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deprecated_uberenv.py
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deprecated_uberenv.py
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#!/bin/sh
"exec" "python3" "-u" "-B" "$0" "$@"
###############################################################################
# Copyright (c) 2014-2024, Lawrence Livermore National Security, LLC.
#
# Produced at the Lawrence Livermore National Laboratory
#
# LLNL-CODE-666778
#
# All rights reserved.
#
# This file is part of Conduit.
#
# For details, see https://lc.llnl.gov/conduit/.
#
# Please also read conduit/LICENSE
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the above copyright notice,
# this list of conditions and the disclaimer below.
#
# * Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the disclaimer (as noted below) in the
# documentation and/or other materials provided with the distribution.
#
# * Neither the name of the LLNS/LLNL nor the names of its contributors may
# be used to endorse or promote products derived from this software without
# specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
# ARE DISCLAIMED. IN NO EVENT SHALL LAWRENCE LIVERMORE NATIONAL SECURITY,
# LLC, THE U.S. DEPARTMENT OF ENERGY OR CONTRIBUTORS BE LIABLE FOR ANY
# DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
# OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
# HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
# STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
# IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#
###############################################################################
"""
file: deprecated_uberenv.py
description: automates using a package manager to install a project.
Uses spack on Unix-based systems and Vcpkg on Windows-based systems.
note: This file is deprecated. It uses spack activate and spack deactivate,
which are no longer supported, having been deprecated in Spack v0.18 and
completely removed in v0.19. This file is meant allow use of the original
Uberenv to allow time to switch to the new Uberenv featuring Spack
Environments.
"""
import os
import sys
import subprocess
import shutil
import socket
import platform
import json
import datetime
import glob
import re
from optparse import OptionParser
from distutils.version import LooseVersion
from functools import partial
from os import environ as env
from os.path import join as pjoin
from os.path import abspath as pabs
# Since we use subprocesses, flushing prints allows us to keep logs in
# order.
print = partial(print, flush=True)
def sexe(cmd,ret_output=False,echo=False):
""" Helper for executing shell commands. """
if echo:
print("[exe: {0}]".format(cmd))
if ret_output:
p = subprocess.Popen(cmd,
shell=True,
stdout=subprocess.PIPE,
stderr=subprocess.STDOUT)
out = p.communicate()[0]
out = out.decode('utf8')
return p.returncode,out
else:
return subprocess.call(cmd,shell=True)
def parse_args():
"Parses args from command line"
parser = OptionParser()
parser.add_option("--install",
action="store_true",
dest="install",
default=False,
help="Install `package_name`, not just its dependencies.")
# where to install
parser.add_option("--prefix",
dest="prefix",
default=None,
help="destination directory")
# Spack spec without preceding package name
parser.add_option("--spec",
dest="spec",
default=None,
help="Spack spec without preceding package name")
# for vcpkg, what architecture to target
parser.add_option("--triplet",
dest="vcpkg_triplet",
default=None,
help="vcpkg architecture triplet")
# optional location of spack mirror
parser.add_option("--mirror",
dest="mirror",
default=None,
help="spack mirror directory")
# flag to create mirror
parser.add_option("--create-mirror",
action="store_true",
dest="create_mirror",
default=False,
help="Create spack mirror")
# optional location of spack upstream
parser.add_option("--upstream",
dest="upstream",
default=None,
help="add an external spack instance as upstream")
# optional spack --reuse concretizer behaviour
parser.add_option("--reuse",
dest="reuse",
default=False,
help="Use spack v0.17+ --reuse functionality for spec, install and dev-build.")
