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Publications.html
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<h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-listing-category category-default"><div class="category" data-category="">All <span class="quarto-category-count">(23)</span></div><div class="category" data-category="air pollution">air pollution <span class="quarto-category-count">(10)</span></div><div class="category" data-category="bayesian">bayesian <span class="quarto-category-count">(2)</span></div><div class="category" data-category="climate">climate <span class="quarto-category-count">(1)</span></div><div class="category" data-category="environmental justice">environmental justice <span class="quarto-category-count">(2)</span></div><div class="category" data-category="epidemiology">epidemiology <span class="quarto-category-count">(13)</span></div><div class="category" data-category="exposomics">exposomics <span class="quarto-category-count">(2)</span></div><div class="category" data-category="exposure">exposure <span class="quarto-category-count">(3)</span></div><div class="category" data-category="gaussian processes">gaussian processes <span class="quarto-category-count">(2)</span></div><div class="category" data-category="gene-environment interactions">gene-environment interactions <span class="quarto-category-count">(1)</span></div><div class="category" data-category="genetics">genetics <span class="quarto-category-count">(1)</span></div><div class="category" data-category="geospatial">geospatial <span class="quarto-category-count">(17)</span></div><div class="category" data-category="geotox">geotox <span class="quarto-category-count">(1)</span></div><div class="category" data-category="groundwater">groundwater <span class="quarto-category-count">(2)</span></div><div class="category" data-category="mixtures">mixtures <span class="quarto-category-count">(4)</span></div><div class="category" data-category="mycobacteria">mycobacteria <span class="quarto-category-count">(3)</span></div><div class="category" data-category="precision environmental health">precision environmental health <span class="quarto-category-count">(1)</span></div><div class="category" data-category="radon">radon <span class="quarto-category-count">(1)</span></div><div class="category" data-category="surface water">surface water <span class="quarto-category-count">(2)</span></div><div class="category" data-category="toxicology">toxicology <span class="quarto-category-count">(2)</span></div></div></div>
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<li data-index="0" data-categories="geospatial,exposure,exposomics,epidemiology" data-listing-file-modified-sort="1726451476158" data-listing-reading-time-sort="1" data-listing-word-count-sort="154">
<span class="listing-title lead">A review of geospatial exposure models and approaches for health data integration</span><br>
<span class="listing-author">Lara P Clark, Daniel Zilber, Charles Schmitt, David C Fargo, David M Reif, Alison A Motsinger-Reif, Kyle P Messier</span><br>
<span class="listing-publication fst-italic ">Journal of Exposure Science and Environmental Epidemiology</span>
<span class="listing-year">(2024)</span><br>
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<a href="https://www.nature.com/articles/s41370-024-00712-8" class="btn btn-secondary" target="_blank" rel="noopener noreferrer">
DOI
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<li data-index="1" data-categories="mixtures,epidemiology,bayesian,climate,environmental justice" data-listing-file-modified-sort="1726451592202" data-listing-reading-time-sort="1" data-listing-word-count-sort="200">
<span class="listing-title lead">Associations between Flood Risk and United States Census Tract-Level Health Outcomes</span><br>
<span class="listing-author">Alvin Sheng, Brian J Reich, & Kyle P Messier</span><br>
<span class="listing-publication fst-italic ">American Journal of Epidemiology</span>
<span class="listing-year">(2024)</span><br>
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<a href="https://doi.org/10.1093/aje/kwae093" class="btn btn-secondary" target="_blank" rel="noopener noreferrer">
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<li data-index="2" data-categories="gene-environment interactions,precision environmental health,epidemiology,genetics" data-listing-file-modified-sort="1719509678094" data-listing-reading-time-sort="1" data-listing-word-count-sort="148">
<span class="listing-title lead">Gene-environment interactions within a precision environmental health framework</span><br>
