R-CMD-check.yaml

on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}
    if: "! contains(toJSON(github.event.commits.*.message), '[skip-check]')"

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
          - {os: ubuntu-latest,  r: 'release'}
          - {os: ubuntu-latest,  r: 'oldrel-1'}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes


    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true



      # - name: Query dependencies
      #   run: |
      #     install.packages('remotes')
      #     saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
      #     writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
      #   shell: Rscript {0}
      #
      # - name: Cache R packages
      #   if: runner.os != 'Windows'
      #   uses: actions/cache@v1
      #   with:
      #     path: ${{ env.R_LIBS_USER }}
      #     key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
      #     restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install JAGS macOS
        if: runner.os == 'macOS'
        run: |
          rm '/usr/local/bin/gfortran'
          brew install jags

      - name: Download JAGS Windows
        if: runner.os == 'Windows'
        run: (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
        shell: powershell

      - name: Install JAGS Windows
        if: runner.os == 'Windows'
        run: C:\JAGS-4.3.1.exe /S
        shell: cmd

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')


      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::rcmdcheck
          needs: check

      - uses: r-lib/actions/check-r-package@v2
        with:
          upload-snapshots: true

      # - name: Install dependencies
      #   run: |
      #     remotes::install_deps(dependencies = TRUE)
      #     remotes::install_cran("rcmdcheck")
      #   shell: Rscript {0}

      # - name: Session info
      #   run: |
      #     options(width = 100)
      #     pkgs <- installed.packages()[, "Package"]
      #     sessioninfo::session_info(pkgs, include_base = TRUE)
      #   shell: Rscript {0}

      # - name: Check
      #   env:
      #     _R_CHECK_CRAN_INCOMING_: false
      #     _R_CHECK_FORCE_SUGGESTS_: false
      #     _R_CHECK_SYSTEM_CLOCK_: false
      #     IS_CHECK: true
      #   run: |
      #     os = .Platform$OS.type
      #     if (os == "windows" & R.version$major == 3) {remotes::install_version("rjags", version = "4-10")}
      #     jagshome = if (os == "windows") {readRegistry("SOFTWARE\\JAGS", maxdepth = 2, view = "32-bit")}
      #     if (os == "windows"){Sys.setenv(JAGS_HOME = try(jagshome[["JAGS-4.3.0"]][["InstallDir"]]))}
      #     rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), build_args = "--no-manual", error_on = "warning", check_dir = "check")
      #   shell: Rscript {0}

      # - name: Show testthat output
      #   if: always()
      #   run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
      #   shell: bash
      #
      # - name: Upload check results
      #   if: failure()
      #   uses: actions/upload-artifact@main
      #   with:
      #     name: ${{ runner.os }}-r${{ matrix.config.r }}-results
      #     path: check