# this option allows a user to explicitly to select a
# group of spack settings files (compilers.yaml , packages.yaml)
parser.add_option("--spack-config-dir",
dest="spack_config_dir",
default=None,
help="dir with spack settings files (compilers.yaml, packages.yaml, etc)")
# this option allows a user to set the directory for their vcpkg ports on Windows
parser.add_option("--vcpkg-ports-path",
dest="vcpkg_ports_path",
default=None,
help="dir with vckpkg ports")
# overrides package_name
parser.add_option("--package-name",
dest="package_name",
default=None,
help="override the default package name")
# uberenv spack tpl build mode
parser.add_option("--spack-build-mode",
dest="spack_build_mode",
default=None,
help="set mode used to build third party dependencies with spack"
"(options: 'dev-build' 'uberenv-pkg' 'install' "
"[default: 'dev-build'] )\n")
# spack debug mode
parser.add_option("--spack-debug",
dest="spack_debug",
action="store_true",
default=False,
help="add debug option to spack spec/install commands")
# spack allow deprecated packages
parser.add_option("--spack-allow-deprecated",
dest="spack_allow_deprecated",
action="store_true",
default=False,
help="add --deprecated to spack install commands")
# controls after which package phase spack should stop
parser.add_option("--package-final-phase",
dest="package_final_phase",
default=None,
help="override the default phase after which spack should stop")
# controls source_dir spack should use to build the package
parser.add_option("--package-source-dir",
dest="package_source_dir",
default=None,
help="override the default source dir spack should use")
# a file that holds settings for a specific project
# using uberenv.py
parser.add_option("--project-json",
dest="project_json",
default=pjoin(uberenv_script_dir(),"project.json"),
help="uberenv project settings json file")
# option to explicitly set the number of build jobs
parser.add_option("-j",
dest="build_jobs",
default=None,
help="Explicitly set build jobs")
# flag to use insecure curl + git
parser.add_option("-k",
action="store_true",
dest="ignore_ssl_errors",
default=False,
help="Ignore SSL Errors")
# option to force a pull of the package manager
parser.add_option("--pull",
action="store_true",
dest="repo_pull",
default=False,
help="Pull from package manager, if repo already exists")
# option to force for clean of packages specified to
# be cleaned in the project.json
parser.add_option("--clean",
action="store_true",
dest="spack_clean",
default=False,
help="Force uninstall of packages specified in project.json")
# option to tell spack to run tests
parser.add_option("--run_tests",
action="store_true",
dest="run_tests",
default=False,
help="Invoke build tests during spack install")
# option to init osx sdk env flags
parser.add_option("--macos-sdk-env-setup",
action="store_true",
dest="macos_sdk_env_setup",
default=False,
help="Set several env vars to select OSX SDK settings."
"This was necessary for older versions of macOS "
" but can cause issues with macOS versions >= 10.13. "
" so it is disabled by default.")
# option to stop after spack download and setup
parser.add_option("--setup-only",
action="store_true",
dest="setup_only",
default=False,
help="Only download and setup Spack. No further Spack command will be run.")
# option to skip spack download and setup
parser.add_option("--skip-setup",
action="store_true",
dest="skip_setup",
default=False,
help="Only install (using pre-setup Spack).")
###############
# parse args
###############
opts, extras = parser.parse_args()
# we want a dict b/c the values could
# be passed without using optparse
opts = vars(opts)
if opts["spack_config_dir"] is not None:
opts["spack_config_dir"] = pabs(opts["spack_config_dir"])
if not os.path.isdir(opts["spack_config_dir"]):
print("[ERROR: invalid spack config dir: {0} ]".format(opts["spack_config_dir"]))
sys.exit(-1)
# if rel path is given for the mirror, we need to evaluate here -- before any
# chdirs to avoid confusion related to what it is relative to.
# (it should be relative to where uberenv is run from, so it matches what you expect
# from shell completion, etc)
if not is_windows() and opts["mirror"] is not None:
if not opts["mirror"].startswith("http") and not os.path.isabs(opts["mirror"]):
opts["mirror"] = pabs(opts["mirror"])
return opts, extras
def pretty_print_dictionary(dictionary):
for key, value in dictionary.items():
print(" {0}: {1}".format(key, value))
def uberenv_script_dir():
# returns the directory of the uberenv.py script
return os.path.dirname(os.path.abspath(__file__))
def load_json_file(json_file):
# reads json file
return json.load(open(json_file))
def is_darwin():
return "darwin" in platform.system().lower()
def is_windows():
return "windows" in platform.system().lower()
def find_project_config(opts):
project_json_file = opts["project_json"]