<span class="listing-author">Alison A. Motsinger-Reif, David M. Reif, Farida S. Akhtari, John S. House, C. Ryan Campbell, Kyle P. Messier, David C. Fargo, Tiffany A. Bowen, Srikanth S. Nadadur, Charles P. Schmitt, Kristianna G. Pettibone, David M. Balshaw, Cindy P. Lawler, Shelia A. Newton, Gwen W. Collman, Aubrey K. Miller, B. Alex Merrick, Yuxia Cui, Benedict Anchang, Quaker E. Harmon, Kimberly A. McAllister, Rick Woychik</span><br>
<span class="listing-publication fst-italic ">Cell Genomics</span>
<span class="listing-year">(2024)</span><br>
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<span class="listing-author">Daniel Zilber & Kyle P Messier</span><br>
<span class="listing-publication fst-italic ">PLOS One</span>
<span class="listing-year">(2024)</span><br>
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<span class="listing-publication fst-italic ">Science of the Total Environment</span>
<span class="listing-year">(2023)</span><br>
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<span class="listing-publication fst-italic ">Toxics</span>
<span class="listing-year">(2023)</span><br>
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<span class="listing-publication fst-italic ">Journal of Exposure Science & Environmental Epidemiology</span>
<span class="listing-year">(2023)</span><br>
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<span class="listing-year">(2023)</span><br>
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<a href="https://doi.org/10.1097/EE9.0000000000000220" class="btn btn-secondary" target="_blank" rel="noopener noreferrer">
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<span class="listing-title lead">Ambient air pollution exposure assessments in fertility studies: A systematic review and guide for reproductive epidemiologists</span><br>
<span class="listing-author">Johanna R Jahnke, Kyle P Messier, Melissa Lowe, Anne Marie Jukic</span><br>
<span class="listing-publication fst-italic ">Current Epidemiology Reports</span>
<span class="listing-year">(2022)</span><br>
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<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9229606" class="btn btn-info" target="_blank" rel="noopener noreferrer">
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<span class="listing-title lead">Environmental risk factors associated with pulmonary isolation of nontuberculous mycobacteria, a population-based study in the southeastern United States</span><br>
<span class="listing-author">Stephanie DeFlorio-Barker, Andrey Egorov, Genee S. Smith, Mark S. Murphy, Jason E. Stout, Andrew J. Ghio, Edward E. Hudgens, Kyle P. Messier, Jean-Marie Maillard, and Elizabeth D. Hilborn</span><br>
<span class="listing-publication fst-italic ">Science of The Total Environment</span>
<span class="listing-year">(2021)</span><br>
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<span class="listing-title lead">Local- and regional-scale racial and ethnic disparities in air pollution determined by long-term mobile monitoring</span><br>
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<span class="listing-publication fst-italic ">Proceedings of the National Academy of Sciences</span>
<span class="listing-year">(2021)</span><br>
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<span class="listing-title lead">Scalable penalized spatiotemporal land-use regression for ground-level nitrogen dioxide</span><br>
<span class="listing-author">Kyle P Messier & Matthias Katzfuss</span><br>
<span class="listing-publication fst-italic ">Annals of Applied Statistics</span>
<span class="listing-year">(2021)</span><br>
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<span class="listing-title lead">Comparison of Mobile and Fixed-Site Black Carbon Measurements for High- Resolution Urban Pollution Mapping</span><br>
<span class="listing-author">Sarah E. Chambliss, Chelsea V. Preble, Julien J. Caubel, Troy Cados, Kyle P. Messier, Ramón A. Alvarez, Brian LaFranchi, Melissa Lunden, Julian D. Marshall, Adam A. Szpiro, Thomas W. Kirchstetter and Joshua S. Apte</span><br>
<span class="listing-publication fst-italic ">Environmental Science & Technology</span>
<span class="listing-year">(2020)</span><br>
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<li data-index="13" data-categories="geospatial,air pollution,gaussian processes" data-listing-file-modified-sort="1713098952698" data-listing-reading-time-sort="2" data-listing-word-count-sort="243">
<span class="listing-title lead">Fine-scale spatiotemporal air pollution analysis using mobile monitors on Google Street View vehicles</span><br>
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<span class="listing-publication fst-italic ">Journal of the American Statistical Association: Applications and Case Studies</span>
