Error in r$status_code : $ operator is invalid for atomic vectors

[Cyanyyq]

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exp_dat <- extract_instruments(outcomes='ukb-b-11842',p1=5e-07)
Error in r$status_code : $ operator is invalid for atomic vectors

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Error in r$status_code : $ operator is invalid for atomic vectors

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[lixiaodong1999]

anybody know this

[ikram2779]

having same issue since updating package regardless of the version.

ao <- available_outcomes()
Error in r$status_code : $ operator is invalid for atomic vectors

[ReznovHuang]

try
options(ieugwasr_api = 'gwas-api.mrcieu.ac.uk/')

edit: mine problem is occured when ao <- available_outcomes(access_token=NULL)

[ikram2779]

thank you. it worked as i

library(ieugwasr)

[xiaoyong2499]

options(ieugwasr_api = 'gwas-api.mrcieu.ac.uk/')
it make twosampleMR package work again!
Thanks a lot

[baiym13]

I also met this bug. Anyone can solve it?

[docZ9]

options(ieugwasr_api = 'gwas-api.mrcieu.ac.uk/')
it make twosampleMR package work again!
but it then present "Error in if (nrow(d) == 0) return(NULL) : 参数长度为零"

[SYFSQMR]

options(ieugwasr_api = 'gwas-api.mrcieu.ac.uk/')
It worked. Thanks to the people who came up with it. Thanks!

[Ayor1]

Exp_Out_Harmonized_Clumped <- clump_data(harmonized,clump_kb = 10000,clump_r2 = 0.1,clump_p1 = 1,clump_p2 = 1,pop = "EUR")
........
Clumping G2OjrT, 136968 variants, using EUR population reference
Error in r$status_code : $ operator is invalid for atomic vectors

This worked for me
options(ieugwasr_api = 'gwas-api.mrcieu.ac.uk/')
library(ieugwasr)

Thanks

[cainiaomengxin]

library(ieugwasr)
options(ieugwasr_api = 'gwas-api.mrcieu.ac.uk/')
After that, after I ran the following code, I still got the error "Error in r$status_code : $ operator is invalid for atomic vectors"

[zkhamis]

I used it work once then it gave the same error msg and stopped working with this error:No encoding supplied: defaulting to UTF-8.
Error in mtfrm.default(list(url = "http://gwas-api.mrcieu.ac.uk/ld/clump", :
cannot mtfrm

[kobe24king]

ao <- available_outcomes(options(ieugwasr_api = 'gwas-api.mrcieu.ac.uk/'))
wrong:api_query("gwasinfo", opengwas_jwt = opengwas_jwt):
The query to MR-Base exceeded 300 seconds and timed out. Potential reasons:
- You have a bad internet connection
- The query was very large and it timed out
- You have maxed out your allowance, and kept submitting requests, which led to your IP address being temporarily blocked. See here for details: https://api.opengwas.io/api/#allowance