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Welcome to the UserGuide wiki!

Below is a list of useful prior art. These might get included (in some form or another) in the User Guide that is being created.

List of useful general resources:

• https://github.com/MDAnalysis/WorkshopHackathon2018
  • Workshop delivered in 2018. Has various notebooks that people went through. Has lots of code examples and highlights things that we felt were unintuitive and needed highlighting.
• https://github.com/Becksteinlab/MDAnalysis-workshop
  • Workshop given in 2015. Was used as the basis for the 2018 materials, but might have diverged.
• https://github.com/MDAnalysis/MDAnalysisCookbook
  • A lot of scripts and examples.

More specific examples:

• https://github.com/MDAnalysis/MDAnalysisTutorial/blob/master/notebooks/eth_hbonds.ipynb
  • A tutorial on manually finding hydrogen bonds in ethanol. Was written to try and show how the distance calculation building blocks come together.