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Hi Simon, Thanks for your effort of promptly fixing errors! Currently running DDW on the 21-outofmemoryerror-cuda-out-of-memory-in-refine-tomogram branch I stumbled across this error: [rank1]:[E ProcessGroupNCCL.cpp:523] ...
  • Phaips
  • 3
  • Opened 
    on Dec 5, 2024
  • #22

Hi Simon, When trying to predict a tomogram (ddw refine-tomogram) on an RTX-4090 card (24 GB of GPU memory) I always stumble upon the following error: │ /scicore/projects/scicore-p-structsoft/ubuntu/software/Miniconda3/miniconda3 ...
enhancement
  • rdrighetto
  • 11
  • Opened 
    on Dec 3, 2024
  • #21

@NKUashin reported the following problem: [...] I meet the same bug that multi-GPU fitting not works on my own data, but it works well on tutorial data. My config.yaml file is: shared: project_dir: ./project ...
bug
  • SimWdm
  • 3
  • Opened 
    on Dec 3, 2024
  • #20

Hi Simon, I just updated my DDW installation to try the multi-GPU fitting, but it doesn t seem to work. Everything goes fine but uses only 1 GPU. Please find the .yaml file as well as the SLURM submission ...
bug
  • rdrighetto
  • 5
  • Opened 
    on Dec 2, 2024
  • #19

Hi, Recently we tried DeepDeWedge with EMPIAR_11830, but we found the training loss was extremely low, in a scale of 1E-10. Although the training loss reduced as the num. of epoch grew (still in 1E-10 ...
  • MyElliot
  • 5
  • Opened 
    on Oct 24, 2024
  • #17

In the paper, I saw the term CC SNR. Could the authors provide the code related to SNR? Alternatively, can you share the approach used to evaluate SNR? Is it based on Fourier transform, ROI selection where ...
  • DIGGORER
  • 5
  • Opened 
    on Oct 22, 2024
  • #16

Currently, in config.yaml, only one GPU is accepted as an integer. It would be great to add multiple GPUs here to speed up the process. Thanks, Chaitali
enhancement
  • cbagwe
  • 11
  • Opened 
    on Oct 18, 2024
  • #15

Hi, Thank you for developing this tool—it s been working very well, especially in handling the organell missing wedge. However, its clear that most of the high-frequency side of data seems to be lost ...
  • amineuron
  • 3
  • Opened 
    on Oct 12, 2024
  • #14

Hello, When installing DeepDeWedge using the instructions pip==24.2 will be installed This causes a problem because installing pytorch lightning versions below 1.8.4 will fail with pip versions 23.2.1 ...
  • DcShepherd
  • 3
  • Opened 
    on Sep 9, 2024
  • #11

Hi, I seem to be getting the following keyword argument when trying to install a ddw on a new system Command : ddw fit-model --config ./config.yaml Output Seed set to 42 Missing logger folder: tutorial_project/logs ...
  • DcShepherd
  • 2
  • Opened 
    on Sep 9, 2024
  • #10
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