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pyproject.toml
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[build-system]
requires = ["poetry>=1.0.5"]
build-backend = "poetry.masonry.api"
[tool.poetry]
name = "stjudecloud-oliver"
version = "1.4.2"
description = "An opinionated Cromwell orchestration system"
license = "MIT"
authors = [
"Clay Mcleod <[email protected]>",
"Jobin Sunny <[email protected]>",
"Andrew Thrasher <[email protected]>",
"Andrew Frantz <[email protected]"
]
readme = "README.md"
homepage = "https://stjudecloud.github.io/oliver/"
repository = "https://github.com/stjudecloud/oliver"
documentation = "https://stjudecloud.github.io/oliver/"
keywords = [
"bioinformatics",
"genomics",
"workflows",
"cromwell"
]
classifiers = [
"Programming Language :: Python :: 3",
"Operating System :: OS Independent",
"Development Status :: 5 - Production/Stable",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
packages = [
{ include = "oliver" }
]
include = [
"*.txt",
"*.md"
]
[tool.poetry.scripts]
oliver = "oliver.__main__:main"
[tool.poetry.dependencies]
python = ">=3.6 <3.8"
aiohttp = "^3.6.2"
azure-cosmos = "^3.1.2"
boto3 = "^1.11.9"
logzero = "^1.5.0"
pendulum = "^2.0.5"
requests = "^2.22.0"
tabulate = "^0.8.6"
tzlocal = "^2.0.0"
mypy_boto3_batch = "^1.12.21"
mypy_boto3_logs = "^1.12.21"
black = "^20.8b1"
[tool.poetry.dev-dependencies]
mkdocs = "1.0.4"
mkdocs-bootswatch = "1.0"
pylint = "^2.4.4"
pytest = "^5.3.5"
pytest-asyncio = "^0.10.0"
pytest-cov = "^2.8.1"
python-semantic-release = ">=6.0.0"
wheel = "^0.34.0"
mypy = "^0.761"
mypy-boto3 = {extras = ["batch", "logs"], version = "^1.12.17"}
boto3-stubs = "^1.12.17"
pydocstyle = "^5.1.1"
rope = "^0.18.0"
[tool.semantic_release]
version_variable = "pyproject.toml:version"
version_source = "commit"
commit_subject = "chore: bumping version to v{version}"
commit_message = ""
commit_author = "St. Jude Cloud <[email protected]>"
build_command = "poetry build"
upload_to_release = "false"
# check_build_status = true
[tool.black]
target-version = ['py36', 'py37', 'py38']
include = '\.pyi?$'
exclude = '''
/(
\.eggs
| \.git
| \.hg
| \.mypy_cache
| \.tox
| \.venv
| _build
| buck-out
| build
| dist
| __pycache__
| .*egg-info
)/
'''