# Default case: "project.json" seats next to uberenv.py or is given on command line.
if os.path.isfile(project_json_file):
return project_json_file
# Submodule case: Look for ".uberenv_config.json" in current then search parent dirs
else:
lookup_path = pabs(uberenv_script_dir())
end_of_search = False
while not end_of_search:
if os.path.dirname(lookup_path) == lookup_path:
end_of_search = True
project_json_file = pjoin(lookup_path,".uberenv_config.json")
if os.path.isfile(project_json_file):
return project_json_file
else:
lookup_path = pabs(os.path.join(lookup_path, os.pardir))
print("ERROR: No configuration json file found")
sys.exit(-1)
class UberEnv():
""" Base class for package manager """
def __init__(self, opts, extra_opts):
self.opts = opts
self.extra_opts = extra_opts
# load project settings
self.project_opts = load_json_file(opts["project_json"])
# setup main package name
self.pkg_name = self.set_from_args_or_json("package_name")
# Set project.json defaults
if not "force_commandline_prefix" in self.project_opts:
self.project_opts["force_commandline_prefix"] = False
print("[uberenv project settings: ")
pretty_print_dictionary(self.project_opts)
print("]")
print("[uberenv command line options: ")
pretty_print_dictionary(self.opts)
print("]")
###########################
# basic spack helpers
###########################
def spack_exe_path(self):
return pjoin(self.dest_dir, "spack/bin/spack")
def spack_version(self):
res, out = sexe('{0} --version'.format(self.spack_exe_path()), ret_output=True)
return LooseVersion(out[:-1])
def setup_paths_and_dirs(self):
self.uberenv_path = uberenv_script_dir()
# setup destination paths
if not self.opts["prefix"]:
if self.project_opts["force_commandline_prefix"]:
# project has specified prefix must be on command line
print("[ERROR: --prefix flag for library destination is required]")
sys.exit(1)
# otherwise set default
self.opts["prefix"] = "uberenv_libs"
self.dest_dir = pabs(self.opts["prefix"])
# print a warning if the dest path already exists
if not os.path.isdir(self.dest_dir):
os.mkdir(self.dest_dir)
else:
print("[info: destination '{0}' already exists]".format(self.dest_dir))
def set_from_args_or_json(self,setting, optional=True):
"""
When optional=False:
If the setting key is not in the json file, error and raise an exception.
When optional=True:
If the setting key is not in the json file or opts, return None.
"""
setting_value = None
try:
setting_value = self.project_opts[setting]
except (KeyError):
if not optional:
print("ERROR: '{0}' must at least be defined in project.json".format(setting))
raise
if self.opts[setting]:
setting_value = self.opts[setting]
return setting_value
def set_from_json(self,setting, optional=True):
"""
When optional=False:
If the setting key is not in the json file, error and raise an exception.
When optional=True:
If the setting key is not in the json file or opts, return None.
"""
setting_value = None
try:
setting_value = self.project_opts[setting]
except (KeyError):
if not optional:
print("ERROR: '{0}' must at least be defined in project.json".format(setting))
raise
return setting_value
def detect_platform(self):
# find supported sets of compilers.yaml, packages,yaml
res = None
if is_darwin():
res = "darwin"
elif "SYS_TYPE" in os.environ.keys():
sys_type = os.environ["SYS_TYPE"].lower()
res = sys_type
return res
class VcpkgEnv(UberEnv):
""" Helper to clone vcpkg and install libraries on Windows """
def __init__(self, opts, extra_opts):
UberEnv.__init__(self,opts,extra_opts)
# setup architecture triplet
self.vcpkg_triplet = self.set_from_args_or_json("vcpkg_triplet")
print("Vcpkg triplet: {}".format(self.vcpkg_triplet))
if self.vcpkg_triplet is None:
self.vcpkg_triplet = os.getenv("VCPKG_DEFAULT_TRIPLET", "x86-windows")
def setup_paths_and_dirs(self):
# get the current working path, and the glob used to identify the
# package files we want to hot-copy to vcpkg
UberEnv.setup_paths_and_dirs(self)