<span class="listing-year">(2020)</span><br>
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<span class="listing-title lead">Application of diagnostic criteria for non- tuberculous mycobacterial disease to a case series of mycobacterial-positive isolates</span><br>
<span class="listing-author">Andrew J. Ghio, Genee S. Smith, Stephanie DeFlorio-Barker, Kyle P. Messier, Edward Hudgens, Mark S. Murphy, Jean-Marie Maillard, Jason E. Stout, Elizabeth D. Hilborn</span><br>
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<span class="listing-year">(2019)</span><br>
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<span class="listing-title lead">Modeling groundwater nitrate exposure in private wells of North Carolina for the Agricultural Health Study</span><br>
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<span class="listing-publication fst-italic ">Science of the Total Environment</span>
<span class="listing-year">(2019)</span><br>
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<span class="listing-title lead">Geostatistical Prediction of Microbial Water Quality Throughout a Stream Network Using Meteorology, Land Cover, and Spatiotemporal Autocorrelation</span><br>
<span class="listing-author">David A. Holcomb, Kyle P. Messier, Marc L. Serre, Jakob G. Rowny, and Jill R. Stewart</span><br>
<span class="listing-publication fst-italic ">Environmental Science & Technology</span>
<span class="listing-year">(2018)</span><br>
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<li data-index="17" data-categories="epidemiology,air pollution,geospatial" data-listing-file-modified-sort="1713115303027" data-listing-reading-time-sort="2" data-listing-word-count-sort="371">
<span class="listing-title lead">Long-Term Exposure to Ultrafine Particles and Incidence of Cardiovascular and Cerebrovascular Disease in a Prospective Study of a Dutch Cohort</span><br>
<span class="listing-author">George S. Downward, Erik J.H.M. van Nunen, Jules Kerckhoffs, Paolo Vineis, Bert Brunekreef, Jolanda M.A. Boer, Kyle P. Messier, Ananya Roy, W. Monique M. Verschuren, Yvonne T. van der Schouw, Ivonne Sluijs, John Gulliver, Gerard Hoek, and Roel Vermeulen</span><br>
<span class="listing-publication fst-italic ">Environmental Health Perspectives</span>
<span class="listing-year">(2018)</span><br>
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<span class="listing-title lead">Mapping Air Pollution with Google Street View Cars: Efficient Approaches with Mobile Monitoring and Land Use Regression</span><br>
<span class="listing-author">Kyle P. Messier, Sarah E. Chambliss, Shahzad Gani, Ramon Alvarez, Michael Brauer, Jonathan J. Choi, Steven P. Hamburg, Jules Kerckhoffs, Brian LaFranchi, Melissa M. Lunden, Julian D. Marshall, Christopher J. Portier, Ananya Roy, Adam A. Szpiro, Roel C. H. Vermeulen and Joshua S. Apte</span><br>
<span class="listing-publication fst-italic ">Environmental Science & Technology</span>
<span class="listing-year">(2018)</span><br>
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<li data-index="19" data-categories="epidemiology,surface water,geospatial" data-listing-file-modified-sort="1713121143693" data-listing-reading-time-sort="2" data-listing-word-count-sort="323">
<span class="listing-title lead">Extreme precipitation and emergency room visits for influenza in Massachusetts: a case- crossover analysis</span><br>
<span class="listing-author">Genee S. Smith, Kyle P. Messier, James L. Crooks, Timothy J. Wade, Cynthia J. Lin, & Elizabeth D. Hilborn</span><br>
<span class="listing-publication fst-italic ">Environmental Health</span>
<span class="listing-year">(2017)</span><br>
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<span class="listing-title lead">High-Resolution Air Pollution Mapping with Google Street View Cars: Exploiting Big Data</span><br>
<span class="listing-author">Joshua S. Apte, Kyle P. Messier, Shahzad Gani, Michael Brauer, Thomas W. Kirchstetter, Melissa M. Lunden, Julian D. Marshall, Christopher J. Portier, Roel C.H. Vermeulen and Steven P. Hamburg</span><br>
<span class="listing-publication fst-italic ">Environmental Science & Technology</span>
<span class="listing-year">(2017)</span><br>
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<a href="https://doi.org/10.1021/acs.est.7b00891" class="btn btn-secondary" target="_blank" rel="noopener noreferrer">
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<li data-index="21" data-categories="radon,groundwater,epidemiology,geospatial" data-listing-file-modified-sort="1713556891034" data-listing-reading-time-sort="2" data-listing-word-count-sort="287">
<span class="listing-title lead">Lung and stomach cancer associations with groundwater radon in North Carolina, USA</span><br>
