From c9d28339c2398f3496e545a65ba847d6cb8ba3be Mon Sep 17 00:00:00 2001 From: Markus Sagen Date: Fri, 12 Jul 2024 11:27:26 +0200 Subject: [PATCH 1/4] feat(deps): Remove upper bounds and fix Typer bug --- .pre-commit-config.yaml | 77 +- Makefile | 9 - poetry.lock | 1690 +++++++++++++++++++++++++-------------- pyproject.toml | 380 +++++---- src/rejx/cli.py | 61 +- 5 files changed, 1366 insertions(+), 851 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 52ed411..5af676a 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,67 +1,92 @@ +# See https://pre-commit.com for more information +# See https://pre-commit.com/hooks.html for more hooks + +exclude: ^(profiling/|tests/data/) + default_language_version: python: python3.10 -default_stages: [ commit, manual ] +default_stages: [commit, manual] repos: - repo: https://github.com/pre-commit/pre-commit-hooks rev: v4.4.0 hooks: - id: check-added-large-files - args: [ --maxkb=55000 ] + args: [--maxkb=55000] - id: check-ast - id: check-docstring-first - id: check-executables-have-shebangs - id: check-json - id: pretty-format-json - args: [ --no-ensure-ascii, --autofix ] + args: [--no-ensure-ascii, --autofix] - id: check-toml - id: check-yaml exclude: k8s-helm - args: [ --unsafe ] - - id: check-case-conflict + args: [--unsafe] + - id: check-case-conflict # Check for files that would conflict in case-insensitive filesystems - id: check-merge-conflict - - id: debug-statements + - id: debug-statements # Check for debugger imports and py37+ `breakpoint()` calls in python source. - id: mixed-line-ending - args: [ --fix=auto ] + args: [--fix=auto] - id: name-tests-test - args: [ --pytest-test-first ] + args: [--pytest-test-first] - id: requirements-txt-fixer - id: trailing-whitespace + args: ["--markdown-linebreak-ext=md"] - id: end-of-file-fixer - # isort - - repo: https://github.com/timothycrosley/isort - rev: 5.12.0 - hooks: - - id: isort - args: [ --filter-files, --profile, "black" ] - - repo: https://github.com/asottile/add-trailing-comma rev: v3.1.0 hooks: - id: add-trailing-comma - # black - - repo: https://github.com/ambv/black - rev: 23.1.0 - hooks: - - id: black - - # black styling in docs: - repo: https://github.com/asottile/blacken-docs rev: v1.12.1 hooks: - id: blacken-docs - additional_dependencies: [ black==23.1.0 ] # Dependency on broken click (see black) + additional_dependencies: [black==24.4.0] entry: blacken-docs --skip-errors - # ruff + - repo: https://github.com/DanielNoord/pydocstringformatter + rev: v0.7.3 + hooks: + - id: pydocstringformatter + + - repo: https://github.com/abravalheri/validate-pyproject + rev: v0.15 + hooks: + - id: validate-pyproject + + - repo: https://github.com/executablebooks/mdformat + rev: 0.7.17 + hooks: + - id: mdformat + additional_dependencies: + - mdformat-mkdocs + - mdformat-admon + exclude: | + (?x)^( + docs/formatter/black\.md + | docs/\w+\.md + )$ + + - repo: https://github.com/igorshubovych/markdownlint-cli + rev: v0.39.0 + hooks: + - id: markdownlint-fix + exclude: | + (?x)^( + docs/formatter/black\.md + | docs/\w+\.md + )$ + - repo: https://github.com/charliermarsh/ruff-pre-commit - rev: v0.1.6 + rev: v0.4.10 hooks: - id: ruff - args: [ "--fix", "--preview", "--unsafe-fixes" ] + exclude: "scripts/.*" + args: [--fix, --preview, --unsafe-fixes, --exit-non-zero-on-fix] ci: autofix_commit_msg: 🎨 [pre-commit.ci] Auto format from pre-commit.com hooks diff --git a/Makefile b/Makefile index adaec12..174477e 100644 --- a/Makefile +++ b/Makefile @@ -12,15 +12,6 @@ pre-commit: setup-pre-commit install: poetry install -.PHONY: build -build: - echo "not implemented" - -# already done by the CI/CD pipeline -.PHONY: deploy -deploy: build - echo "not implemented" - .PHONY: lint lint: pre-commit diff --git a/poetry.lock b/poetry.lock index 63f86c0..e254649 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,15 @@ -# This file is automatically 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Deal with .rej file with minimal pain" authors = ["Markus Sagen "] keywords = ["git", "cookiecutter", "cruft", "rej"] @@ -10,227 +10,221 @@ homepage = "https://github.com/markussagen/rejx" repository = "https://github.com/markussagen/rejx" include = ["LICENSE"] - [tool.poetry.dependencies] -python = ">=3.8,<3.12" -typer = "^0.9.0" -rich = "^13.7.0" -tabulate = "^0.9.0" +python = ">=3.8,<4.0" +typer = ">=0.8.0" +rich = ">=12.0.0" [tool.poetry.group.dev.dependencies] # cmd pre-commit = "3.4.0" -# security -bandit = "^1.7.5" +ipykernel = "^6.20.0" # linter and formatter -black = "23.7.0" -isort = "5.12.0" -ruff = "0.1.6" -nbstripout = "0.6.1" +ruff = "0.4.10" # testing -pytest = "^7.4.2" -pytest-cov = "^4.1.0" -pytest-mock = "^3.11.1" -# Debug +pytest = ">=7.4.2" +pytest-cov = ">=4.1.0" +pytest-mock = ">=3.11.1" +pytest-clarity = "^1.0.1" +pytest-pretty = "^1.2.0" +pytest-env = "^1.1.3" +pytest-schema = "^0.1.2" +pytest-accept = "^0.1.10" +pytest-mypy = "*" +deepdiff = "^6.7.1" +# debug debugpy = "^1.8.0" ptvsd = "^4.3.2" -mypy = "^1.7.0" +devtools = ">=0.12.0" +# type checking +mypy = ">=1.2.0" +pyright = ">=1.1.356" +no-implicit-optional = "^1.3" +types-tabulate = ">=0.9.0.20240106" +# Testing template management and rej files cruft = "^2.15.0" -cookiecutter = "^2.5.0" [tool.ruff] +# -- cmd config +fix = true +preview = true +# settings line-length = 120 target-version = "py310" - -select = [ - "F", # pyflakes - "E", # pycodestyle - "W", # pycodestyle - "C90", # mccabe - "I", # isort - "N", # pep8-naming - "D", # pydocstyle - "UP", # pyupgrade - "YTT", # flake8-2020 - "ANN", # flake8-annotations - "ASYNC", # flake8-async - "S", # flake8-bandit - "BLE", # flake8-blind-except - "FBT", # flake8-boolean-trap - "A", # flake8-builtins - "COM", # flake8-commas - "B", # flake8-bugbear - "C4", # flake8-comprehensions - "DTZ", # flake8-datetimez - "T10", # flake8-debugger - "EM", # flake8-errmsg - "EXE", # flake8-executable - "FA", # flake8-future-annotations - "ISC", # flake8-implicit-str-concat - "ICN", # flake8-import-conventions - "G", # flake8-logging-format - "INP", # flake8-no-pep420 - "PIE", # flake8-pie - "T20", # flake8-print - "PYI", # flake8-pyi - "PT", # flake8-pytest-style - "Q", # flake8-quotes - "RSE", # flake8-raise - "RET", # flake8-return - "SLF", # flake8-self - "SLOT", # flake8-slots - "SIM", # flake8-simplify - "TID", # flake8-tidy-imports - "TCH", # flake8-type-checking - "INT", # flake8-gettext - "ARG", # flake8-unused-arguments - "PTH", # flake8-use-pathlib - "TD", # flake8-todos - "FIX", # flake8-fixme - "ERA", # eradicate - "PD", # pandas-vet - "PGH", # pygrep-hooks - "PL", # pylint - "TRY", # tryceratops - "NPY", # NumPy-specific rules - "AIR", # Airflow - "PERF", # Perflint - "LOG", # flake8-logging - "RUF", # Ruff-specific rules -] - -ignore = [ - "D101", - "D103", - "D203", - "D205", - "D213", - "D401", - "D404", - "C901", - "E203", - "E501", - "E741", - "G004", - "S104", - "UP006", # https://github.com/charliermarsh/ruff/pull/4427 - "UP007", - "PLR0913", - "PTH123", - "PTH207", - "I001", - "N801", - "N803", - "N806", - "RET504", # Allow extra assignment before return - "PD901", # Pandas - "ANN002", # Missing type annotation for `*args` - "ANN003", # Missing type annotation for `**kwargs` - "ANN101", # Missing type annotation for `self` - "ANN102", # Missing type annotation for `cls` - "ANN204", # Missing return type annotation for special method `__init__` - "ARG001", # Unused function argument: `kwargs` - "ARG002", # Unused function argument: `args` +builtins = ["_"] +cache-dir = "~/.cache/ruff" +src = ["src", "tests"] +include = ["*.py"] +extend-exclude = [ + "test_*.py", + "tests", + "docs", ] -# Allow autofix for all enabled rules (when `--fix`) is provided. -fixable = [ - "F", - "N", - "D", - "W", - "INP", - "PLC", - "PLR", - "PLW", - "RUF", - "SIM", - "Q", - "UP", - "TID", - "I", - "EM", - "FBT001", - "FBT002", - # Pandas - "PD002", - "PD015", -] -unfixable = [] - -exclude = [ - ".bzr", - ".direnv", - ".eggs", - ".git", - ".hg", - ".mypy_cache", - ".nox", - ".pants.d", - ".pytype", - ".ruff_cache", - ".svn", - ".tox", - ".venv", - "__pypackages__", - "_build", - "buck-out", - "build", - "dist", - "node_modules", - "venv", +[tool.ruff.format] +# -- cmd config +preview = true +# settings +quote-style = "double" +indent-style = "space" +skip-magic-trailing-comma = false +line-ending = "auto" +docstring-code-format = true +docstring-code-line-length = "dynamic" +exclude = ["**/__init__.py"] + +[tool.ruff.lint] +# -- cmd config +preview = true +# settings +flake8-quotes = { inline-quotes = "double", multiline-quotes = "double" } +flake8-tidy-imports = { ban-relative-imports = "all" } +flake8-comprehensions = { "allow-dict-calls-with-keyword-arguments" = true } # C408 - Allow dict calls with keyword arguments +isort = { known-first-party = ["heimdall", "tests"] } +mccabe = { max-complexity = 10 } +pydocstyle = { convention = "google" } +exclude = ["*.ipynb"] +ignore = ["E203", "E501", "FIX002", "PTH123", "C901", "PD101", "COM812", "PTH118", "PTH207", "PTH207"] +extend-select = ["Q", "RUF100", "C90", "UP", "I", "T", "B", "F", "Q", "COM812"] # "D", +extend-ignore = ["D105", "D107", "D205", "D415", "EM101", "G004", "ARG001", "ARG002", "PD901", "RET504"] +fixable = ["F", "N", "D", "W", "INP", "PLC", "PLR", "PLW", "RUF", "SIM", "Q", "UP", "TID", "I", "EM", "FBT", "PD", "E501"] +extend-safe-fixes = ["E", "F401", "E501"] +extend-unsafe-fixes = ["E", "F401", "E501"] +select = [ + "F", # pyflakes + "E", # pycodestyle + "W", # pycodestyle + "C90", # mccabe + "I", # isort + # "D", # pydocstyle + "ASYNC", # flake8-async + "A", # flake8-builtins + "COM", # flake8-commas + "B", # flake8-bugbear + "C4", # flake8-comprehensions + "DTZ", # flake8-datetimez + "T10", # flake8-debugger + "EM", # flake8-errmsg + "EXE", # flake8-executable + "FA", # flake8-future-annotations + "ICN", # flake8-import-conventions + "G", # flake8-logging-format + "INP", # flake8-no-pep420 + "PIE", # flake8-pie + "T20", # flake8-print + "PT", # flake8-pytest-style + "Q", # flake8-quotes + "RSE", # flake8-raise + "RET", # flake8-return + "SIM", # flake8-simplify + "TID", # flake8-tidy-imports + "TCH", # flake8-type-checking + "INT", # flake8-gettext + "ARG", # flake8-unused-arguments + "PTH", # flake8-use-pathlib + "FIX", # flake8-fixme + "ERA", # eradicate + "PD", # pandas-vet + "PGH", # pygrep-hooks + "NPY", # NumPy-specific rules + "PERF", # Perflint + "RUF", # Ruff-specific rules ] -[tool.ruff.mccabe] -max-complexity = 10 - -# Ignore import violations in all `__init__.py` files. -[tool.ruff.per-file-ignores] +[tool.ruff.lint.per-file-ignores] "__init__.py" = ["D104", "E402", "F401", "F403", "F811", "W292"] "test_*.py" = ["ANN201", "S101"] -[tool.isort] -include_trailing_comma = true -use_parentheses = true -ensure_newline_before_comments = true -profile = "black" -line_length = 120 +[tool.coverage.run] +omit = [ + '*/.local/*', + '__init__.py', + 'tests/*', + '*/tests/*', + '.venv/*' +] + +[tool.coverage.report] +fail_under = 0 # TODO: increase this +show_missing = true +precision = 2 +skip_empty = true +exclude_lines = [ + 'pragma: no cover', + 'raise NotImplementedError', + 'if TYPE_CHECKING:', + 'if typing.TYPE_CHECKING:', + '@overload', + '@typing.overload', + '\(Protocol\):$', + 'typing.assert_never', + 'assert_never', +] -[tool.black] -skip-string-normalization = true -line-length = 120 -include = '\.pyi?$' -exclude = ''' -/( - \.git - | \.mypy_cache - | \.ruff_cache - | \.pytest_cache - | \.tox - | \.venv - | _build - | buck-out - | build - | dist - | notebooks -)/ -''' +[tool.coverage.paths] +source = ['src/rejx/'] [tool.pytest.ini_options] -addopts = """ ---cov-report term-missing \ ---cov src/mmm_prediction -ra""" +# https://github.com/kedro-org/kedro/blob/main/pyproject.toml +testpaths = ["tests", "src/rejx"] +filterwarnings = ['error'] +xfail_strict = true +# pytest flags +addopts = [ + '--cov-context', 'test', + '--cov-config', 'pyproject.toml', + '--cov-report', 'term', + '--cov-report', 'html:reports/coverage-html', + '--cov-report', 'xml:reports/coverage.xml', + '--cov-report', 'term-missing', + '--cov=.', + '--no-cov-on-fail', + '--ignore=docs', + '--capture=no', + '--log-cli-level=WARNING', + '-ra', + '-W', 'ignore' +] +# pytest-md-report +md_report = true +md_report_verbose = 0 +md_report_color = "auto" +# doctest options +doctest_optionflags = [ + "ELLIPSIS", + "NORMALIZE_WHITESPACE", + "IGNORE_EXCEPTION_DETAIL" +] -[tool.coverage.report] -fail_under = 0 -show_missing = true -exclude_lines = ["pragma: no cover", "raise NotImplementedError"] +[tool.pytest_env] +# Mock some of the envs in `src/heimdall/constants.py` +ENV = "cicd" +LOG_LEVEL = "CRITICAL" # INFO, WARNING, ERROR, CRITICAL -[[tool.mypy.overrides]] -module = [] +[tool.mypy] +plugins = [ ] follow_imports = "silent" +warn_redundant_casts = true +warn_unused_ignores = true +disallow_any_generics = true +check_untyped_defs = true +no_implicit_reexport = true follow_imports_for_stubs = true ignore_missing_imports = true +disallow_untyped_defs = true + +[tool.pyright] +include = [ "src/rejx" ] +exclude = [ ".venv" ] +venvPath = "." +venv = ".venv" + +[tool.codespell] +# codespell -L 'f1,llm,llms,map,mape,nmae,r2,roc' -S '.git,.venv,data,.env*,poetry*,*.log,*.csv,*.ipynb,*.html' +skip = ".git,.venv,data,.env*,poetry*,*.log,*.csv,*.ipynb,*.html" +ignore-words-list = '' +quiet-level = 3 +count = true [tool.poetry.scripts] rejx = "rejx.