# Find path to vcpkg ports
_errmsg = ""
if self.opts["vcpkg_ports_path"]:
# Command line option case
self.vcpkg_ports_path = pabs(self.opts["vcpkg_ports_path"])
_errmsg = "Given path for command line option `vcpkg-ports-path` does not exist"
elif "vcpkg_ports_path" in self.project_opts:
# .uberenv_config.json case
new_path = self.project_opts["vcpkg_ports_path"]
if new_path is not None:
self.vcpkg_ports_path = pabs(new_path)
_errmsg = "Given path in config file option 'vcpkg_ports_path' does not exist"
else:
# next to uberenv.py script (backwards compatibility)
self.vcpkg_ports_path = pabs(pjoin(self.uberenv_path, "vcpkg_ports"))
_errmsg = "Could not find any directory for vcpkg ports. " \
"Use either command line option 'vcpkg-ports-path', " \
"config file option 'vcpkg_ports_path', or " \
"defaulted directory 'vcpkg_ports' next to 'uberenv.py'"
if not os.path.isdir(self.vcpkg_ports_path):
print("[ERROR: {0}: {1}]".format(_errmsg, self.vcpkg_ports_path))
sys.exit(1)
# setup path for vcpkg repo
print("[installing to: {0}]".format(self.dest_dir))
self.dest_vcpkg = pjoin(self.dest_dir,"vcpkg")
if os.path.isdir(self.dest_vcpkg):
print("[info: destination '{0}' already exists]".format(self.dest_vcpkg))
def clone_repo(self):
if not os.path.isdir(self.dest_vcpkg):
# compose clone command for the dest path, vcpkg url and branch
vcpkg_branch = self.project_opts.get("vcpkg_branch", "master")
vcpkg_url = self.project_opts.get("vcpkg_url", "https://github.com/microsoft/vcpkg")
print("[info: cloning vcpkg '{0}' branch from {1} into {2}]"
.format(vcpkg_branch,vcpkg_url, self.dest_vcpkg))
os.chdir(self.dest_dir)
clone_opts = ("-c http.sslVerify=false "
if self.opts["ignore_ssl_errors"] else "")
clone_cmd = "git {0} clone --single-branch -b {1} {2} vcpkg".format(clone_opts, vcpkg_branch,vcpkg_url)
sexe(clone_cmd, echo=True)
# optionally, check out a specific commit
if "vcpkg_commit" in self.project_opts:
sha1 = self.project_opts["vcpkg_commit"]
print("[info: using vcpkg commit {0}]".format(sha1))
os.chdir(self.dest_vcpkg)
sexe("git checkout {0}".format(sha1),echo=True)
if self.opts["repo_pull"]:
# do a pull to make sure we have the latest
os.chdir(self.dest_vcpkg)
sexe("git stash", echo=True)
res = sexe("git pull", echo=True)
if res != 0:
#Usually untracked files that would be overwritten
print("[ERROR: Git failed to pull]")
sys.exit(-1)
# Bootstrap vcpkg
os.chdir(self.dest_vcpkg)
print("[info: bootstrapping vcpkg]")
sexe("bootstrap-vcpkg.bat -disableMetrics")
def patch(self):
""" hot-copy our ports into vcpkg """
import distutils.dir_util
dest_vcpkg_ports = pjoin(self.dest_vcpkg, "ports")
print("[info: copying from {0} to {1}]".format(self.vcpkg_ports_path, dest_vcpkg_ports))
distutils.dir_util.copy_tree(self.vcpkg_ports_path, dest_vcpkg_ports)
def clean_build(self):
pass
def show_info(self):
os.chdir(self.dest_vcpkg)
print("[info: Details for package '{0}']".format(self.pkg_name))
sexe("vcpkg.exe search " + self.pkg_name, echo=True)
print("[info: Dependencies for package '{0}']".format(self.pkg_name))
sexe("vcpkg.exe depend-info " + self.pkg_name, echo=True)
def create_mirror(self):
pass
def use_mirror(self):
pass
def install(self):
os.chdir(self.dest_vcpkg)
install_cmd = "vcpkg.exe "
install_cmd += "install {0}:{1}".format(self.pkg_name, self.vcpkg_triplet)
res = sexe(install_cmd, echo=True)
# Running the install_cmd eventually generates the host config file,
# which we copy to the target directory.
src_hc = pjoin(self.dest_vcpkg, "installed", self.vcpkg_triplet, "include", self.pkg_name, "hc.cmake")
hcfg_fname = pjoin(self.dest_dir, "{0}.{1}.cmake".format(platform.uname()[1], self.vcpkg_triplet))
print("[info: copying host config file to {0}]".format(hcfg_fname))
shutil.copy(os.path.abspath(src_hc), hcfg_fname)
print("")
print("[install complete!]")
