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DownloadTree.html
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<!DOCTYPE html>
<style>
.form-radio
{
-webkit-appearance: none;
-moz-appearance: none;
appearance: none;
display: inline-block;
position: relative;
background-color: #f1f1f1;
color: #666;
top: 10px;
height: 30px;
width: 30px;
border: 0;
border-radius: 50px;
cursor: pointer;
margin-right: 7px;
outline: none;
}
.form-radio:checked::before
{
position: absolute;
font: 13px/1 'Open Sans', sans-serif;
left: 11px;
top: 7px;
content: '\02143';
transform: rotate(40deg);
}
.form-radio:hover
{
background-color: #f7f7f7;
}
.form-radio:checked
{
background-color: #f1f1f1;
}
label
{
font: 15px/1.7 'Open Sans', sans-serif;
color: #333;
-webkit-font-smoothing: antialiased;
-moz-osx-font-smoothing: grayscale;
cursor: pointer;
}
line {
width: 300px;
margin-left: auto;
margin-right: auto;
height: 100px;
background-color:#2020ab;
opcaity: 0.5;
}
div.content {
width: 1100px;
margin: auto;
}
ul {
list-style-type: none;
margin: auto;
/*padding: 6px;*/
text-align: center;
padding-left: 20px;
width: 1090px;
font-size:14px;
overflow: hidden;
background-color: #007399;
}
li {
float: left;
}
li.right {
float: right;
}
li a {
display: block;
color: white;
text-align: center;
padding: 14px 16px;
text-decoration: none;
}
li a:hover {
background-color: #111;
}
header_font {
font-family: "Times New Roman", Times, serif;
font-size: 45px;
}
header_small_font {
font-family: "Times New Roman", Times, serif;
font-size: 20px;
}
.topnav-right {
padding-left: 25px;
}
.submitButton {
-moz-box-shadow:inset 0px 1px 0px 0px #99a4c9;
-webkit-box-shadow:inset 0px 1px 0px 0px #99a4c9;
box-shadow:inset 0px 1px 0px 0px #99a4c9;
background:-webkit-gradient(linear, left top, left bottom, color-stop(0.05, #4271bc), color-stop(1, #2def34));
background:-moz-linear-gradient(top, #4271bc 5%, #2def34 100%);
background:-webkit-linear-gradient(top, #4271bc 5%, #5da4e2 100%);
background:-o-linear-gradient(top, #4271bc 5%, #5da4e2 100%);
background:-ms-linear-gradient(top, #4271bc 5%, #5da4e2 100%);
background:linear-gradient(to bottom, #4271bc 5%, #5da4e2 100%);
filter:progid:DXImageTransform.Microsoft.gradient(startColorstr='#4271bc', endColorstr='#5da4e2',GradientType=0);
background-color:#4271bc;
-moz-border-radius:6px;
-webkit-border-radius:6px;
border-radius:6px;
border:1px solid #ffaa22;
display:inline-block;
cursor:pointer;
color:#333333;
font-family:Arial, sans-serif;
font-size:15px;
font-weight:bold;
padding:6px 24px;
text-decoration:none;
text-shadow:0px 1px 0px #ffee66;
}
.submitButton:hover {
background:-webkit-gradient(linear, left top, left bottom, color-stop(0.05, #5da4e2), color-stop(1, #4271bc));
background:-moz-linear-gradient(top, #5da4e2 5%, #4271bc 100%);
background:-webkit-linear-gradient(top, #5da4e2 5%, #4271bc 100%);
background:-o-linear-gradient(top, #5da4e2 5%, #4271bc 100%);
background:-ms-linear-gradient(top, #5da4e2 5%, #4271bc 100%);
background:linear-gradient(to bottom, #5da4e2 5%, #4271bc 100%);
filter:progid:DXImageTransform.Microsoft.gradient(startColorstr='#5da4e2', endColorstr='#4271bc',GradientType=0);
background-color:#5da4e2;
}
.submitButton:active {
position:relative;
top:1px;
}
</style>
<html lang="en">
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, user-scalable=yes">
<link rel="shortcut icon" href="images/shutterstock_443040703-1000x480.jpg"/>
<title>chromEvol</title>
<script src="http://code.jquery.com/jquery-1.8.2.js"></script>
<script src="/jquery-csv-master/src/jquery.csv.js"></script>
<script src='js/purl.js'></script>
<script src="/js/googleAnalytics.js"></script>
<script>
$(document).ready(function(){
$("#header").load("header.html");
//-------------------------------------------------------------
// Load file of user into Text Area of node dating section:
function readTextFile(file, callback, encoding) {
var reader = new FileReader();
reader.addEventListener('load', function (e) {
callback(this.result);
});
if (encoding) reader.readAsText(file, encoding);
else reader.readAsText(file);
}
$(function(){
$("#header").load("header.html");
});
function fileChosen(input, output) {
if (input.files && input.files[0]) {
readTextFile(
input.files[0],
function (str) {
output.value = str;
}
);
}
}
$('#TreeFile').on('change', function () {
fileChosen(this, document.getElementById('TreeFile_txt'));
});
$('#CountsFile').on('change', function () {
fileChosen(this, document.getElementById('CountsFile_txt'));
});
});
$(function () {
$("#popover5").popover({ container: 'body'});
$("#popover4").popover({ container: 'body'});
});
function eraseInputText() {
document.getElementById("inputText").value = "";
}
function eraseInputTextCounts() {
$(".inputTextCounts").text = "";
//document.getElementById("inputTextCounts").value = "";
}
function handleFileSelect(evt) {
evt.stopPropagation();
evt.preventDefault();
var files = evt.dataTransfer.files; // FileList object.
