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when I used the function extract_outcome_data, in for cycle to extract a immune cell GWAS dataset. It went error at the 50th cycle.
It shows as follows:
immu.cell.outcome <- list()
for (x in 1:length(immunecell.id)) {
repeat{
try({immu.cell <- extract_outcome_data(snps = exp.1e.06$SNP,outcomes = immunecell.id[x])})
if(exists("immu.cell")){break}
Sys.sleep(0.5)
}
immu.cell.outcome <- list.append(immu.cell.outcome,immu.cell)
rm(immu.cell)
print(str_c(x," has been processed !"))
}
……
Extracting data for 8 SNP(s) from 1 GWAS(s)
Finding proxies for 7 SNPs in outcome ebi-a-GCST90001440
Extracting data for 7 SNP(s) from 1 GWAS(s)
[1] "50 has been processed !"
Extracting data for 8 SNP(s) from 1 GWAS(s)
Error in api_query("associations", query = list(variant = variants, id = id, :
The following error was encountered in trying to query the MR-Base server:
Error in curl::curl_fetch_memory(url, handle = handle): Empty reply from server
Extracting data for 8 SNP(s) from 1 GWAS(s)
Error in api_query("associations", query = list(variant = variants, id = id, :
The following error was encountered in trying to query the MR-Base server:
Error in curl::curl_fetch_memory(url, handle = handle): Empty reply from server
Extracting data for 8 SNP(s) from 1 GWAS(s)
Error in api_query("associations", query = list(variant = variants, id = id, :
The following error was encountered in trying to query the MR-Base server:
Error in curl::curl_fetch_memory(url, handle = handle): Empty reply from server
Extracting data for 8 SNP(s) from 1 GWAS(s)
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when I used the function
extract_outcome_data
, in for cycle to extract a immune cell GWAS dataset. It went error at the 50th cycle.It shows as follows:
How to solve this.
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