return res
class SpackEnv(UberEnv):
""" Helper to clone spack and install libraries on MacOS an Linux """
def __init__(self, opts, extra_opts):
UberEnv.__init__(self,opts,extra_opts)
self.pkg_version = self.set_from_json("package_version")
self.pkg_src_dir = self.set_from_args_or_json("package_source_dir", True)
self.pkg_final_phase = self.set_from_args_or_json("package_final_phase",True)
# get build mode
self.build_mode = self.set_from_args_or_json("spack_build_mode",True)
# default spack build mode is dev-build
if self.build_mode is None:
self.build_mode = "dev-build"
# NOTE: install always overrides the build mode to "install"
if self.opts["install"]:
self.build_mode = "install"
# if we are using fake package mode, adjust the pkg name
if self.build_mode == "uberenv-pkg":
self.pkg_name = "uberenv-" + self.pkg_name
print("[uberenv spack build mode: {0}]".format(self.build_mode))
self.packages_paths = []
self.spec_hash = ""
self.use_install = False
if "spack_concretizer" in self.project_opts and self.project_opts["spack_concretizer"] == "clingo":
self.use_clingo = True
if "spack_setup_clingo" in self.project_opts and self.project_opts["spack_setup_clingo"] == False:
print("[info: clingo will not be installed by uberenv]")
else:
self.setup_clingo()
else:
self.use_clingo = False
# Some additional setup for macos
if is_darwin():
if opts["macos_sdk_env_setup"]:
# setup osx deployment target and sdk settings
setup_osx_sdk_env_vars()
else:
print("[skipping MACOSX env var setup]")
# setup default spec
if opts["spec"] is None:
if is_darwin():
# Note: newer spack, for macOS we need to use `apple-clang`
opts["spec"] = "%apple-clang"
else:
opts["spec"] = "%gcc"
self.opts["spec"] = "@{0}{1}".format(self.pkg_version,opts["spec"])
elif not opts["spec"].startswith("@"):
self.opts["spec"] = "@{0}{1}".format(self.pkg_version,opts["spec"])
else:
self.opts["spec"] = "{0}".format(opts["spec"])
print("[spack spec: {0}]".format(self.opts["spec"]))
# List of concretizer options not in all versions of spack
# (to be checked if it exists after cloning spack)
self.fresh_exists = False
self.reuse_exists = False
def check_concretizer_opts(self):
cmd = "{0} help install".format(self.spack_exe_path())
print("[Checking for concretizer options...]")
res, out = sexe( cmd, ret_output = True)
if "--fresh" in out:
self.fresh_exists = True
print("[--fresh exists.]")
if "--reuse" in out:
self.reuse_exists = True
print("[--reuse exists.]")
def add_concretizer_opts(self, options):
# reuse is now default in spack, if on and exists use that
# otherwise use fresh if it exists
if self.opts["reuse"] and self.reuse_exists:
options += "--reuse "
elif self.fresh_exists:
options += "--fresh "
return options
def print_spack_python_info(self):
cmd = "{0} python -c \"import sys; print(sys.executable);\"".format(self.spack_exe_path())
res, out = sexe( cmd, ret_output = True)
print("[spack python: {0}]".format(out.strip()))
def append_path_to_packages_paths(self, path, errorOnNonexistant=True):
path = pabs(path)
if not os.path.exists(path):
if errorOnNonexistant:
print("[ERROR: Given path in 'spack_packages_path' does not exist: {0}]".format(path))
sys.exit(1)
else:
return
self.packages_paths.append(path)
def setup_paths_and_dirs(self):
# get the current working path, and the glob used to identify the
# package files we want to hot-copy to spack
UberEnv.setup_paths_and_dirs(self)
# Find Spack yaml configs path (compilers.yaml, packages.yaml, etc.)
# Next to uberenv.py (backwards compatility)
spack_configs_path = pabs(pjoin(self.uberenv_path,"spack_configs"))
# In project config file
if "spack_configs_path" in self.project_opts.keys():
new_path = self.project_opts["spack_configs_path"]
if new_path is not None:
spack_configs_path = pabs(new_path)
if not os.path.isdir(spack_configs_path):
print("[ERROR: Given path in 'spack_configs_path' does not exist: {0}]".format(spack_configs_path))
sys.exit(1)
# Test if the override option was used (--spack-config-dir)
self.spack_config_dir = self.opts["spack_config_dir"]
if self.spack_config_dir is None:
# If command line option is not used, search for platform under
# given directory
uberenv_plat = self.detect_platform()
if uberenv_plat is not None:
self.spack_config_dir = pabs(pjoin(spack_configs_path,uberenv_plat))
# Find project level packages to override spack's internal packages
if "spack_packages_path" in self.project_opts.keys():
# packages directories listed in project.json
_paths = self.project_opts["spack_packages_path"]
if not isinstance(_paths, list):
# user gave a single string
self.append_path_to_packages_paths(_paths)
else:
# user gave a list of strings
for _path in _paths:
self.append_path_to_packages_paths(_path)
else:
# default to packages living next to uberenv script if it exists
self.append_path_to_packages_paths(pjoin(self.uberenv_path,"packages"), errorOnNonexistant=False)
print("[installing to: {0}]".format(self.dest_dir))
self.dest_spack = pjoin(self.dest_dir,"spack")
if os.path.isdir(self.dest_spack):
print("[info: destination '{0}' already exists]".format(self.dest_spack))
if self.build_mode == "dev-build":
self.pkg_src_dir = os.path.abspath(os.path.join(self.uberenv_path,self.pkg_src_dir))
if not os.path.isdir(self.pkg_src_dir):
print("[ERROR: package_source_dir '{0}' does not exist]".format(self.pkg_src_dir))
sys.exit(-1)
def find_spack_pkg_path_from_hash(self, pkg_name, pkg_hash):
res, out = sexe("{0} find -p /{1}".format(self.spack_exe_path(), pkg_hash), ret_output = True)
for l in out.split("\n"):
