_site.yml

name: my-website
navbar:
  title: Analysis of Microbiome Data in R
  left:
  - text: Example analysis
    href: 02--quick_example.html
  - text: Workshop
    icon: fa-laptop
    menu:
    - text: Required software
      href: 00--required_software.html
    - text: Required datasets
      href: 00--required_data.html
    - text: Getting data into R
      href: 03--parsing.html
    - text: Manipulating taxonomic data
      href: 04--manipulating.html
    - text: Plotting taxonomic data
      href: 05--plotting.html
    - text: Data quality control
      href: 06--quality_control.html
    - text: Diversity and Ordination
      href: 07--diversity_stats.html
  - text: Appendices
    icon: fa-book
    menu:
    - text: Introduction to R
      href: 00--intro_to_r.html
    - text: Introduction to RStudio
      href: 00--intro_to_rstudio.html
    - text: Glossary
      href: 00--glossary.html
    - text: Website source code
      href: https://github.com/grunwaldlab/analysis_of_microbiome_community_data_in_r
  - text: About
    icon: fa-info
    href: about.html
output:
  html_document:
    theme: sandstone
    highlight: tango
    include:
      in_header: header.html
      after_body: footer.html
    css: styles.css
    lib_dir: site_libs
    self_contained: no
output_dir: docs