DESCRIPTION

Package: iTOP
Type: Package
Title: Inferring the Topology of Omics Data
Version: 1.0.2
Author: Nanne Aben
Maintainer: Nanne Aben <nanne.aben@gmail.com>
Description: Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).
Imports: Matrix,
    corpcor
License: GPL-2
Encoding: UTF-8
LazyData: true
Suggests: knitr,
    rmarkdown, 
    NMF,
    pcalg,
    Rgraphviz
VignetteBuilder: knitr
RoxygenNote: 6.0.1