# TODO: at least print a warning when several choices exist. This will
# pick the first in the list.
if l.startswith(pkg_name):
return {"name": pkg_name, "path": l.split()[-1]}
print("[ERROR: failed to find package from hash named '{0}' with hash '{1}']".format(pkg_name, pkg_hash))
sys.exit(-1)
def find_spack_pkg_path(self, pkg_name, spec = ""):
res, out = sexe("{0} find -p '{1}{2}'".format(self.spack_exe_path(),pkg_name,spec), ret_output = True)
for l in out.split("\n"):
# TODO: at least print a warning when several choices exist. This will
# pick the first in the list.
if l.startswith(pkg_name):
return {"name": pkg_name, "path": l.split()[-1]}
print("[ERROR: failed to find package from spec named '{0}' with spec '{1}']".format(pkg_name, spec))
sys.exit(-1)
# Extract the first line of the full spec
def read_spack_full_spec(self,pkg_name,spec):
debug = ""
if self.opts["spack_debug"]:
debug = "--debug --stacktrace "
res, out = sexe("{0} {1} spec '{2}{3}'".format(self.spack_exe_path(),debug,pkg_name,spec), ret_output=True)
for l in out.split("\n"):
if l.startswith(pkg_name) and l.count("@") > 0 and l.count("arch=") > 0:
return l.strip()
def clone_repo(self):
if not os.path.isdir(self.dest_spack):
# compose clone command for the dest path, spack url and branch
print("[info: cloning spack develop branch from github]")
os.chdir(self.dest_dir)
clone_opts = ("-c http.sslVerify=false "
if self.opts["ignore_ssl_errors"] else "")
spack_url = self.project_opts.get("spack_url", "https://github.com/spack/spack.git")
spack_branch = self.project_opts.get("spack_branch", "develop")
clone_cmd = "git {0} clone --single-branch --depth=1 -b {1} {2} spack".format(clone_opts, spack_branch, spack_url)
sexe(clone_cmd, echo=True)
if "spack_commit" in self.project_opts:
# optionally, check out a specific commit
os.chdir(pjoin(self.dest_dir,"spack"))
sha1 = self.project_opts["spack_commit"]
res, current_sha1 = sexe("git log -1 --pretty=%H", ret_output=True)
if sha1 != current_sha1:
print("[info: using spack commit {0}]".format(sha1))
sexe("git stash", echo=True)
sexe("git fetch --depth=1 origin {0}".format(sha1),echo=True)
res = sexe("git checkout {0}".format(sha1),echo=True)
if res != 0:
# Usually untracked files that would be overwritten
print("[ERROR: Git failed to checkout]")
sys.exit(-1)
if self.opts["repo_pull"]:
# do a pull to make sure we have the latest
os.chdir(pjoin(self.dest_dir,"spack"))
sexe("git stash", echo=True)
res = sexe("git pull", echo=True)
if res != 0:
#Usually untracked files that would be overwritten
print("[ERROR: Git failed to pull]")
sys.exit(-1)
def disable_spack_config_scopes(self,spack_dir):
# disables all config scopes except "defaults", which we will
# force our settings into
spack_lib_config = pjoin(spack_dir,"lib","spack","spack","config.py")
print("[disabling config scope (except defaults) in: {0}]".format(spack_lib_config))
cfg_script = open(spack_lib_config).read()
