From 182aca30d7a7f7b4bfd1c33e6b67da00c5b91432 Mon Sep 17 00:00:00 2001 From: straussmaximilian Date: Thu, 29 Jul 2021 13:03:45 +0200 Subject: [PATCH] DOCS clean nbs --- Dashboard.ipynb | 50 ++++++++++------------------- Uniprot_preprocessing.ipynb | 22 +++---------- Workflow.ipynb | 64 ++++++++++++++----------------------- 3 files changed, 46 insertions(+), 90 deletions(-) diff --git a/Dashboard.ipynb b/Dashboard.ipynb index 1df852e..1b1299b 100644 --- a/Dashboard.ipynb +++ b/Dashboard.ipynb @@ -9,7 +9,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -44,7 +44,7 @@ }, { "cell_type": "code", - "execution_count": 20, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -571,7 +571,7 @@ }, { "cell_type": "code", - "execution_count": 21, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -615,7 +615,7 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -662,7 +662,7 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -963,7 +963,7 @@ }, { "cell_type": "code", - "execution_count": 24, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1047,7 +1047,7 @@ }, { "cell_type": "code", - "execution_count": 25, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1077,7 +1077,7 @@ }, { "cell_type": "code", - "execution_count": 26, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1259,7 +1259,7 @@ }, { "cell_type": "code", - "execution_count": 27, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1331,10 +1331,8 @@ }, { "cell_type": "code", - "execution_count": 28, - "metadata": { - "scrolled": true - }, + "execution_count": null, + "metadata": {}, "outputs": [], "source": [ "### PREPROCESSING\n", @@ -1660,7 +1658,7 @@ }, { "cell_type": "code", - "execution_count": 29, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1791,7 +1789,7 @@ }, { "cell_type": "code", - "execution_count": 30, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1849,7 +1847,7 @@ }, { "cell_type": "code", - "execution_count": 31, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -1863,10 +1861,8 @@ }, { "cell_type": "code", - "execution_count": 32, - "metadata": { - "scrolled": true - }, + "execution_count": null, + "metadata": {}, "outputs": [ { "data": {}, @@ -1961,7 +1957,7 @@ " [3] ParamFunction(function)" ] }, - "execution_count": 32, + "execution_count": null, "metadata": { "application/vnd.holoviews_exec.v0+json": { "id": "1001" @@ -1980,18 +1976,6 @@ "display_name": "Python 3", "language": "python", "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.8.0" } }, "nbformat": 4, diff --git a/Uniprot_preprocessing.ipynb b/Uniprot_preprocessing.ipynb index 48ea1be..a796332 100644 --- a/Uniprot_preprocessing.ipynb +++ b/Uniprot_preprocessing.ipynb @@ -21,7 +21,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -396,7 +396,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -405,7 +405,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -421,7 +421,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -430,7 +430,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -450,18 +450,6 @@ "display_name": "Python [conda env:alphamap]", "language": "python", "name": "conda-env-alphamap-py" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.9.1" } }, "nbformat": 4, diff --git a/Workflow.ipynb b/Workflow.ipynb index 717ff26..0c2bf93 100644 --- a/Workflow.ipynb +++ b/Workflow.ipynb @@ -23,7 +23,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -32,7 +32,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -48,7 +48,7 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -57,7 +57,7 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -82,7 +82,7 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -91,7 +91,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -115,7 +115,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -124,7 +124,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -140,7 +140,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -150,10 +150,8 @@ }, { "cell_type": "code", - "execution_count": 10, - "metadata": { - "scrolled": false - }, + "execution_count": null, + "metadata": {}, "outputs": [ { "data": { @@ -7640,7 +7638,7 @@ }, { "cell_type": "code", - "execution_count": 11, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -7659,7 +7657,7 @@ }, { "cell_type": "code", - "execution_count": 12, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -7669,7 +7667,7 @@ }, { "cell_type": "code", - "execution_count": 13, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -15732,7 +15730,7 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -15749,7 +15747,7 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -15758,7 +15756,7 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -20475,7 +20473,7 @@ }, { "cell_type": "code", - "execution_count": 17, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -20492,7 +20490,7 @@ }, { "cell_type": "code", - "execution_count": 18, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -20501,7 +20499,7 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -25978,7 +25976,7 @@ }, { "cell_type": "code", - "execution_count": 20, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -25995,10 +25993,8 @@ }, { "cell_type": "code", - "execution_count": 21, - "metadata": { - "scrolled": true - }, + "execution_count": null, + "metadata": {}, "outputs": [], "source": [ "formatted_diann_data = format_input_data(df=diann_data, fasta = human_fasta, modification_exp = r'\\[.*?\\]')" @@ -26006,7 +26002,7 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": null, "metadata": {}, "outputs": [ { @@ -29381,18 +29377,6 @@ "display_name": "Python 3", "language": "python", "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.7.4" } }, "nbformat": 4,