasdi.fd.Stencil"]], "convert() (lasdi.fd.stencil method)": [[2, "lasdi.fd.Stencil.convert"]], "getoperators() (lasdi.fd.stencil method)": [[2, "lasdi.fd.Stencil.getOperators"]], "interiorindexes (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.interiorIndexes"]], "interiorindexes (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.interiorIndexes"]], "interiorindexes (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.interiorIndexes"]], "interiorindexes (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.interiorIndexes"]], "interiorindexes (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.interiorIndexes"]], "interiorstencils (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.interiorStencils"]], "interiorstencils (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.interiorStencils"]], "interiorstencils (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.interiorStencils"]], "interiorstencils (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.interiorStencils"]], "interiorstencils (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.interiorStencils"]], "lasdi.fd": [[2, "module-lasdi.fd"]], "leftbdrdepth (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.leftBdrDepth"]], "leftbdrdepth (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.leftBdrDepth"]], "leftbdrdepth (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.leftBdrDepth"]], "leftbdrdepth (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.leftBdrDepth"]], "leftbdrdepth (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.leftBdrDepth"]], "leftbdrnorm (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.leftBdrNorm"]], "leftbdrnorm (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.leftBdrNorm"]], "leftbdrnorm (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.leftBdrNorm"]], "leftbdrnorm (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.leftBdrNorm"]], "leftbdrnorm (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.leftBdrNorm"]], "leftbdrstencils (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.leftBdrStencils"]], "leftbdrstencils (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.leftBdrStencils"]], "leftbdrstencils (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.leftBdrStencils"]], "leftbdrstencils (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.leftBdrStencils"]], "leftbdrstencils (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.leftBdrStencils"]], "leftbdrwidth (lasdi.fd.sbp12 attribute)": [[2, "lasdi.fd.SBP12.leftBdrWidth"]], "leftbdrwidth (lasdi.fd.sbp24 attribute)": [[2, "lasdi.fd.SBP24.leftBdrWidth"]], "leftbdrwidth (lasdi.fd.sbp36 attribute)": [[2, "lasdi.fd.SBP36.leftBdrWidth"]], "leftbdrwidth (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.leftBdrWidth"]], "leftbdrwidth (lasdi.fd.stencil attribute)": [[2, "lasdi.fd.Stencil.leftBdrWidth"]], "x1 (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.x1"]], "x2 (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.x2"]], "x3 (lasdi.fd.sbp48 attribute)": [[2, "lasdi.fd.SBP48.x3"]], "eval_gp() (in module lasdi.gp)": [[3, "lasdi.gp.eval_gp"]], "fit_gps() (in module lasdi.gp)": [[3, "lasdi.gp.fit_gps"]], "lasdi.gp": [[3, "module-lasdi.gp"]], "sample_coefs() (in module lasdi.gp)": [[3, "lasdi.gp.sample_coefs"]], "bayesianglasdi (class in lasdi.gplasdi)": [[4, "lasdi.gplasdi.BayesianGLaSDI"]], "mse (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.MSE"]], "x_test (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.X_test"]], "x_train (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.X_train"]], "autoencoder (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.autoencoder"]], "average_rom() (in module lasdi.gplasdi)": [[4, "lasdi.gplasdi.average_rom"]], "best_coefs (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.best_coefs"]], "best_loss (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.best_loss"]], "coef_weight (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.coef_weight"]], "device (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.device"]], "export() (lasdi.gplasdi.bayesianglasdi method)": [[4, "lasdi.gplasdi.BayesianGLaSDI.export"]], "get_fom_max_std() (in module lasdi.gplasdi)": [[4, "lasdi.gplasdi.get_fom_max_std"]], "get_new_sample_point() (lasdi.gplasdi.bayesianglasdi method)": [[4, "lasdi.gplasdi.BayesianGLaSDI.get_new_sample_point"]], "lasdi.gplasdi": [[4, "module-lasdi.gplasdi"]], "latent_dynamics (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.latent_dynamics"]], "ld_weight (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.ld_weight"]], "load() (lasdi.gplasdi.bayesianglasdi method)": [[4, "lasdi.gplasdi.BayesianGLaSDI.load"]], "lr (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.lr"]], "max_greedy_iter (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.max_greedy_iter"]], "max_iter (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.max_iter"]], "n_iter (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.n_iter"]], "n_samples (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.n_samples"]], "optimizer (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.optimizer"]], "optimizer_to() (in module lasdi.gplasdi)": [[4, "lasdi.gplasdi.optimizer_to"]], "param_space (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.param_space"]], "path_checkpoint (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.path_checkpoint"]], "path_results (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.path_results"]], "physics (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.physics"]], "restart_iter (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.restart_iter"]], "sample_roms() (in module lasdi.gplasdi)": [[4, "lasdi.gplasdi.sample_roms"]], "timer (lasdi.gplasdi.bayesianglasdi attribute)": [[4, "lasdi.gplasdi.BayesianGLaSDI.timer"]], "train() (lasdi.gplasdi.bayesianglasdi method)": [[4, "lasdi.gplasdi.BayesianGLaSDI.train"]], "lasdi": [[5, "module-lasdi"]], "inputparser (class in lasdi.inputs)": [[6, "lasdi.inputs.InputParser"]], "dict_ (lasdi.inputs.inputparser attribute)": [[6, "lasdi.inputs.InputParser.dict_"]], "getdictfromlist() (in module lasdi.inputs)": [[6, "lasdi.inputs.getDictFromList"]], "getinput() (lasdi.inputs.inputparser method)": [[6, "lasdi.inputs.InputParser.getInput"]], "lasdi.inputs": [[6, "module-lasdi.inputs"]], "name (lasdi.inputs.inputparser attribute)": [[6, "lasdi.inputs.InputParser.name"]], "verbose (in module lasdi.inputs)": [[6, "lasdi.inputs.verbose"]], "latentdynamics (class in lasdi.latent_dynamics)": [[7, "lasdi.latent_dynamics.LatentDynamics"]], "calibrate() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.calibrate"]], "coefs (lasdi.latent_dynamics.latentdynamics attribute)": [[7, "lasdi.latent_dynamics.LatentDynamics.coefs"]], "dim (lasdi.latent_dynamics.latentdynamics attribute)": [[7, "lasdi.latent_dynamics.LatentDynamics.dim"]], "export() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.export"]], "lasdi.latent_dynamics": [[7, "module-lasdi.latent_dynamics"]], "load() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.load"]], "ncoefs (lasdi.latent_dynamics.latentdynamics attribute)": [[7, "lasdi.latent_dynamics.LatentDynamics.ncoefs"]], "nt (lasdi.latent_dynamics.latentdynamics attribute)": [[7, "lasdi.latent_dynamics.LatentDynamics.nt"]], "sample() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.sample"]], "simulate() (lasdi.latent_dynamics.latentdynamics method)": [[7, "lasdi.latent_dynamics.LatentDynamics.simulate"]], "mse (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.MSE"]], "sindy (class in lasdi.latent_dynamics.sindy)": [[8, "lasdi.latent_dynamics.sindy.SINDy"]], "calibrate() (lasdi.latent_dynamics.sindy.sindy method)": [[8, "lasdi.latent_dynamics.sindy.SINDy.calibrate"]], "coef_norm_order (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.coef_norm_order"]], "compute_time_derivative() (lasdi.latent_dynamics.sindy.sindy method)": [[8, "lasdi.latent_dynamics.sindy.SINDy.compute_time_derivative"]], "export() (lasdi.latent_dynamics.sindy.sindy method)": [[8, "lasdi.latent_dynamics.sindy.SINDy.export"]], "fd (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.fd"]], "fd_oper (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.fd_oper"]], "fd_type (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.fd_type"]], "lasdi.latent_dynamics.sindy": [[8, "module-lasdi.latent_dynamics.sindy"]], "ncoefs (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.ncoefs"]], "parser (lasdi.latent_dynamics.sindy.sindy attribute)": [[8, "lasdi.latent_dynamics.sindy.SINDy.parser"]], "simulate() (lasdi.latent_dynamics.sindy.sindy method)": [[8, "lasdi.latent_dynamics.sindy.SINDy.simulate"]], "autoencoder (class in lasdi.latent_space)": [[9, "lasdi.latent_space.Autoencoder"]], "multilayerperceptron (class in lasdi.latent_space)": [[9, "lasdi.latent_space.MultiLayerPerceptron"]], "act_dict (in module lasdi.latent_space)": [[9, "lasdi.latent_space.act_dict"]], "act_type (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.act_type"]], "act_type (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.act_type"]], "apply_attention() (lasdi.latent_space.multilayerperceptron method)": [[9, "lasdi.latent_space.MultiLayerPerceptron.apply_attention"]], "decoder (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.decoder"]], "encoder (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.encoder"]], "export() (lasdi.latent_space.autoencoder method)": [[9, "lasdi.latent_space.Autoencoder.export"]], "fcs (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.fcs"]], "forward() (lasdi.latent_space.autoencoder method)": [[9, "lasdi.latent_space.Autoencoder.forward"]], "forward() (lasdi.latent_space.multilayerperceptron method)": [[9, "lasdi.latent_space.MultiLayerPerceptron.forward"]], "hidden_units (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.hidden_units"]], "init_weight() (lasdi.latent_space.multilayerperceptron method)": [[9, "lasdi.latent_space.MultiLayerPerceptron.init_weight"]], "initial_condition_latent() (in module lasdi.latent_space)": [[9, "lasdi.latent_space.initial_condition_latent"]], "lasdi.latent_space": [[9, "module-lasdi.latent_space"]], "layer_sizes (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.layer_sizes"]], "layer_sizes (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.layer_sizes"]], "load() (lasdi.latent_space.autoencoder method)": [[9, "lasdi.latent_space.Autoencoder.load"]], "n_layers (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.n_layers"]], "n_z (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.n_z"]], "num_heads (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.num_heads"]], "qgrid_size (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.qgrid_size"]], "reshape_index (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.reshape_index"]], "reshape_shape (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.reshape_shape"]], "space_dim (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.space_dim"]], "threshold (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.threshold"]], "use_multihead (lasdi.latent_space.multilayerperceptron attribute)": [[9, "lasdi.latent_space.MultiLayerPerceptron.use_multihead"]], "value (lasdi.latent_space.autoencoder attribute)": [[9, "lasdi.latent_space.Autoencoder.value"]], "parameterspace (class in lasdi.param)": [[10, "lasdi.param.ParameterSpace"]], "appendtrainspace() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.appendTrainSpace"]], "createhypergridspace() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.createHyperGridSpace"]], "createhypermeshgrid() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.createHyperMeshGrid"]], "createinitialtrainspace() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.createInitialTrainSpace"]], "createtestgridspace() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.createTestGridSpace"]], "create_uniform_1dspace() (in module lasdi.param)": [[10, "lasdi.param.create_uniform_1dspace"]], "export() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.export"]], "getparam1dspace (in module lasdi.param)": [[10, "lasdi.param.getParam1DSpace"]], "getparameter() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.getParameter"]], "get_1dspace_from_list() (in module lasdi.param)": [[10, "lasdi.param.get_1dspace_from_list"]], "lasdi.param": [[10, "module-lasdi.param"]], "load() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.load"]], "n_init (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.n_init"]], "n_param (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.n_param"]], "n_test() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.n_test"]], "n_train() (lasdi.param.parameterspace method)": [[10, "lasdi.param.ParameterSpace.n_train"]], "param_list (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.param_list"]], "param_name (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.param_name"]], "parser (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.parser"]], "test_grid_sizes (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.test_grid_sizes"]], "test_meshgrid (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.test_meshgrid"]], "test_space (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.test_space"]], "test_space_type (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.test_space_type"]], "train_space (lasdi.param.parameterspace attribute)": [[10, "lasdi.param.ParameterSpace.train_space"]], "burgers1d (class in lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.Burgers1D"]], "a_idx (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.a_idx"]], "convergence_threshold (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.convergence_threshold"]], "dim (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dim"]], "dt (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dt"]], "dx (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.dx"]], "export() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.export"]], "grid_size (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.grid_size"]], "initial_condition() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.initial_condition"]], "jacobian() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.jacobian"]], "lasdi.physics.burgers1d": [[11, "module-lasdi.physics.burgers1d"]], "main() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.main"]], "maxk (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.maxk"]], "nt (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.nt"]], "offline (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.offline"]], "parser (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.parser"]], "qdim (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.qdim"]], "qgrid_size (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.qgrid_size"]], "residual() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.residual"]], "residual_burgers() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.residual_burgers"]], "solve() (lasdi.physics.burgers1d.burgers1d method)": [[11, "lasdi.physics.burgers1d.Burgers1D.solve"]], "solver() (in module lasdi.physics.burgers1d)": [[11, "lasdi.physics.burgers1d.solver"]], "t_grid (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.t_grid"]], "tmax (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.tmax"]], "w_idx (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.w_idx"]], "x_grid (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.x_grid"]], "xmax (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.xmax"]], "xmin (lasdi.physics.burgers1d.burgers1d attribute)": [[11, "lasdi.physics.burgers1d.Burgers1D.xmin"]], "offlinefom (class in lasdi.physics)": [[12, "lasdi.physics.OfflineFOM"]], "physics (class in lasdi.physics)": [[12, "lasdi.physics.Physics"]], "dim (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.dim"]], "dim (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.dim"]], "dt (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.dt"]], "dt (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.dt"]], "export() (lasdi.physics.offlinefom method)": [[12, "lasdi.physics.OfflineFOM.export"]], "export() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.export"]], "generate_solutions() (lasdi.physics.offlinefom method)": [[12, "lasdi.physics.OfflineFOM.generate_solutions"]], "generate_solutions() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.generate_solutions"]], "grid_size (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.grid_size"]], "grid_size (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.grid_size"]], "initial_condition() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.initial_condition"]], "lasdi.physics": [[12, "module-lasdi.physics"]], "nt (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.nt"]], "nt (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.nt"]], "offline (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.offline"]], "offline (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.offline"]], "param_name (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.param_name"]], "parser (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.parser"]], "qdim (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.qdim"]], "qdim (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.qdim"]], "qgrid_size (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.qgrid_size"]], "qgrid_size (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.qgrid_size"]], "residual() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.residual"]], "solve() (lasdi.physics.physics method)": [[12, "lasdi.physics.Physics.solve"]], "t_grid (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.t_grid"]], "t_grid (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.t_grid"]], "x_grid (lasdi.physics.offlinefom attribute)": [[12, "lasdi.physics.OfflineFOM.x_grid"]], "x_grid (lasdi.physics.physics attribute)": [[12, "lasdi.physics.Physics.x_grid"]], "compute_errors() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.compute_errors"]], "heatmap2d() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.heatmap2d"]], "lasdi.postprocess": [[13, "module-lasdi.postprocess"]], "plot_gp2d() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.plot_gp2d"]], "plot_prediction() (in module lasdi.postprocess)": [[13, "lasdi.postprocess.plot_prediction"]], "timer (class in lasdi.timing)": [[14, "lasdi.timing.Timer"]], "calls (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.calls"]], "end() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.end"]], "export() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.export"]], "lasdi.timing": [[14, "module-lasdi.timing"]], "load() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.load"]], "names (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.names"]], "print() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.print"]], "start() (lasdi.timing.timer method)": [[14, "lasdi.timing.Timer.start"]], "starts (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.starts"]], "times (lasdi.timing.timer attribute)": [[14, "lasdi.timing.Timer.times"]], "collect_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.collect_samples"]], "initialize_latent_space() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_latent_space"]], "initialize_physics() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_physics"]], "initialize_trainer() (in module lasdi.workflow)": [[15, "lasdi.workflow.initialize_trainer"]], "lasdi.workflow": [[15, "module-lasdi.workflow"]], "latent_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.latent_dict"]], "ld_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.ld_dict"]], "main() (in module lasdi.workflow)": [[15, "lasdi.workflow.main"]], "parser (in module lasdi.workflow)": [[15, "lasdi.workflow.parser"]], "physics_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.physics_dict"]], "pick_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.pick_samples"]], "run_samples() (in module lasdi.workflow)": [[15, "lasdi.workflow.run_samples"]], "step() (in module lasdi.workflow)": [[15, "lasdi.workflow.step"]], "trainer_dict (in module lasdi.workflow)": [[15, "lasdi.workflow.trainer_dict"]]}})
\ No newline at end of file