__main__:app" diff --git a/src/rejx/cli.py b/src/rejx/cli.py index ab4683a..186efb7 100644 --- a/src/rejx/cli.py +++ b/src/rejx/cli.py @@ -7,7 +7,6 @@ import pathlib import re from difflib import unified_diff -from typing import Annotated, Optional import typer from rich.console import Console @@ -119,7 +118,9 @@ def apply_changes(target_lines: list[str], rej_lines: list[str]) -> list[str]: new_lines.extend(target_lines[len(new_lines) : hunk_start]) continue - chunks_not_in_rej_file = len(new_lines) + len(current_hunk_changes) < len(target_lines) + chunks_not_in_rej_file = len(new_lines) + len(current_hunk_changes) < len( + target_lines, + ) if processing_hunk: if line.startswith("+"): @@ -127,7 +128,9 @@ def apply_changes(target_lines: list[str], rej_lines: list[str]) -> list[str]: current_hunk_changes.append(line[1:].rstrip("\n") + "\n") # Context line: keep this line from the original file elif not line.startswith("-") and chunks_not_in_rej_file: - current_hunk_changes.append(target_lines[len(new_lines) + len(current_hunk_changes)]) + current_hunk_changes.append( + target_lines[len(new_lines) + len(current_hunk_changes)], + ) # Apply the last hunk if processing_hunk: @@ -237,7 +240,13 @@ def diff() -> None: modified_lines = apply_changes(target_lines.copy(), rej_lines) diff = "".join( - unified_diff(target_lines, modified_lines, fromfile=target_file_path, tofile=rej_file, lineterm=""), + unified_diff( + target_lines, + modified_lines, + fromfile=target_file_path, + tofile=rej_file, + lineterm="", + ), ) file_logs.append({"filename": rej_file, "diff": diff}) @@ -247,11 +256,25 @@ def diff() -> None: # Display diff with console.pager(styles=True): - console.print(Text("Diff Preview (use arrow keys or Vim bindings to navigate, q to quit)", style="bold blue")) + console.print( + Text( + "Diff Preview (use arrow keys or Vim bindings to navigate, q to quit)", + style="bold blue", + ), + ) for logs in file_logs: console.rule(f"\n{logs['filename']}\n", align="left") - console.print(Syntax(logs["diff"], "diff", theme="monokai", word_wrap=True, line_numbers=True), style="dim") + console.print( + Syntax( + logs["diff"], + "diff", + theme="monokai", + word_wrap=True, + line_numbers=True, + ), + style="dim", + ) def build_file_tree(rej_files: list) -> Tree: @@ -281,7 +304,9 @@ def build_file_tree(rej_files: list) -> Tree: console.print(tree) ``` """ - tree = Tree(":open_file_folder: Rejected Files Tree", guide_style="bold bright_blue") + tree = Tree( + ":open_file_folder: Rejected Files Tree", guide_style="bold bright_blue", + ) node_dict = {} for rej_file in rej_files: @@ -289,7 +314,9 @@ def build_file_tree(rej_files: list) -> Tree: current_node = tree for part in path_parts: - key = os.path.join(*path_parts[: path_parts.index(part) + 1]) # noqa: PTH118 + key = os.path.join( + *path_parts[: path_parts.index(part) + 1], + ) if key not in node_dict: # If part is a directory, color it blue/purple is_dir = part != path_parts[-1] @@ -301,7 +328,9 @@ def build_file_tree(rej_files: list) -> Tree: @app.command() -def ls(view: Annotated[Optional[str], typer.Option("list", help="View as 'list' or 'tree'")] = "list") -> None: +def ls( + view: str | None = typer.Option("list", help="View as 'list' or 'tree'"), +) -> None: """Lists all .rej files in the current directory and subdirectories. Supports different view formats. @@ -341,9 +370,13 @@ def ls(view: Annotated[Optional[str], typer.Option("list", help="View as 'list' @app.command() def clean( - preview: bool = typer.Option(False, help="Preview files before deleting"), # noqa: FBT001,FBT003 + preview: bool = typer.Option( + False, help="Preview files before deleting", + ), ) -> None: - """Deletes all .rej files in the current directory and subdirectories. Optional preview before deletion. + """Deletes all .rej files in the current directory and subdirectories. + + Optional preview before deletion. Args: ---- @@ -371,14 +404,16 @@ def clean( console.print("[bold red]These files will be deleted:[/bold red]") for file in rej_files: console.print(f" - {file}") - if not Confirm.ask("[bold yellow]Do you want to continue with deletion?[/bold yellow]"): + if not Confirm.ask( + "[bold yellow]Do you want to continue with deletion?[/bold yellow]", + ): raise typer.Exit try: for file in rej_files: pathlib.Path(file).unlink() console.print(f"[green]Deleted:[/green] {file}") - except Exception as e: # noqa: BLE001 + except Exception as e: console.print(f"[red]Error deleting {file}:[/red] {e}") console.print("[bold green]Deletion complete.[/bold green]") From 2dda16eb8e131b1961e831fe7e68b2e8b0c20c3c Mon Sep 17 00:00:00 2001 From: Markus Sagen Date: Fri, 12 Jul 2024 11:29:38 +0200 Subject: [PATCH 2/4] feat(deps): Remove upper bounds and fix Typer bug --- pyproject.toml | 2 +- src/rejx/cli.py | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 2a03172..24f3bc6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -84,7 +84,7 @@ isort = { known-first-party = ["heimdall", "tests"] } mccabe = { max-complexity = 10 } pydocstyle = { convention = "google" } exclude = ["*.ipynb"] -ignore = ["E203", "E501", "FIX002", "PTH123", "C901", "PD101", "COM812", "PTH118", "PTH207", "PTH207"] +ignore = ["E203", "E501", "FIX002", "PTH123", "C901", "PD101", "COM812", "PTH118", "PTH207", "PTH207", "UP007"] # Typer does not support UP007 extend-select = ["Q", "RUF100", "C90", "UP", "I", "T", "B", "F", "Q", "COM812"] # "D", extend-ignore = ["D105", "D107", "D205", "D415", "EM101", "G004", "ARG001", "ARG002", "PD901", "RET504"] fixable = ["F", "N", "D", "W", "INP", "PLC", "PLR", "PLW", "RUF", "SIM", "Q", "UP", "TID", "I", "EM", "FBT", "PD", "E501"] diff --git a/src/rejx/cli.py b/src/rejx/cli.py index 186efb7..22b2a5f 100644 --- a/src/rejx/cli.py +++ b/src/rejx/cli.py @@ -7,6 +7,7 @@ import pathlib import re from difflib import unified_diff +from typing import Optional import typer from rich.console import Console @@ -329,7 +330,7 @@ def build_file_tree(rej_files: list) -> Tree: @app.command() def ls( - view: str | None = typer.Option("list", help="View as 'list' or 'tree'"), + view: Optional[str] = typer.Option("list", help="View as 'list' or 'tree'"), ) -> None: """Lists all .rej files in the current directory and subdirectories. From 2af55dca7e664c39f27929db9a3bc700fee97f2d Mon Sep 17 00:00:00 2001 From: Markus Sagen Date: Fri, 12 Jul 2024 15:46:57 +0200 Subject: [PATCH 3/4] Update CI/CD, .pre-commit and move from Makefile to Justfile --- .editorconfig | 17 ++ .github/workflows/test-and-lint.yml | 106 +++++----- .markdownlint.yaml | 32 +++ .pre-commit-config.yaml | 8 + README.md | 20 +- justfile | 96 +++++++++ poetry.lock | 306 +++++++++++++++++++++++++++- pyproject.toml | 11 +- src/rejx/__init__.py | 4 +- src/rejx/__main__.py | 5 +- src/rejx/cli.py | 7 +- src/rejx/exceptions.py | 1 + src/rejx/logo.py | 3 +- src/rejx/version.py | 1 + 14 files changed, 553 insertions(+), 64 deletions(-) create mode 100644 .editorconfig create mode 100644 .markdownlint.yaml create mode 100644 justfile diff --git a/.editorconfig b/.editorconfig new file mode 100644 index 0000000..4eef00f --- /dev/null +++ b/.editorconfig @@ -0,0 +1,17 @@ +# http://editorconfig.org +root = true + +[*] +indent_style = space +trim_trailing_whitespace = true +insert_final_newline = true +charset = utf-8 +end_of_line = lf +indent_size = 2 + +[*.{rs,py,pyi,toml,justfile}] +indent_size = 4 + +[*.{md,snap}] +max_line_length = 100 +trim_trailing_whitespace = false diff --git a/.github/workflows/test-and-lint.yml b/.github/workflows/test-and-lint.yml index 4486846..743be71 100644 --- a/.github/workflows/test-and-lint.yml +++ b/.github/workflows/test-and-lint.yml @@ -8,68 +8,78 @@ on: env: PROJECT_NAME: rejx - PYTHON_VERSION: "3.10.10" + PYTHON_VERSION: 3.10.10 + POETRY_VERSION: 1.7.1 jobs: - install_dependencies: - name: Install Dependencies + test_and_lint: + name: Lint and Test runs-on: ubuntu-latest + outputs: + cache-key: ${{ steps.cache-keys.outputs.cache-key }} steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v4 - with: - python-version: ${{ env.PYTHON_VERSION }} - cache: "pip" + ################################################################### + # # + # Setup Project # + # # + ################################################################### + - name: Setup Justfile + uses: extractions/setup-just@v1 + - name: Check justfile linting + run: 'just --unstable --fmt --check || "justfile is not formatted!\nrun: `just fmt` and commit again"' - - name: Install dependencies - run: | - pip install pytest-cov==4.1.0 pytest==7.4.3 \ - poetry==1.7.1 poetry-plugin-export==1.6.0 \ - pre-commit==3.5.0 ruff==0.1.6 - - linting: - name: Code Linting - needs: install_dependencies - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 + - name: Setup SSH agent and key + uses: webfactory/ssh-agent@v0.7.0 + with: + ssh-private-key: ${{ secrets.GH_DEPLOY_KEY_ML_UTILS }} - - uses: actions/setup-python@v4 + - name: Setup Python + uses: actions/setup-python@v4 with: python-version: ${{ env.PYTHON_VERSION }} - cache: "pip" + cache: pip - - name: Install dependencies + - name: Setup Poetry for Python + uses: abatilo/actions-poetry@v2 + with: + python-version: ${{ env.POETRY_VERSION }} + - name: Setup a local virtual environment (if no poetry.toml file) run: | - pip install pytest-cov==4.1.0 pytest==7.4.3 \ - poetry==1.7.1 poetry-plugin-export==1.6.0 \ - pre-commit==3.5.0 ruff==0.1.6 + poetry config virtualenvs.create true --local + poetry config virtualenvs.in-project true --local + - uses: actions/cache@v3 + name: Define a cache for the virtual environment based on the dependencies lock file + with: + path: ./.venv + key: venv-${{ hashFiles('poetry.lock') }} - - name: Run Code Linting - run: | - ruff --fix --preview --unsafe-fixes src - make lint + - name: Install the project dependencies + run: just setup cicd - unit_tests: - name: Unit Tests - needs: install_dependencies - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 + ################################################################### + # # + # Linting and Format # + # # + ################################################################### + - name: Lint code + run: just lint - - uses: actions/setup-python@v4 - with: - python-version: ${{ env.PYTHON_VERSION }} - cache: "pip" + ################################################################### + # # + # Testing # + # # + ################################################################### + - name: Run unit test + run: just test - - name: Install dependencies - run: | - pip install pytest-cov==4.1.0 pytest==7.4.3 \ - poetry==1.7.1 poetry-plugin-export==1.6.0 \ - pre-commit==3.5.0 ruff==0.1.6 + ################################################################### + # # + # CI/CD Bots # + # # + ################################################################### - - name: Run unit tests - run: | - pip install -e . - make test + # https://pypi.org/project/pytest-md-report/ + - name: Run tests with reports + run: poetry run pytest --md-report --md-report-flavor gfm --md-report-output report.md diff --git a/.markdownlint.yaml b/.markdownlint.yaml new file mode 100644 index 0000000..7278a25 --- /dev/null +++ b/.markdownlint.yaml @@ -0,0 +1,32 @@ +# default to true for all rules +default: true + +# MD007/unordered-list-indent +# https://github.com/DavidAnson/markdownlint/blob/main/doc/Rules.md#md007---unordered-list-indentation +MD007: + indent: 4 + +# MD013/line-length +# https://github.com/DavidAnson/markdownlint/blob/main/doc/Rules.md#md013---line-length +MD013: false + +# MD024/no-duplicate-heading +# https://github.com/DavidAnson/markdownlint/blob/main/doc/Rules.md#md024---multiple-headings-with-the-same-content +MD024: + # Allow when nested under different parents e.g. CHANGELOG.md + siblings_only: true + +# MD029/ordered-list-item-prefix +# https://github.com/DavidAnson/markdownlint/blob/main/doc/Rules.md#md029---ordered-list-item-prefix +MD029: + # This makes reviewing changes of ordered list easier + # https://mdformat.readthedocs.io/en/stable/users/style.html#ordered-lists + style: one + +# MD033/no-inline-html +# https://github.com/DavidAnson/markdownlint/blob/main/doc/Rules.md#md033---inline-html +MD033: false + +# MD041/first-line-h1 +# https://github.com/DavidAnson/markdownlint/blob/main/doc/Rules.md#md041---first-line-in-a-file-should-be-a-top-level-heading +MD041: false diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 5af676a..2c94483 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -88,6 +88,14 @@ repos: exclude: "scripts/.