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modules.json
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{
"name": "nf-core/ameta",
"homePage": "https://github.com/nf-core/ameta",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bowtie2/align": {
"branch": "master",
"git_sha": "0fe30831abbc2ed115e46e92330edf38f56edc3d",
"installed_by": ["fastq_align_bowtie2", "modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
"installed_by": ["modules"]
},
"cutadapt": {
"branch": "master",
"git_sha": "6618151ed69274863dc6fe6d2920afa90abaca1f",
"installed_by": ["modules"],
"patch": "modules/nf-core/cutadapt/cutadapt.diff"
},
"fastqc": {
"branch": "master",
"git_sha": "285a50500f9e02578d90b3ce6382ea3c30216acd",
"installed_by": ["modules"]
},
"krakenuniq/build": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"krakenuniq/preloadedkrakenuniq": {
"branch": "master",
"git_sha": "9de9365c3ca6071ec01705919f6667c718ef47b4",
"installed_by": ["modules"]
},
"krona/ktimporttaxonomy": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"krona/ktupdatetaxonomy": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"malt/build": {
"branch": "master",
"git_sha": "7d3bac628092d1aead36960c4b6ae41302a9f797",
"installed_by": ["modules"],
"patch": "modules/nf-core/malt/build/malt-build.diff"
},
"malt/run": {
"branch": "master",
"git_sha": "7d3bac628092d1aead36960c4b6ae41302a9f797",
"installed_by": ["modules"],
"patch": "modules/nf-core/malt/run/malt-run.diff"
},
"maltextract": {
"branch": "master",
"git_sha": "8840ece9ee7528480dec95796e017be02ada0dc0",
"installed_by": ["modules"],
"patch": "modules/nf-core/maltextract/maltextract.diff"
},
"mapdamage2": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"installed_by": ["modules"],
"patch": "modules/nf-core/multiqc/multiqc.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "f153f1f10e1083c49935565844cccb7453021682",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/view": {
"branch": "master",
"git_sha": "0bd7d2333a88483aa0476acea172e9f5f6dd83bb",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["fastq_align_bowtie2"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools"]
},
"fastq_align_bowtie2": {
"branch": "master",
"git_sha": "55e7bb6d5279ec21f254bbab0943117cb3d2fc35",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}