// files is a FileList of File objects. List some properties.
var output = [];
for (var i = 0, f; f = files[i]; i++) {
output.push('<li><strong>', escape(f.name), '</strong> (', f.type || 'n/a', ') - ',
f.size, ' bytes, last modified: ',
f.lastModifiedDate ? f.lastModifiedDate.toLocaleDateString() : 'n/a',
'</li>');
}
document.getElementById('list').innerHTML = '<ul>' + output.join('') + '</ul>';
}
function handleDragOver(evt) {
evt.stopPropagation();
evt.preventDefault();
evt.dataTransfer.dropEffect = 'copy'; // Explicitly show this is a copy.
}
function constructTree(){
var countsTxt = document.getElementById("CountsFile_txt").value;
if (countsTxt == "")
{
alert('Please upload counts file !!');
return false;
}
var species_list = createSpeciesList(countsTxt);
url = "http://onetwotree.tau.ac.il" + "?species_list=" + species_list
window.open(url, '_blank').focus();
}
function createSpeciesList(countsTxt) {
var lines = countsTxt.split('\n');
let txt = "";
let comma = "";
for (var i = 0; i < lines.length; i++) {
if (lines[i].charAt(0) == '>') {
txt += comma + lines[i].substring(1).replaceAll('_',' ');
comma = ","
}
}
return txt;
}
</script>
<script src="https://netdna.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js"></script>
</head>
<body>
<div class="content">
<div id="header"></div>
<div class="topnav-right">
<br><input type="text" id="JobToLoadID" value="" placeholder="Enter your results ID"/>
<a href='' id="LoadJob_button" onclick="this.href='http://chromEvol.tau.ac.il/results.html?jobId='+document.getElementById('JobToLoadID').value+'&jobTitle=check'">Load previous results</a>
</div>
<br><br>
<div class = "col-md-12 col-lg-12" style="visibility: visible">
<font face="serif" size="5" color="#4271bc">Load your Counts file:</font><a id="popover5" data-trigger="hover" class="btn btn-default transparentBorder fontSize_23px" rel="popover" data-html="true" data-content="Load your counts file in FASTA format. Taxa names will be sent automatically to OneTwoTree for an automatic tree reconstruction."><span class="glyphicon glyphicon-info-sign infoIcon"></span></a><br>
<br>
<input type="file" id="CountsFile" name="CountsFile" >
<textarea id="CountsFile_txt" name="CountsFile_txt" rows=10 cols=60></textarea>
</div>
<div class="col-md-12 col-lg-12" style="text-align:center">
<br><br><br>
<p><button type="button" class="submitButton" name="Submit" onclick="constructTree();"> Reconstruct your tree </button></p>
</div>
<a style="text-decoration:none" id="Counts_output" ></a>
<link href="bootstrap-3.0.3/dist/css/bootstrap.css" rel="stylesheet">
<link rel="stylesheet" type="text/css" media="screen and (min-aspect-ratio: 1/1)" href="http://OneTwoTree.tau.ac.il/css/onetwotree_web.css">
<link rel="stylesheet" type="text/css" media="screen and (max-aspect-ratio: 1/1)" href="http://OneTwoTree.tau.ac.il/css/onetwotree_mobile.css">
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</div>
</body>
</html>