Update deprecated env var syntax #28
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| name: Create and publish a Docker image | |
| on: | |
| push: | |
| branches: ['main'] | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: ${{ github.repository }} | |
| jobs: | |
| build-and-push-image: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - path: ./dockerfiles/guppy-gpu | |
| image: ghcr.io/monashbioinformaticsplatform/containers/guppy-gpu | |
| version: 6.3.8 | |
| force: false | |
| - path: ./dockerfiles/masurca | |
| image: ghcr.io/monashbioinformaticsplatform/containers/masurca | |
| version: 4.1.0 | |
| force: false | |
| - path: ./dockerfiles/superfreq | |
| image: ghcr.io/monashbioinformaticsplatform/containers/superfreq | |
| version: 1.4.5 | |
| force: false | |
| - path: ./dockerfiles/fromassembly2feature | |
| image: ghcr.io/monashbioinformaticsplatform/containers/fromassembly2feature | |
| version: 2.22-a1805f6 | |
| force: false | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Log in to the Container registry | |
| uses: docker/login-action@f054a8b539a109f9f41c372932f1ae047eff08c9 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker | |
| id: meta | |
| uses: docker/metadata-action@98669ae865ea3cffbcbaa878cf57c20bbf1c6c38 | |
| with: | |
| images: ${{ matrix.image }} | |
| labels: | | |
| org.opencontainers.image.source=https://github.com/monashbioinformaticsplatform/containers | |
| - name: Get current date | |
| id: datestamp | |
| run: | | |
| echo "datestamp=$(date '+%F.%H%M%S')" >>$GITHUB_ENV | |
| - name: Check if image exists in registry | |
| id: check_image | |
| run: | | |
| IMAGE_TAG="${{ matrix.image }}:${{ matrix.version }}" | |
| if docker manifest inspect ${IMAGE_TAG} > /dev/null 2>&1; then | |
| echo "VERSION_EXISTS=true" >> $GITHUB_ENV | |
| else | |
| echo "VERSION_EXISTS=false" >> $GITHUB_ENV | |
| fi | |
| - name: Build and push Docker image | |
| #uses: docker/build-push-action@ad44023a93711e3deb337508980b4b5e9bcdc5dc | |
| uses: docker/build-push-action@v3 | |
| if: ${{ env.VERSION_EXISTS == 'false' || matrix.force }} | |
| with: | |
| push: true | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| context: ${{ matrix.path }}/${{ matrix.version }} | |
| tags: | | |
| ${{ matrix.image }}:${{ matrix.version }} | |
| ${{ matrix.image }}:${{ matrix.version }}-${{ github.run_number }} | |
| ${{ matrix.image }}:${{ matrix.version }}-${{ env.datestamp }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| file: ${{ matrix.path }}/${{ matrix.version }}/Dockerfile |