prep_markers.R

library(here)

markers.mathys.custom = list(
  'neurons' = c('SYT1', 'SNAP25', 'GRIN1'),
  'excitatory_neuron' = c('CAMK2A', 'NRGN','SLC17A7', 'SLC17A6', 'SLC17A8'),
  'inhibitory_neuron' = c('GAD1', 'GAD2', 'SLC32A1'),
  'oligodendrocyte' = c('MBP', 'MOBP', 'PLP1'),
  'oligodendrocyte_precursor' = c('PDGFRA', 'VCAN', 'CSPG4'),
  'microglia' = c('CD74', 'CSF1R', 'C3'),
  'astrocytes' = c('GFAP', 'TNC', 'AQP4', 'SLC1A2'),
  'endothelial' = c('CLDN5', 'FLT1', 'VTN', 'PECAM1')
)

## define LIBD markers

save(markers.mathys.custom, file = here("rdas","revision","markers.rda"))