The Matlab Analysis Toolbox for Spatially resolved transcriptomics aims to provide an easy to use tool for performing a initial analyis for spot-based technologies in the field of Spatially-resolved transcriptomics, with focus on In Situ Sequencing experiments. Currently it is design to be able to analyze both non-segmented and segmented datasets, following this structure:
The toolbox requires two add-ons: Image Processing Toolbox, Paralel Computing Toolbox and Bioinformatics Toolbox. The toobox as been tested in MATLAB R2019a and R2019b using Windows.
Several examples of the use of the toolbox can be found in the folder '\Examples' . Please take as a reference MATISSE_EXAMPLE_mousebrain.mlx to start your analysis.