docker-compose.yml

---
version: "3.4"
services:
    database:
        restart: always
        image: postgres:12
        container_name: herdbook-db
        env_file:
            - ./.docker/database-variables.env
        environment:
            - POSTGRES_HOST_AUTH_METHOD=trust
        volumes:
            - ./postgres-data:/var/lib/postgresql/data
    herdbook-frontend:
        image: herdbook_frontend
        container_name: herdbook_frontend
        build:
            context: ./
            dockerfile: .docker/frontend
            cache_from:
              - ghcr.io/nbisweden/herdbook_frontend
        command: bash -c "rm -rf /home/node/app/node_modules/* && npm run start"
        volumes:
            - ./frontend:/home/node/app/
            - exclude:/home/node/app/node_modules
        environment:
            - NODE_OPTIONS="--max-old-space-size=2048"
    main:
        image: herdbook_main
        build:
            context: ./
            dockerfile: .docker/main
            cache_from:
              - ghcr.io/nbisweden/herdbook_main
        container_name: herdbook-main
        env_file:
            - ./.docker/database-variables.env
            - ./.docker/r-api-variables.env
            - ./.docker/main-api-variables.env
        ports:
            - 8080:8080
            - 8443:8443
        volumes:
            - type: bind
              source: ./app
              target: /api_src
            - type: bind
              source: ./config
              target: /config
            - type: bind
              source: ./logs
              target: /logs
        depends_on:
            - database
            - herdbook-frontend
    r-api:
        container_name: r-api
        build:
            context: ./
            dockerfile: .docker/r-api
            cache_from:
              - ghcr.io/nbisweden/herdbook_r-api
        env_file:
            - ./.docker/database-variables.env
            - ./.docker/r-api-variables.env
        image: herdbook_r-api
        volumes:
            - type: bind
              source: ./R
              target: /code
    s3backend:
        command: -c 'echo s3user:x:$$(stat -c %u /data):0:s3 user:/:/bin/sh >> /etc/passwd && su s3user -c "mkdir -p /data/$${S3_BUCKET} && minio server /data"'
        entrypoint: /bin/sh
        container_name: s3backend
        environment:
            - MINIO_ACCESS_KEY=accesskeytest
            - MINIO_SECRET_KEY=secretkeytest
        env_file:
            - ./.docker/main-api-variables.env
        volumes:
            - ./s3data:/data
        healthcheck:
            test: ["CMD", "curl", "-fkq", "http://localhost:9000/minio/health/live"]
            interval: 5s
            timeout: 20s
            retries: 3
        image: minio/minio:RELEASE.2021-04-18T19-26-29Z

volumes:
  exclude: null