#
# For newer versions of spack, we can use the SPACK_DISABLE_LOCAL_CONFIG
# env var plumbing. We patch it to True to make a permanent change.
#
# Note: This path does not disable the 'site' config, but disabling 'user' config
# is our primary goal.
#
spack_disable_env_stmt = 'disable_local_config = "SPACK_DISABLE_LOCAL_CONFIG" in os.environ'
spack_disable_env_stmt_perm = "disable_local_config = True"
if cfg_script.count(spack_disable_env_stmt) > 0:
cfg_script = cfg_script.replace(spack_disable_env_stmt,
spack_disable_env_stmt_perm)
# path for older versions of spack
elif cfg_script.count(spack_disable_env_stmt_perm) == 0:
for cfg_scope_stmt in ["('system', os.path.join(spack.paths.system_etc_path, 'spack')),",
"('site', os.path.join(spack.paths.etc_path, 'spack')),",
"('user', spack.paths.user_config_path)"]:
cfg_script = cfg_script.replace(cfg_scope_stmt,
"#DISABLED BY UBERENV: " + cfg_scope_stmt)
open(spack_lib_config,"w").write(cfg_script)
def patch(self):
cfg_dir = self.spack_config_dir
spack_dir = self.dest_spack
# this is an opportunity to show spack python info post obtaining spack
self.print_spack_python_info()
# Check which concretizer this version of Spack has
self.check_concretizer_opts()
# force spack to use only "defaults" config scope
self.disable_spack_config_scopes(spack_dir)
spack_etc_defaults_dir = pjoin(spack_dir,"etc","spack","defaults")
if cfg_dir is not None:
# copy in "defaults" config.yaml
config_yaml = pabs(pjoin(cfg_dir,"..","config.yaml"))
if os.path.isfile(config_yaml):
sexe("cp {0} {1}/".format(config_yaml, spack_etc_defaults_dir), echo=True)
mirrors_yaml = pabs(pjoin(cfg_dir,"..","mirrors.yaml"))
if os.path.isfile(mirrors_yaml):
sexe("cp {0} {1}/".format(mirrors_yaml, spack_etc_defaults_dir), echo=True)
# copy in other settings per platform
print("[copying uberenv compiler and packages settings from {0}]".format(cfg_dir))
config_yaml = pjoin(cfg_dir,"config.yaml")
mirrors_yaml = pjoin(cfg_dir,"mirrors.yaml")
compilers_yaml = pjoin(cfg_dir,"compilers.yaml")
packages_yaml = pjoin(cfg_dir,"packages.yaml")
if os.path.isfile(config_yaml):
sexe("cp {0} {1}/".format(config_yaml , spack_etc_defaults_dir ), echo=True)
if os.path.isfile(mirrors_yaml):
sexe("cp {0} {1}/".format(mirrors_yaml , spack_etc_defaults_dir ), echo=True)
if os.path.isfile(compilers_yaml):
sexe("cp {0} {1}/".format(compilers_yaml, spack_etc_defaults_dir ), echo=True)
if os.path.isfile(packages_yaml):
sexe("cp {0} {1}/".format(packages_yaml, spack_etc_defaults_dir ), echo=True)
else:
# let spack try to auto find compilers
sexe("{0} compiler find".format(self.spack_exe_path()), echo=True)
# hot-copy our packages into spack
if len(self.packages_paths) > 0:
dest_spack_pkgs = pjoin(spack_dir,"var","spack","repos","builtin","packages")
for _base_path in self.packages_paths:
_src_glob = pjoin(_base_path, "*")
print("[copying patched packages from {0}]".format(_src_glob))
sexe("cp -Rf {0} {1}".format(_src_glob, dest_spack_pkgs))
# Update spack's config.yaml if clingo was requested
if self.use_clingo:
concretizer_cmd = "{0} config --scope defaults add config:concretizer:clingo".format(self.spack_exe_path())
res = sexe(concretizer_cmd, echo=True)
if res != 0:
print("[ERROR: Failed to update spack configuration to use new concretizer]")
sys.exit(-1)
def clean_build(self):
# clean out any spack cached stuff (except build stages, downloads, &
# spack's bootstrapping software)
cln_cmd = "{0} clean --misc-cache --failures --python-cache".format(self.spack_exe_path())
res = sexe(cln_cmd, echo=True)
# check if we need to force uninstall of selected packages
if self.opts["spack_clean"]:
if "spack_clean_packages" in self.project_opts:
for cln_pkg in self.project_opts["spack_clean_packages"]:
if self.find_spack_pkg_path(cln_pkg) is not None:
unist_cmd = "{0} uninstall -f -y --all --dependents ".format(self.spack_exe_path()) + cln_pkg
res = sexe(unist_cmd, echo=True)
def show_info(self):
# print version of spack
print("[spack version: {0}]".format(self.spack_version()))
# print concretized spec with install info
# default case prints install status and 32 characters hash
debug = ""
if self.opts["spack_debug"]:
debug = "--debug --stacktrace "
options = ""
options = self.add_concretizer_opts(options)
options += "--install-status --very-long"
spec_cmd = "{0} {1}spec {2} '{3}{4}'".format(self.spack_exe_path(),debug,options,self.pkg_name,self.opts["spec"])
res, out = sexe(spec_cmd, ret_output=True, echo=True)
print(out)
#Check if spec is already installed
for line in out.split("\n"):
