From 248d623186b12959e141f7b0039019356517710a Mon Sep 17 00:00:00 2001 From: verku Date: Tue, 18 Jun 2024 14:50:04 +0200 Subject: [PATCH] Relaxed depth filters to get more SNPs for test runs --- .test/config/config_pca_roh.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.test/config/config_pca_roh.yaml b/.test/config/config_pca_roh.yaml index fc66955..71936cb 100644 --- a/.test/config/config_pca_roh.yaml +++ b/.test/config/config_pca_roh.yaml @@ -153,13 +153,13 @@ zerocoverage: False # to set a minimum depth threshold. For ultra low coverage samples, a # minimum hard threshold of 3X is applied that overrides this parameter. # A minimum depth of 6X should be aimed for. -minDP: 0.33 +minDP: 0.1 # Maximum depth threshold calculation per sample. # Will be applied to mlRho analysis and in VCF file filtering. # Factor by which the average genome-wide depth should be multiplied # to set a maximum depth threshold. -maxDP: 10 +maxDP: 100 #####