From f5e343c192e052f709ebc2e6a38758df5929ce86 Mon Sep 17 00:00:00 2001 From: Nan Xiao <me@nanx.me> Date: Wed, 15 May 2024 10:37:26 -0400 Subject: [PATCH] Update GitHub Actions workflows --- .github/workflows/R-CMD-check.yaml | 7 ++++--- .github/workflows/pkgdown.yaml | 2 ++ .github/workflows/style.yaml | 4 ++++ .github/workflows/test-coverage.yaml | 17 ++++++++++++++--- 4 files changed, 24 insertions(+), 6 deletions(-) diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index 9107b77..0f2fe08 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -8,6 +8,8 @@ on: name: R-CMD-check +permissions: read-all + jobs: R-CMD-check: runs-on: ${{ matrix.config.os }} @@ -41,11 +43,10 @@ jobs: - uses: r-lib/actions/setup-r-dependencies@v2 with: - extra-packages: | - any::rcmdcheck - emmeans=?ignore-before-r=4.3.0 + extra-packages: any::rcmdcheck needs: check - uses: r-lib/actions/check-r-package@v2 with: upload-snapshots: true + build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index a7276e8..c9f0165 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -11,6 +11,8 @@ on: name: pkgdown +permissions: read-all + jobs: pkgdown: runs-on: ubuntu-latest diff --git a/.github/workflows/style.yaml b/.github/workflows/style.yaml index 66958a4..fd16f69 100644 --- a/.github/workflows/style.yaml +++ b/.github/workflows/style.yaml @@ -6,9 +6,13 @@ on: name: Style +permissions: read-all + jobs: style: runs-on: ubuntu-latest + permissions: + contents: write env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} steps: diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index 960234c..fefc52e 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -8,6 +8,8 @@ on: name: test-coverage +permissions: read-all + jobs: test-coverage: runs-on: ubuntu-latest @@ -23,23 +25,32 @@ jobs: - uses: r-lib/actions/setup-r-dependencies@v2 with: - extra-packages: any::covr + extra-packages: any::covr, any::xml2 needs: coverage - name: Test coverage run: | - covr::codecov( + cov <- covr::package_coverage( quiet = FALSE, clean = FALSE, install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") ) + covr::to_cobertura(cov) shell: Rscript {0} + - uses: codecov/codecov-action@v4 + with: + fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} + file: ./cobertura.xml + plugin: noop + disable_search: true + token: ${{ secrets.CODECOV_TOKEN }} + - name: Show testthat output if: always() run: | ## -------------------------------------------------------------------- - find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true + find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true shell: bash - name: Upload test results