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home_program.qmd
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---
title: "Program"
pagetitle: "RaukR 2025 • Program"
date: ""
sidebar: false
format:
html:
number-sections: false
---
## Guest instructors
::: {.guest-parent}
::: {.guest-child}
{.nolightbox}
[Jennifer Bryan](https://jennybryan.org/)
Software engineer at Posit
Data science professor
[University of British Columbia](https://www.stat.ubc.ca/jenny-bryan)
Vancouver, Canada
:::
::: {.guest-child}
{.nolightbox}
[Christophe Dervieux](https://github.com/cderv)[To be confirmed]{.badge}
Software engineer at Posit
Paris, France
:::
::: {.guest-child}
{.nolightbox}
[Henrik Bengtsson](https://www.linkedin.com/in/henrikbengtsson/)[To be confirmed]{.badge}
Project lead for [Futureverse](https://www.futureverse.org/)
Associate professor in Epidemiology & Biostatistics
[University of California](https://profiles.ucsf.edu/henrik.bengtsson)
San Francisco, USA
:::
:::
## Syllabus
We will be covering a number of topics in R programming with focus on R features helpful in bioinformatics and computational biology data analyses workflow:
- Reproducible research in R (Quarto, Rmarkdown, Renv)
- Collaborative work using Git and GitHub
- R code style guide & best practices
- Code debugging, optimization and profiling
- Parallelization and vectorization in R
- Crafting your own functions
- Object oriented programming and R classes: S3, S4, R6 and RC
- Anatomy of an R package: Creating your own package from scratch
- Tidy data flow using tidyverse
- Using the language of graphics: ggplot2
- Developing web applications using Shiny
- R and Python integration using reticulate
- Team project work - developing data analyses workflow in R using acquired skills
## Course materials
Course materials will be made available at the beginning of the workshop and will remain open and publicly accessible online for at least a year. You can check out the materials from [2024](https://nbisweden.github.io/raukr-2024/contents.html).
## Sessions
Our daily schedule begins with a morning session from 09:00 to 12:30, starting with breakfast from 08:30 to 09:00. There will be a 30-minute break at 10:30. Lunch is scheduled for 12:30 to 13:30, followed by the afternoon session from 13:30 to 17:00, which includes another 30-minute break at 15:00.
Please be aware that online guest lectures may take place after 17:00 due to differing time zones.
During most sessions, our instructors and teaching assistants will be available to support you with practical exercises and to answer any questions you may have.