Problem with IntervalList nightly cleanup.

[lfrank]

When running the weekly cleanup script:

# ignore datajoint+jupyter async warnings
import warnings

os.environ["SPYGLASS_BASE_DIR"]="/stelmo/nwb"
bd = os.environ["SPYGLASS_BASE_DIR"]
os.environ["SPYGLASS_RECORDING_DIR"] = bd + "/recording"
os.environ["SPYGLASS_SORTING_DIR"]= bd + "/sorting"
os.environ["SPYGLASS_VIDEO_DIR"]= bd + "/video"
os.environ["SPYGLASS_WAVEFORMS_DIR"]= bd + "/waveforms"
os.environ["SPYGLASS_TEMP_DIR"]= bd + "/tmp/spyglass"
os.environ['DJ_SUPPORT_FILEPATH_MANAGEMENT']="True"

import spyglass as sg

# import tables so that we can call them easily
from spyglass.common import AnalysisNwbfile, IntervalList


def main():
    print('Starting AnalysisNwbfile nightly_cleanup function')
    AnalysisNwbfile().nightly_cleanup()
    print('Starting IntervalList nightly_cleanup function')
    IntervalList().nightly_cleanup()


if __name__ == '__main__':
    main()

The output is:

`Please enter DataJoint username: [04:00:28][ERROR] Spyglass: Uncaught exception
Traceback (most recent call last):
  File "/usr/local/bin/weekly_cleanup.py", line 18, in <module>
    from spyglass.common import AnalysisNwbfile, IntervalList
  File "/home/loren/Src/NWB/spyglass/src/spyglass/common/__init__.py", line 3, in <module>
    from spyglass.common.common_behav import (
  File "/home/loren/Src/NWB/spyglass/src/spyglass/common/common_behav.py", line 11, in <module>
    from spyglass.common.common_device import CameraDevice
  File "/home/loren/Src/NWB/spyglass/src/spyglass/common/common_device.py", line 9, in <module>
    schema = dj.schema("common_device")
  File "/home/loren/mambaforge/envs/spyglass/lib/python3.9/site-packages/datajoint/schemas.py", line 78, in __init__
    self.activate(schema_name)
  File "/home/loren/mambaforge/envs/spyglass/lib/python3.9/site-packages/datajoint/schemas.py", line 120, in activate
    self.connection = conn()
  File "/home/loren/mambaforge/envs/spyglass/lib/python3.9/site-packages/datajoint/connection.py", line 124, in conn
    user = input("Please enter DataJoint username: ")
EOFError: EOF when reading a line`

[edeno]

@lfrank I was able to run AnalysisNwbfile().nightly_cleanup(). IntervalList does not have a nightly cleanup currently. I think it has to do with running an outdated version. The current cleanup script is:

#!/usr/bin/env python

import os

# ignore datajoint+jupyter async warnings
import warnings

warnings.simplefilter("ignore", category=DeprecationWarning)
warnings.simplefilter("ignore", category=ResourceWarning)
# NOTE: "SPIKE_SORTING_STORAGE_DIR" -> "SPYGLASS_SORTING_DIR"
os.environ["SPYGLASS_SORTING_DIR"] = "/stelmo/nwb/spikesorting"


# import tables so that we can call them easily
from spyglass.common import AnalysisNwbfile
from spyglass.decoding.decoding_merge import DecodingOutput
from spyglass.spikesorting import SpikeSorting


def main():
    AnalysisNwbfile().nightly_cleanup()
    SpikeSorting().nightly_cleanup()
    DecodingOutput().cleanup()


if __name__ == "__main__":
    main()

The spikesorting cleanup doesn't actually work here however.