<span class="listing-author">Kyle P Messier & Marc L Serre</span><br>
<span class="listing-publication fst-italic ">International Journal of Epidemiology</span>
<span class="listing-year">(2017)</span><br>
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<a href="https://doi.org/10.1093/ije/dyw128" class="btn btn-secondary" target="_blank" rel="noopener noreferrer">
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<span class="listing-title lead">Comparison of Ultrafine Particle and Black Carbon Concentration Predictions from a Mobile and Short-Term Stationary Land-Use Regression Model</span><br>
<span class="listing-author">Jules Kerckhoffs, Gerard Hoek, Kyle P. Messier, Bert Brunekreef, Kees Meliefste, Jochem O. Klompmaker and Roel Vermeulen</span><br>
<span class="listing-publication fst-italic ">Environmental Science & Technology</span>
<span class="listing-year">(2016)</span><br>
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config.onUntrigger = onUntriggerFn;
}
window.tippy(el, config);
}
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
for (var i=0; i<noterefs.length; i++) {
const ref = noterefs[i];
tippyHover(ref, function() {
// use id or data attribute instead here
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
return note.innerHTML;
});
}
const xrefs = window.document.querySelectorAll('a.quarto-xref');
const processXRef = (id, note) => {
// Strip column container classes
const stripColumnClz = (el) => {
el.classList.remove("page-full", "page-columns");
if (el.children) {
for (const child of el.children) {
stripColumnClz(child);
}
}
}
stripColumnClz(note)
if (id === null || id.startsWith('sec-')) {
// Special case sections, only their first couple elements
const container = document.createElement("div");
if (note.children && note.children.length > 2) {
container.appendChild(note.children[0].cloneNode(true));
for (let i = 1; i < note.children.length; i++) {
const child = note.children[i];
if (child.tagName === "P" && child.innerText === "") {
continue;
} else {
container.appendChild(child.cloneNode(true));
break;
}
}
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(container);
}
return container.innerHTML
} else {
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
return note.innerHTML;
}
} else {
// Remove any anchor links if they are present
const anchorLink = note.querySelector('a.anchorjs-link');
if (anchorLink) {
anchorLink.remove();
}
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
// TODO in 1.5, we should make sure this works without a callout special case
if (note.classList.contains("callout")) {
return note.outerHTML;
} else {
return note.innerHTML;
}
}
}
for (var i=0; i<xrefs.length; i++) {
const xref = xrefs[i];
tippyHover(xref, undefined, function(instance) {
instance.disable();
let url = xref.getAttribute('href');
let hash = undefined;
if (url.startsWith('#')) {
hash = url;
} else {
try { hash = new URL(url).hash; } catch {}
}
if (hash) {
const id = hash.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note !== null) {
try {
const html = processXRef(id, note.cloneNode(true));
instance.setContent(html);
} finally {
instance.enable();
instance.show();
}
} else {
// See if we can fetch this
fetch(url.split('#')[0])
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.getElementById(id);
if (note !== null) {
const html = processXRef(id, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
} else {
// See if we can fetch a full url (with no hash to target)
// This is a special case and we should probably do some content thinning / targeting
fetch(url)
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.querySelector('main.content');
if (note !== null) {
// This should only happen for chapter cross references
// (since there is no id in the URL)
// remove the first header
if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
note.children[0].remove();
}
const html = processXRef(null, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
}, function(instance) {
});
}
let selectedAnnoteEl;
const selectorForAnnotation = ( cell, annotation) => {
let cellAttr = 'data-code-cell="' + cell + '"';
let lineAttr = 'data-code-annotation="' + annotation + '"';
const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
return selector;
}
const selectCodeLines = (annoteEl) => {
const doc = window.document;
const targetCell = annoteEl.getAttribute("data-target-cell");
const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
const lines = annoteSpan.getAttribute("data-code-lines").split(",");
const lineIds = lines.map((line) => {
return targetCell + "-" + line;
})
let top = null;
let height = null;
let parent = null;
if (lineIds.length > 0) {