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Cannot specify columns in the dataset #1
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Hi, I have the same issue This is how I specify the columns:
Here it seems to be assigning the columns correctly:
I think something is happening with the column order in the format function. In my file, the column order is not the same as input arguments in column order in the original file: for both I run the same So reordering the file before trying to upload is a workaround for now. |
Hi @explodecomputer, I think I found what is causing this issue (ignore my above investigation). In determine_columns(), files in the format of IEU GWAS pipeline output are being read okay when rows=100 is specified (example 1). (example1) (example2) So the is.numeric() check fails. My suggestions:
or
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I'm getting this error message when I try to specify columns in the dataset:
I've checked at the beta column is definitely all numeric.
If I specify the columns using column position I get a different error:
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