*" args: [--fix, --preview, --unsafe-fixes, --exit-non-zero-on-fix] + - repo: https://github.com/codespell-project/codespell + rev: v2.2.4 + hooks: + - id: codespell + additional_dependencies: + - tomli + exclude: '^poetry\.lock$' + ci: autofix_commit_msg: 🎨 [pre-commit.ci] Auto format from pre-commit.com hooks autoupdate_commit_msg: ⬆ [pre-commit.ci] pre-commit autoupdate diff --git a/README.md b/README.md index 57131b3..e090c18 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,5 @@ # RejX + Deal with `.rej` files with reasonable pain The application is designed to work with .rej files generated during patch application failures or from updating git templates using tools s.a. `cookiecutter` or `cruft` @@ -14,27 +15,32 @@ This documentation provides a clear guide on how to interact with the rejx Typer ## Setup ```shell +# Pip pip install rejx -``` +# Poetry +poetry add rejx +``` ## Usage + Your Python Typer application, rejx, provides a command line interface (CLI) for managing .rej files, which are typically generated when patches fail to apply cleanly. Below, I'll detail each command, its purpose, and how to use it, including optional arguments. -#### `fix` +### `fix` + Purpose: Applies the changes from a specified .rej file to its corresponding original file. Usage: `rejx fix path/to/file.rej` -#### `fix_all` +### `fix_all` Purpose: Searches for all .rej files in the current directory and subdirectories, then applies their changes to the corresponding original files. Usage: `rejx fix_all` -#### `diff` +### `diff` Purpose: Displays the differences between the current files and the changes proposed in the .rej files. Usage: @@ -43,7 +49,7 @@ Usage: Note: This command uses a pager for output. Use arrow keys or Vim bindings to navigate, and q to quit. -#### `ls` +### `ls` Purpose: Lists all .rej files in the current directory and subdirectories. By default, it lists files, but can also display them in a tree structure. Usage: @@ -59,7 +65,7 @@ For list view (default): `rejx ls --view list` -#### `clean` +### `clean` Purpose: Deletes all .rej files in the current directory and subdirectories. It has an optional preview feature. Usage: @@ -69,3 +75,5 @@ Usage: With preview: `rejx clean --preview` + +______________________________________________________________________ diff --git a/justfile b/justfile new file mode 100644 index 0000000..7db572e --- /dev/null +++ b/justfile @@ -0,0 +1,96 @@ +set shell := ["bash", "-uc"] +set dotenv-load := true + +RED := "\\033[31m" +GREEN := "\\033[32m" +PURPLE := "\\033[35m" +YELLOW := "\\033[33m" +BOLD := "\\033[1m" +RESET := "\\033[0m" +NC := "\\033[0m" + +setup: _git-init _poetry + #!/usr/bin/env bash + # https://github.com/casey/just?tab=readme-ov-file#safer-bash-shebang-recipes + set -euo pipefail + + poetry env use python + poetry install + just _pre-commit + +check: _poetry + poetry check -vvv + +pre-commit: _pre-commit + poetry run pre-commit run --all-files + +format: _poetry + poetry run ruff check --preview --fix . + poetry run ruff format --preview . + +lint: pre-commit + @just fmt + +codespell: + poetry run pre-commit run codespell --all-files + +# TODO: Added in doctest PR +# testdoc: _poetry +# poetry run pytest -vv --doctest-modules --doctest-glob="*.md" --doctest-mdcodeblocks + +testcov: + @echo "running test coverage" + @poetry run coverage run \ + --source=src/rejx \ + --omit="*/__init__.py,__main__.py,settings.py" \ + -m pytest -vv --durations=10 --disable-warnings tests + @echo "building coverage report" + @poetry run coverage report + @echo "building coverage html" + @poetry run coverage html + @echo "building coverage lcov" + @poetry run coverage lcov + +test: testcov codespell + +# TODO: Added in doctest PR +# test: testcov codespell testdoc + +docs: _poetry + poetry run mkdocs build --strict + +clean: + @echo 'cleaning up cached files from python ".pyc, .pyo, __pycache__/"' + find . -type f -name '*.py[co]' -delete -o -type d -name __pycache__ -delete + @echo 'cleaning up the data directory' + find data -type f ! -name ".gitkeep" ! -path "data/01_raw/tests/*" -delete + +# Clean tmp files and .venv folder +deepclean: clean + @echo 'removing .venv folder' + rm -rf .venv + +################################################################ +# Setup +################################################################ + +_git-init: + @if [ ! -d ".git" ]; then \ + git init > /dev/null 2>&1; \ + fi + +_poetry: + @poetry --version || echo "Poetry is not installed. Please install poetry" + +_pre-commit: _poetry + poetry run pre-commit install + poetry run pre-commit install --hook-type commit-msg + poetry run pre-commit install --install-hooks + +################################################################ +# Template formatting +################################################################ + +# Format justfile +fmt check="": + just --unstable --fmt {{ check }} diff --git a/poetry.lock b/poetry.lock index e254649..03f14a7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -438,6 +438,25 @@ typer = ">=0.4.0" [package.extras] pyproject = ["toml (>=0.10)"] +[[package]] +name = "dataproperty" +version = "1.0.1" +description = "Python library for extract property from data." +optional = false +python-versions = ">=3.7" +files = [ + {file = "DataProperty-1.0.1-py3-none-any.whl", hash = "sha256:0b8b07d4fb6453fcf975b53d35dea41f3cfd69c9d79b5010c3cf224ff0407a7a"}, + {file = "DataProperty-1.0.1.tar.gz", hash = "sha256:723e5729fa6e885e127a771a983ee1e0e34bb141aca4ffe1f0bfa7cde34650a4"}, +] + +[package.dependencies] +mbstrdecoder = ">=1.0.0,<2" +typepy = {version = ">=1.2.0,<2", extras = ["datetime"]} + +[package.extras] +logging = ["loguru (>=0.4.1,<1)"] +test = ["pytest (>=6.0.1)", "pytest-md-report (>=0.3)", "tcolorpy (>=0.1.2)"] + [[package]] name = "debugpy" version = "1.8.2" @@ -539,6 +558,20 @@ files = [ [package.extras] test = ["pytest (>=6)"] +[[package]] +name = "execnet" +version = "2.1.1" +description = "execnet: rapid multi-Python deployment" +optional = false +python-versions = ">=3.8" +files = [ + {file = "execnet-2.1.1-py3-none-any.whl", hash = "sha256:26dee51f1b80cebd6d0ca8e74dd8745419761d3bef34163928cbebbdc4749fdc"}, + {file = "execnet-2.1.1.tar.gz", hash = "sha256:5189b52c6121c24feae288166ab41b32549c7e2348652736540b9e6e7d4e72e3"}, +] + +[package.extras] +testing = ["hatch", "pre-commit", "pytest", "tox"] + [[package]] name = "executing" version = "2.0.1" @@ -962,6 +995,23 @@ files = [ [package.dependencies] traitlets = "*" +[[package]] +name = "mbstrdecoder" +version = "1.1.3" +description = "mbstrdecoder is a Python library for multi-byte character string decoder" +optional = false +python-versions = ">=3.7" +files = [ + {file = "mbstrdecoder-1.1.3-py3-none-any.whl", hash = "sha256:d66c1ed3f2dc4e7c5d87cd44a75be10bc5af4250f95b38bbaedd7851308ce938"}, + {file = "mbstrdecoder-1.1.3.tar.gz", hash = "sha256:dcfd2c759322eb44fe193a9e0b1b86c5b87f3ec5ea8e1bb43b3e9ae423f1e8fe"}, +] + +[package.dependencies] +chardet = ">=3.0.4,<6" + +[package.extras] +test = ["Faker (>=1.0.2)", "pytest (>=6.0.1)", "pytest-md-report (>=0.1)"] + [[package]] name = "mdurl" version = "0.1.2" @@ -1107,6 +1157,21 @@ files = [ qa = ["flake8 (==5.0.4)", "mypy (==0.971)", "types-setuptools (==67.2.0.1)"] testing = ["docopt", "pytest"] +[[package]] +name = "pathvalidate" +version = "3.2.0" +description = "pathvalidate is a Python library to sanitize/validate a string such as filenames/file-paths/etc." +optional = false +python-versions = ">=3.7" +files = [ + {file = "pathvalidate-3.2.0-py3-none-any.whl", hash = "sha256:cc593caa6299b22b37f228148257997e2fa850eea2daf7e4cc9205cef6908dee"}, + {file = "pathvalidate-3.2.0.tar.gz", hash = "sha256:5e8378cf6712bff67fbe7a8307d99fa8c1a0cb28aa477056f8fc374f0dff24ad"}, +] + +[package.extras] +docs = ["Sphinx (>=2.4)", "sphinx-rtd-theme (>=1.2.2)", "urllib3 (<2)"] +test = ["Faker (>=1.0.8)", "allpairspy (>=2)", "click (>=6.2)", "pytest (>=6.0.1)", "pytest-discord (>=0.1.4)", "pytest-md-report (>=0.4.1)"] + [[package]] name = "pexpect" version = "4.9.0" @@ -1337,6 +1402,42 @@ nodeenv = ">=1.6.0" all = ["twine (>=3.4.1)"] dev = ["twine (>=3.4.1)"] +[[package]] +name = "pytablewriter" +version = "1.2.0" +description = "pytablewriter is a Python library to write a table in various formats: AsciiDoc / CSV / Elasticsearch / HTML / JavaScript / JSON / LaTeX / LDJSON / LTSV / Markdown / MediaWiki / NumPy / Excel / Pandas / Python / reStructuredText / SQLite / TOML / TSV / YAML." +optional = false +python-versions = ">=3.7" +files = [ + {file = "pytablewriter-1.2.0-py3-none-any.whl", hash = "sha256:4a30e2bb4bf5bc1069b1d2b2bc41947577c4517ab0875b23a5b194d296f543d8"}, + {file = "pytablewriter-1.2.0.tar.gz", hash = "sha256:0204a4bb684a22140d640f2599f09e137bcdc18b3dd49426f4a555016e246b46"}, +] + +[package.dependencies] +DataProperty = ">=1.0.1,<2" +mbstrdecoder = ">=1.0.0,<2" +pathvalidate = ">=2.3.0,<4" +setuptools = ">=38.3.0" +tabledata = ">=1.3.1,<2" +tcolorpy = ">=0.0.5,<1" +typepy = {version = ">=1.3.2,<2", extras = ["datetime"]} + +[package.extras] +all = ["PyYAML (>=3.11,<7)", "SimpleSQLite (>=1.3.2,<2)", "XlsxWriter (>=0.9.6,<4)", "dominate (>=2.1.5,<3)", "elasticsearch (>=8.0.1,<9)", "loguru (>=0.4.1,<1)", "pandas (>=0.25.3,<3)", "pytablereader (>=0.31.3,<2)", "pytablewriter-altcol-theme (>=0.1.0,<1)", "pytablewriter-altrow-theme (>=0.2.0,<1)", "simplejson (>=3.8.1,<4)", "toml (>=0.9.3,<1)", "xlwt"] +docs = ["PyYAML (>=3.11,<7)", "SimpleSQLite (>=1.3.2,<2)", "Sphinx (>=2.4)", "XlsxWriter (>=0.9.6,<4)", "dominate (>=2.1.5,<3)", "elasticsearch (>=8.0.1,<9)", "loguru (>=0.4.1,<1)", "pandas (>=0.25.3,<3)", "pytablereader (>=0.31.3,<2)", "pytablewriter-altcol-theme (>=0.1.0,<1)", "pytablewriter-altrow-theme (>=0.2.0,<1)", "simplejson (>=3.8.1,<4)", "sphinx-rtd-theme (>=1.2.2)", "toml (>=0.9.3,<1)", "xlwt"] +es = ["elasticsearch (>=8.0.1,<9)"] +es8 = ["elasticsearch (>=8.0.1,<9)"] +excel = ["XlsxWriter (>=0.9.6,<4)", "xlwt"] +from = ["pytablereader (>=0.31.3,<2)"] +html = ["dominate (>=2.1.5,<3)"] +logging = ["loguru (>=0.4.1,<1)"] +pandas = ["pandas (>=0.25.3,<3)"] +sqlite = ["SimpleSQLite (>=1.3.2,<2)"] +test = ["PyYAML (>=3.11,<7)", "SimpleSQLite (>=1.3.2,<2)", "XlsxWriter (>=0.9.6,<4)", "beautifulsoup4 (>=4.10)", "dominate (>=2.1.5,<3)", "elasticsearch (>=8.0.1,<9)", "loguru (>=0.4.1,<1)", "pandas (>=0.25.3,<3)", "pytablereader (>=0.31.3,<2)", "pytablereader[excel,sqlite] (>=0.31.3)", "pytablewriter-altcol-theme (>=0.1.0,<1)", "pytablewriter-altrow-theme (>=0.2.0,<1)", "pytest (>=6.0.1)", "pytest-md-report (>=0.4.1)", "simplejson (>=3.8.1,<4)", "sqliteschema (>=1.3.0)", "tablib (>=3.2.0)", "toml (>=0.9.3,<1)", "xlwt"] +theme = ["pytablewriter-altcol-theme (>=0.1.0,<1)", "pytablewriter-altrow-theme (>=0.2.0,<1)"] +toml = ["toml (>=0.9.3,<1)"] +yaml = ["PyYAML (>=3.11,<7)"] + [[package]] name = "pytest" version = "8.2.2" @@ -1373,6 +1474,41 @@ files = [ [package.dependencies] pytest = ">=6" +[[package]] +name = "pytest-asyncio" +version = "0.23.7" +description = "Pytest support for asyncio" +optional = false +python-versions = ">=3.8" +files = [ + {file = "pytest_asyncio-0.23.7-py3-none-any.whl", hash = "sha256:009b48127fbe44518a547bddd25611551b0e43ccdbf1e67d12479f569832c20b"}, + {file = "pytest_asyncio-0.23.7.tar.gz", hash = "sha256:5f5c72948f4c49e7db4f29f2521d4031f1c27f86e57b046126654083d4770268"}, +] + +[package.dependencies] +pytest = ">=7.0.0,<9" + +[package.extras] +docs = ["sphinx (>=5.3)", "sphinx-rtd-theme (>=1.0)"] +testing = ["coverage (>=6.2)", "hypothesis (>=5.7.1)"] + +[[package]] +name = "pytest-better-parametrize" +version = "0.2.0" +description = "Better description of parametrized test cases" +optional = false +python-versions = ">=3.8" +files = [ + {file = "pytest-better-parametrize-0.2.0.tar.gz", hash = "sha256:8e5216d59021a9207de8a591a8b5466ff0624f52d130f558114c7d2263f4e404"}, + {file = "pytest_better_parametrize-0.2.0-py3-none-any.whl", hash = "sha256:e51c725d9c536ca6107ed77d0b5cc843c6ed879ca15ef89ffa11d2d1c0a52b05"}, +] + +[package.dependencies] +pytest = ">=6.2.0" + +[package.extras] +dev = ["commitizen", "mike", "mkdocs", "mkdocstrings[python]", "pre-commit", "pytest-cov", "ruff"] + [[package]] name = "pytest-clarity" version = "1.0.1" @@ -1406,6 +1542,42 @@ pytest = ">=4.6" [package.extras] testing = ["fields", "hunter", "process-tests", "pytest-xdist", "virtualenv"] +[[package]] +name = "pytest-doctest-mkdocstrings" +version = "0.1.1" +description = "Run pytest --doctest-modules with markdown docstrings in code blocks (```)" +optional = false +python-versions = ">=3.7" +files = [ + {file = "pytest-doctest-mkdocstrings-0.1.1.tar.gz", hash = "sha256:a3b361e016917a79e268dc4e120a50e216e7f67527d0a53cb454392a077f003a"}, + {file = "pytest_doctest_mkdocstrings-0.1.1-py3-none-any.whl", hash = "sha256:2299264438723ad1b287a0ad6c2e0b30a99e80711381eb6e97284810237b71b2"}, +] + +[package.dependencies] +pytest = "*" + +[package.extras] +dev = ["mkdocs", "mkdocs-material", "mkdocstrings[python]", "ruff"] + +[[package]] +name = "pytest-doctestplus" +version = "1.2.1" +description = "Pytest plugin with advanced doctest features." +optional = false +python-versions = ">=3.8" +files = [ + {file = "pytest-doctestplus-1.2.1.tar.gz", hash = "sha256:2472a8a2c8cea34d2f65f6499543faeb748eecb59c597852fd98839b47307679"}, + {file = "pytest_doctestplus-1.2.1-py3-none-any.whl", hash = "sha256:103705daee8d4468eb59d444c29b0d71eb85b8f6d582295c8bc3d68ee1d88911"}, +] + +[package.dependencies] +packaging = ">=17.0" +pytest = ">=4.6" +setuptools = ">=30.3.0" + +[package.extras] +test = ["numpy", "pytest-remotedata (>=0.3.2)", "sphinx"] + [[package]] name = "pytest-env" version = "1.1.3" @@ -1424,6 +1596,38 @@ tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""} [package.extras] test = ["covdefaults (>=2.3)", "coverage (>=7.3.2)", "pytest-mock (>=3.12)"] +[[package]] +name = "pytest-markdown-docs" +version = "0.5.1" +description = "Run markdown code fences through pytest" +optional = false +python-versions = ">=3.8,<4.0" +files = [ + {file = "pytest_markdown_docs-0.5.1-py3-none-any.whl", hash = "sha256:29849ae0fccb4dce27f86ee82d942a234095804d6f6ef6157473d38a6903aab3"}, + {file = "pytest_markdown_docs-0.5.1.tar.gz", hash = "sha256:acf9b678b589779e817f740bb1c8c4984a1bdca23ddc1c68ea6377918f5a871c"}, +] + +[package.dependencies] +markdown-it-py = ">=2.2.0,<4.0" +pytest = ">=7.0.0" + +[[package]] +name = "pytest-md-report" +version = "0.5.1" +description = "A pytest plugin to make a test results report with Markdown table format." +optional = false +python-versions = ">=3.7" +files = [ + {file = "pytest-md-report-0.5.1.tar.gz", hash = "sha256:5b33eca4155caed703a9923e3ee02db5f23b601282e435b920cf98ee251d4052"}, + {file = "pytest_md_report-0.5.1-py3-none-any.whl", hash = "sha256:8daff8f77d8ff0e96e349800e4e25bd8b30f0fbfd0eb6692757a6e6949a8afde"}, +] + +[package.dependencies] +pytablewriter = ">=1.2.0,<2" +pytest = ">=3.3.2,<6.0.0 || >6.0.0,<9" +tcolorpy = ">=0.0.5,<1" +typepy = ">=1.1.1,<2" + [[package]] name = "pytest-mock" version = "3.14.0" @@ -1495,6 +1699,26 @@ files = [ pytest = ">=3.5.0" schema = ">=0.7.0" +[[package]] +name = "pytest-xdist" +version = "3.6.1" +description = "pytest xdist plugin for distributed testing, most importantly across multiple CPUs" +optional = false +python-versions = ">=3.8" +files = [ + {file = "pytest_xdist-3.6.1-py3-none-any.whl", hash = "sha256:9ed4adfb68a016610848639bb7e02c9352d5d9f03d04809919e2dafc3be4cca7"}, + {file = "pytest_xdist-3.6.1.tar.gz", hash = "sha256:ead156a4db231eec769737f57668ef58a2084a34b2e55c4a8fa20d861107300d"}, +] + +[package.dependencies] +execnet = ">=2.1" +pytest = ">=7.0.0" + +[package.extras] +psutil = ["psutil (>=3.0)"] +setproctitle = ["setproctitle"] +testing = ["filelock"] + [[package]] name = "python-dateutil" version = "2.9.0.post0" @@ -1526,6 +1750,17 @@ text-unidecode = ">=1.3" [package.extras] unidecode = ["Unidecode (>=1.1.1)"] +[[package]] +name = "pytz" +version = "2024.1" +description = "World timezone definitions, modern and historical" +optional = false +python-versions = "*" +files = [ + {file = "pytz-2024.1-py2.py3-none-any.whl", hash = "sha256:328171f4e3623139da4983451950b28e95ac706e13f3f2630a879749e7a8b319"}, + {file = "pytz-2024.1.tar.gz", hash = "sha256:2a29735ea9c18baf14b448846bde5a48030ed267578472d8955cd0e7443a9812"}, +] + [[package]] name = "pywin32" version = "306" @@ -1785,6 +2020,21 @@ files = [ {file = "schema-0.7.7.tar.gz", hash = "sha256:7da553abd2958a19dc2547c388cde53398b39196175a9be59ea1caf5ab0a1807"}, ] +[[package]] +name = "setuptools" +version = "70.3.0" +description = "Easily download, build, install, upgrade, and uninstall Python packages" +optional = false +python-versions = ">=3.8" +files = [ + {file = "setuptools-70.3.0-py3-none-any.whl", hash = "sha256:fe384da74336c398e0d956d1cae0669bc02eed936cdb1d49b57de1990dc11ffc"}, + {file = "setuptools-70.3.0.tar.gz", hash = "sha256:f171bab1dfbc86b132997f26a119f6056a57950d058587841a0082e8830f9dc5"}, +] + +[package.extras] +doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "jaraco.test", "mypy (==1.10.0)", "packaging (>=23.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy", "pytest-perf", "pytest-ruff (>=0.3.2)", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] + [[package]] name = "shellingham" version = "1.5.4" @@ -1837,6 +2087,39 @@ pure-eval = "*" [package.extras] tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"] +[[package]] +name = "tabledata" +version = "1.3.3" +description = "tabledata is a Python library to represent tabular data. Used for pytablewriter/pytablereader/SimpleSQLite/etc." +optional = false +python-versions = ">=3.7" +files = [ + {file = "tabledata-1.3.3-py3-none-any.whl", hash = "sha256:4abad1c996d8607e23b045b44dc0c5f061668f3c37585302c5f6c84c93a89962"}, + {file = "tabledata-1.3.3.tar.gz", hash = "sha256:c90daaba9a408e4397934b3ff2f6c06797d5289676420bf520c741ad43e6ff91"}, +] + +[package.dependencies] +DataProperty = ">=1.0.1,<2" +typepy = ">=1.2.0,<2" + +[package.extras] +logging = ["loguru (>=0.4.1,<1)"] +test = ["pytablewriter (>=0.46)", "pytest"] + +[[package]] +name = "tcolorpy" +version = "0.1.6" +description = "tcolopy is a Python library to apply true color for terminal text." +optional = false +python-versions = ">=3.7" +files = [ + {file = "tcolorpy-0.1.6-py3-none-any.whl", hash = "sha256:8c15cb3167f30b0a433d72297e9d68667c825bd9e2af41c8dd7dfbd3d7f7e207"}, + {file = "tcolorpy-0.1.6.tar.gz", hash = "sha256:8cea0bf5f8cf03f77528a9acfbf312df935573892ba5ea3b2516e61fa54de9a5"}, +] + +[package.extras] +test = ["pytest (>=6.0.1)", "pytest-md-report (>=0.5)"] + [[package]] name = "text-unidecode" version = "1.3" @@ -1894,6 +2177,27 @@ files = [ docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"] test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"] +[[package]] +name = "typepy" +version = "1.3.2" +description = "typepy is a Python library for variable type checker/validator/converter at a run time." +optional = false +python-versions = ">=3.7" +files = [ + {file = "typepy-1.3.2-py3-none-any.whl", hash = "sha256:d5d1022a424132622993800f1d2cd16cfdb691ac4e3b9c325f0fcb37799db1ae"}, + {file = "typepy-1.3.2.tar.gz", hash = "sha256:b69fd48b9f50cdb3809906eef36b855b3134ff66c8893a4f8580abddb0b39517"}, +] + +[package.dependencies] +mbstrdecoder = ">=1.0.0,<2" +packaging = {version = "*", optional = true, markers = "extra == \"datetime\""} +python-dateutil = {version = ">=2.8.0,<3.0.0", optional = true, markers = "extra == \"datetime\""} +pytz = {version = ">=2018.9", optional = true, markers = "extra == \"datetime\""} + +[package.extras] +datetime = ["packaging", "python-dateutil (>=2.8.0,<3.0.0)", "pytz (>=2018.9)"] +test = ["packaging", "pytest (>=6.0.1)", "python-dateutil (>=2.8.0,<3.0.0)", "pytz (>=2018.9)", "tcolorpy"] + [[package]] name = "typer" version = "0.12.3" @@ -2025,4 +2329,4 @@ test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", [metadata] lock-version = "2.0" python-versions = ">=3.8,<4.0" -content-hash = "2c1cbcc328d8f5028efafd7b8db4f9d6c107a8da40192e424f15d934d9be2646" +content-hash = "ac52bfc323893fe5cc827f27a992484015d0e2d66ad0c31da19f865798b5603b" diff --git a/pyproject.toml b/pyproject.toml index 24f3bc6..174cf1b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,12 +23,19 @@ ipykernel = "^6.20.0" ruff = "0.4.10" # testing pytest = ">=7.4.2" +pytest-asyncio = "^0.23.4" pytest-cov = ">=4.1.0" pytest-mock = ">=3.11.1" +pytest-xdist = ">=3.0.0" +pytest-better-parametrize = "^0.2.0" pytest-clarity = "^1.0.1" pytest-pretty = "^1.2.0" pytest-env = "^1.1.3" pytest-schema = "^0.1.2" +pytest-md-report = "^0.5.1" +pytest-doctestplus = "^1.2.1" +pytest-doctest-mkdocstrings = "^0.1.1" +pytest-markdown-docs = "^0.5.1" pytest-accept = "^0.1.10" pytest-mypy = "*" deepdiff = "^6.7.1" @@ -220,9 +227,9 @@ venvPath = "." venv = ".venv" [tool.codespell] -# codespell -L 'f1,llm,llms,map,mape,nmae,r2,roc' -S '.git,.venv,data,.env*,poetry*,*.log,*.csv,*.ipynb,*.html' +# codespell -L 'rejx' -S '.git,.venv,data,.env*,poetry*,*.log,*.csv,*.ipynb,*.html' skip = ".git,.venv,data,.env*,poetry*,*.log,*.csv,*.ipynb,*.html" -ignore-words-list = '' +ignore-words-list = 'rejx' quiet-level = 3 count = true diff --git a/src/rejx/__init__.py b/src/rejx/__init__.py index 52fda86..8d95cf5 100644 --- a/src/rejx/__init__.py +++ b/src/rejx/__init__.py @@ -1,4 +1,4 @@ -from .cli import ( +from rejx.cli import ( app, apply_changes, build_file_tree, @@ -18,8 +18,8 @@ "clean", "diff", "find_rej_files", - "fix_all", "fix", + "fix_all", "ls", "parse_rej_file", "process_rej_file", diff --git a/src/rejx/__main__.py b/src/rejx/__main__.py index b62d54b..ec71761 100644 --- a/src/rejx/__main__.py +++ b/src/rejx/__main__.py @@ -1,5 +1,6 @@ -"""rejx.""" -from .cli import app +"""Rejx.""" + +from rejx.cli import app if __name__ == "__main__": app() diff --git a/src/rejx/cli.py b/src/rejx/cli.py index 22b2a5f..bcba0ca 100644 --- a/src/rejx/cli.py +++ b/src/rejx/cli.py @@ -1,4 +1,5 @@ """CLI commands for rejx.""" + from __future__ import annotations import glob @@ -306,7 +307,8 @@ def build_file_tree(rej_files: list) -> Tree: ``` """ tree = Tree( - ":open_file_folder: Rejected Files Tree", guide_style="bold bright_blue", + ":open_file_folder: Rejected Files Tree", + guide_style="bold bright_blue", ) node_dict = {} @@ -372,7 +374,8 @@ def ls( @app.command() def clean( preview: bool = typer.Option( - False, help="Preview files before deleting", + False, + help="Preview files before deleting", ), ) -> None: """Deletes all .rej files in the current directory and subdirectories. diff --git a/src/rejx/exceptions.py b/src/rejx/exceptions.py index 92fbc1e..f58d4f2 100644 --- a/src/rejx/exceptions.py +++ b/src/rejx/exceptions.py @@ -1,4 +1,5 @@ """Custom exceptions raised by rejx.""" + from click import ClickException diff --git a/src/rejx/logo.py b/src/rejx/logo.py index 22640a5..60dd517 100644 --- a/src/rejx/logo.py +++ b/src/rejx/logo.py @@ -1,5 +1,6 @@ """Logo displayed when executing the rejx command.""" -from .version import __version__ + +from rejx.version import __version__ ascii_art = rf""" diff --git a/src/rejx/version.py b/src/rejx/version.py index c849514..c379cfa 100644 --- a/src/rejx/version.py +++ b/src/rejx/version.py @@ -1,4 +1,5 @@ """Return rejx version.""" + from importlib import metadata # pragma: no cover # Used to automatically set version number from github actions From cc941f4c711620dfe2fc50d280bd9d3fedd7dcf1 Mon Sep 17 00:00:00 2001 From: Markus Sagen Date: Fri, 12 Jul 2024 15:48:40 +0200 Subject: [PATCH 4/4] Update CI/CD, .pre-commit and move from Makefile to Justfile --- .github/workflows/test-and-lint.yml | 7 +--- Makefile | 53 ----------------------------- 2 files changed, 1 insertion(+), 59 deletions(-) delete mode 100644 Makefile diff --git a/.github/workflows/test-and-lint.yml b/.github/workflows/test-and-lint.yml index 743be71..3682ace 100644 --- a/.github/workflows/test-and-lint.yml +++ b/.github/workflows/test-and-lint.yml @@ -30,11 +30,6 @@ jobs: - name: Check justfile linting run: 'just --unstable --fmt --check || "justfile is not formatted!\nrun: `just fmt` and commit again"' - - name: Setup SSH agent and key - uses: webfactory/ssh-agent@v0.7.0 - with: - ssh-private-key: ${{ secrets.GH_DEPLOY_KEY_ML_UTILS }} - - name: Setup Python uses: actions/setup-python@v4 with: @@ -56,7 +51,7 @@ jobs: key: venv-${{ hashFiles('poetry.lock') }} - name: Install the project dependencies - run: just setup cicd + run: just setup ################################################################### # # diff --git a/Makefile b/Makefile deleted file mode 100644 index 174477e..0000000 --- a/Makefile +++ /dev/null @@ -1,53 +0,0 @@ -.PHONY: setup -setup: git-init - poetry env use python - poetry install - @$(MAKE) setup-pre-commit - -.PHONY: pre-commit -pre-commit: setup-pre-commit - poetry run pre-commit run --all-files - -.PHONY: install -install: - poetry install - -.PHONY: lint -lint: pre-commit - -.PHONY: test -test: - poetry run pytest -vv --disable-warnings tests/ - -.PHONY: clean -clean: - @echo 'cleaning up cached files from python ".pyc, .pyo, __pycache__/"' - find . -type f -name '*.py[co]' -delete -o -type d -name __pycache__ -delete - -deepclean: clean - @echo 'removing .venv folder' - rm -rf .venv - -.PHONY: all -all: setup clean pre-commit - -.PHONY: export -export: - # Export poetry requirement to `requirements.txt` files - poetry export -f requirements.txt --without-hashes -o requirements.txt - - # Make installable package with pip - poetry build --format dist - -################################################################ -# Setup -################################################################ - -git-init: - @if [ ! -d ".git" ]; then \ - git init > /dev/null 2>&1; \ - fi - -setup-pre-commit: - poetry run pre-commit install - poetry run pre-commit install --hook-type commit-msg