From 60ebfe7061a2e145e2f1938606cdd85bd220372b Mon Sep 17 00:00:00 2001
From: Github Action <action@github.com>
Date: Mon, 23 Sep 2024 00:02:15 +0000
Subject: [PATCH] New data collected at 2024-09-23_00-02-15

---
 github-actions/cli/rhel.yaml              | 53 +++++++++++++++++++++++
 github-actions/knitr/R-CMD-check.yaml     |  2 -
 github-actions/knitr/knitr-examples.yaml  |  2 +-
 github-actions/mlflow/examples.yml        |  1 +
 github-actions/mlflow/master.yml          |  6 +--
 github-actions/tabulizer/R-CMD-check.yaml |  6 ++-
 gitignore/xgboost.gitignore               |  1 +
 make/knitr-Makefile                       |  6 ---
 rbuildignore/knitr.Rbuildignore           |  1 -
 9 files changed, 64 insertions(+), 14 deletions(-)
 create mode 100644 github-actions/cli/rhel.yaml

diff --git a/github-actions/cli/rhel.yaml b/github-actions/cli/rhel.yaml
new file mode 100644
index 00000000..80935e18
--- /dev/null
+++ b/github-actions/cli/rhel.yaml
@@ -0,0 +1,53 @@
+on:
+  workflow_dispatch:
+
+name: rhel.yaml
+
+permissions: read-all
+
+jobs:
+  rhel:
+    runs-on: ubuntu-latest
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          # cannot run the nodejs actions because RHEL7 cannot run node20
+          # - { os: rhel7, r: release, key: REDHAT_ACTIVATION_KEY_RHEL7 }
+          - { os: rhel8, r: release, key: REDHAT_ACTIVATION_KEY_RHEL8 }
+          - { os: rhel9, r: release, key: REDHAT_ACTIVATION_KEY_RHEL9 }
+    container:
+      image: ghcr.io/r-hub/containers/${{ matrix.config.os }}:latest
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Register
+        run: |
+          subscription-manager register \
+            --org ${{ secrets.REDHAT_ORG }} \
+            --activationkey ${{ secrets[matrix.config.key] }}
+        shell: bash
+
+      - name: Install R
+        if: ${{ matrix.config.r != 'release' }}
+        run: |
+          rig add ${{ matrix.config.r }}
+        shell: bash
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
+        env:
+          NOT_CRAN: true
+
+      - name: Unregister
+        if: always()
+        run: |
+          subscription-manager unregister || true
diff --git a/github-actions/knitr/R-CMD-check.yaml b/github-actions/knitr/R-CMD-check.yaml
index aa01d8a9..4afbaeb6 100644
--- a/github-actions/knitr/R-CMD-check.yaml
+++ b/github-actions/knitr/R-CMD-check.yaml
@@ -56,8 +56,6 @@ jobs:
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-pandoc@v2
-
       - uses: r-lib/actions/setup-tinytex@v2-branch
         env:
           # install full prebuilt version
diff --git a/github-actions/knitr/knitr-examples.yaml b/github-actions/knitr/knitr-examples.yaml
index af64600e..a7a75497 100644
--- a/github-actions/knitr/knitr-examples.yaml
+++ b/github-actions/knitr/knitr-examples.yaml
@@ -91,7 +91,7 @@ jobs:
           make integration
         shell: bash
 
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v4
         if: failure()
         with:
           name: knitr-examples
diff --git a/github-actions/mlflow/examples.yml b/github-actions/mlflow/examples.yml
index f0d5625e..80753f3c 100644
--- a/github-actions/mlflow/examples.yml
+++ b/github-actions/mlflow/examples.yml
@@ -80,6 +80,7 @@ jobs:
         if: ${{ github.event_name == 'schedule' || github.event_name == 'workflow_dispatch' || steps.check-diff.outputs.examples_changed == 'true' }}
         run: |
           source ./dev/install-common-deps.sh --ml
+          pip install fastapi uvicorn
 
       - name: Run example tests
         if: ${{ github.event_name == 'schedule' || github.event_name == 'workflow_dispatch' || steps.check-diff.outputs.examples_changed == 'true' }}
diff --git a/github-actions/mlflow/master.yml b/github-actions/mlflow/master.yml
index ce3d75f1..e581197e 100644
--- a/github-actions/mlflow/master.yml
+++ b/github-actions/mlflow/master.yml
@@ -219,7 +219,7 @@ jobs:
       - name: Install dependencies
         run: |
           source ./dev/install-common-deps.sh
-          pip install pyspark langchain langchain-community
+          pip install pyspark langchain langchain-community '.[mlserver]'
       - uses: ./.github/actions/show-versions
       - uses: ./.github/actions/pipdeptree
       - name: Run tests
@@ -245,7 +245,7 @@ jobs:
       - name: Install dependencies
         run: |
           source ./dev/install-common-deps.sh
-          pip install pyspark torch transformers langchain langchain-experimental
+          pip install pyspark torch transformers langchain langchain-experimental '.[genai]'
       - uses: ./.github/actions/show-versions
       - uses: ./.github/actions/pipdeptree
       - name: Run tests
@@ -334,7 +334,7 @@ jobs:
           source .venv/Scripts/activate
           python -m pip install -U pip
           pip install --no-dependencies tests/resources/mlflow-test-plugin
-          pip install .[extras]
+          pip install '.[extras,genai]'
           pip install pyspark
           pip install mleap
           # Install Hugging Face datasets to test Hugging Face usage with MLflow dataset tracking
diff --git a/github-actions/tabulizer/R-CMD-check.yaml b/github-actions/tabulizer/R-CMD-check.yaml
index 12863941..b07a0bb2 100644
--- a/github-actions/tabulizer/R-CMD-check.yaml
+++ b/github-actions/tabulizer/R-CMD-check.yaml
@@ -1,8 +1,12 @@
 # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
 # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
 on:
-  push:
+  push: 
+    branches:
+      - main
   pull_request:
+    branches:
+      - main
 
 name: R-CMD-check
 
diff --git a/gitignore/xgboost.gitignore b/gitignore/xgboost.gitignore
index 8a2df2a9..88996f33 100644
--- a/gitignore/xgboost.gitignore
+++ b/gitignore/xgboost.gitignore
@@ -33,6 +33,7 @@ ipch
 *.filters
 *.user
 *log
+rmm_log.txt
 Debug
 *suo
 .Rhistory
diff --git a/make/knitr-Makefile b/make/knitr-Makefile
index af3a1f1d..74067056 100644
--- a/make/knitr-Makefile
+++ b/make/knitr-Makefile
@@ -44,12 +44,6 @@ examples:
 	cd inst/examples;\
 	Rscript knit-all.R
 
-vignettes:
-	cd vignettes;\
-	lyx -e knitr knitr-refcard.lyx;\
-	sed -i '/\\usepackage{breakurl}/ d' knitr-refcard.Rnw;\
-	mv knitr-refcard.Rnw assets/template-refcard.tex
-
 clean:
 	cd ..;\
 	$(RM) -r $(PKGNAME).Rcheck/
diff --git a/rbuildignore/knitr.Rbuildignore b/rbuildignore/knitr.Rbuildignore
index 5dd1a889..213c72e2 100644
--- a/rbuildignore/knitr.Rbuildignore
+++ b/rbuildignore/knitr.Rbuildignore
@@ -23,4 +23,3 @@ Makefile
 ^codecov\.yml$
 ^NEWS\.md$
 ^cran-comments\.md$
-vignettes/knitr-refcard.lyx