# Example of matching line: ("status" "hash" "package"...)
# [+] hf3cubkgl74ryc3qwen73kl4yfh2ijgd serac@develop%[email protected]~debug~devtools~glvis arch=darwin-mojave-x86_64
if re.match(r"^(\[\+\]| - ) [a-z0-9]{32} " + re.escape(self.pkg_name), line):
self.spec_hash = line.split(" ")[1].lstrip()
# if spec already installed
if line.startswith("[+]"):
pkg_path = self.find_spack_pkg_path_from_hash(self.pkg_name,self.spec_hash)
install_path = pkg_path["path"]
# testing that the path exists is mandatory until Spack team fixes
# https://github.com/spack/spack/issues/16329
if os.path.isdir(install_path):
print("[Warning: {0} {1} has already been installed in {2}]".format(self.pkg_name, self.opts["spec"],install_path))
print("[Warning: Uberenv will proceed using this directory]".format(self.pkg_name))
self.use_install = True
return res
def install(self):
# use the uberenv package to trigger the right builds
# and build an host-config.cmake file
debug = ""
if self.opts["spack_debug"]:
debug = "--debug --stacktrace "
if not self.use_install:
install_cmd = "{0} {1}".format(self.spack_exe_path(), debug)
if self.opts["ignore_ssl_errors"]:
install_cmd += "-k "
# build mode -- install path
if self.build_mode == "install":
install_cmd += "install "
install_cmd = self.add_concretizer_opts(install_cmd)
if self.opts["spack_allow_deprecated"]:
install_cmd += "--deprecated "
if self.opts["run_tests"]:
install_cmd += "--test=root "
if self.pkg_final_phase:
install_cmd += "-u {0} ".format(self.pkg_final_phase)
# build mode - dev build path
elif self.build_mode == "dev-build":
# dev build path
install_cmd += "dev-build "
install_cmd = self.add_concretizer_opts(install_cmd)
if self.opts["spack_allow_deprecated"]:
install_cmd += "--deprecated "
install_cmd += "--quiet -d {0} ".format(self.pkg_src_dir)
if self.pkg_final_phase:
install_cmd += "-u {0} ".format(self.pkg_final_phase)
# build mode -- original fake package path
elif self.build_mode == "uberenv-pkg":
install_cmd += "install "
if self.opts["spack_allow_deprecated"]:
install_cmd += "--deprecated "
install_cmd = self.add_concretizer_opts(install_cmd)
if self.pkg_final_phase:
install_cmd += "-u {0} ".format(self.pkg_final_phase)
else:
print("[ERROR: unsupported build mode: {0}]".format(self.build_mode))
return -1
if self.opts["build_jobs"]:
install_cmd += "-j {0} ".format(self.opts["build_jobs"])
# for all cases we use the pkg name and spec
install_cmd += "'{0}{1}'".format(self.pkg_name,self.opts["spec"])
res = sexe(install_cmd, echo=True)
if res != 0:
print("[ERROR: failure of spack install/dev-build]")
return res
full_spec = self.read_spack_full_spec(self.pkg_name,self.opts["spec"])
if "spack_activate" in self.project_opts:
print("[activating dependent packages]")
pkg_names = self.project_opts["spack_activate"].keys()
for pkg_name in pkg_names:
pkg_spec_requirements = self.project_opts["spack_activate"][pkg_name]
activate=True
for req in pkg_spec_requirements:
if req not in full_spec:
activate=False
break
if activate:
# Note: -f disables protection against same-named files