From f108382f0bc7a108b724cda5f3bf750aac73ad0f Mon Sep 17 00:00:00 2001
From: Nicholas Esposito <esposito@Orion-login-2.HPC.MsState.Edu>
Date: Mon, 13 Nov 2023 13:49:03 -0500
Subject: [PATCH] rm run_bufr2ioda_conventional_prepbufr_ps.sh

---
 .../run_bufr2ioda_conventional_prepbufr_ps.sh | 82 -------------------
 1 file changed, 82 deletions(-)
 delete mode 100755 ush/ioda/bufr2ioda/run_bufr2ioda_conventional_prepbufr_ps.sh

diff --git a/ush/ioda/bufr2ioda/run_bufr2ioda_conventional_prepbufr_ps.sh b/ush/ioda/bufr2ioda/run_bufr2ioda_conventional_prepbufr_ps.sh
deleted file mode 100755
index 14757abe8..000000000
--- a/ush/ioda/bufr2ioda/run_bufr2ioda_conventional_prepbufr_ps.sh
+++ /dev/null
@@ -1,82 +0,0 @@
-#!/bin/bash
-#--------------------------------------------------------------------------------------
-# run_bufr2ioda.sh
-# This driver script will:
-# - generate config files from templates for each BUFR file
-# - use bufr2ioda python scripts or executable and produce output IODA files
-# usage:
-#       run_bufr2ioda.sh YYYYMMDDHH $DMPDIR /path/to/templates $COM_OBS
-#
-#--------------------------------------------------------------------------------------
-if [[ $# -ne 5 ]] ; then
-    echo "usage:"
-    echo "      $0 YYYYMMDDHH gdas|gfs /path/to/files.bufr_d/ /path/to/templates /path/to/output.ioda/"
-    exit 1
-fi
-
-# some of these need exported to be picked up by the python script below
-# input parameters
-CDATE=${CDATE:-$1}
-export RUN=${RUN:-$2}
-export DMPDIR=${DMPDIR:-$3}
-config_template_dir=${config_template_dir:-$4}
-export COM_OBS=${COM_OBS:-$5}
-
-# derived parameters
-export PDY=$(echo $CDATE | cut -c1-8)
-export cyc=$(echo $CDATE | cut -c9-10)
-
-# get gdasapp root directory
-readonly DIR_ROOT=$(cd "$(dirname "$(readlink -f -n "${BASH_SOURCE[0]}" )" )/../../.." && pwd -P)
-BUFR2IODA=$DIR_ROOT/build/bin/bufr2ioda.x
-USH_IODA=$DIR_ROOT/ush/ioda/bufr2ioda
-BUFRYAMLGEN=$USH_IODA/gen_bufr2ioda_yaml.py
-BUFRJSONGEN=$USH_IODA/gen_bufr2ioda_json.py
-
-# create output directory if it doesn't exist
-mkdir -p $COM_OBS
-if [ $? -ne 0 ]; then
-    echo "cannot make $COM_OBS"
-    exit 1
-fi
-
-# add to pythonpath the necessary libraries
-PYIODALIB=`echo $DIR_ROOT/build/lib/python3.?`
-export PYTHONPATH=${PYIODALIB}:${PYTHONPATH}
-
-#---------------------------------------------------------
-# for some BUFR files, we will use python scripts
-# and for others, bufr2ioda.x
-
-#---------------------------
-#----- python and json -----
-# first specify what observation types will be processed by a script
-BUFR_py="conventional_prepbufr_ps"
-
-for obtype in $BUFR_py; do
-  # this loop assumes that there is a python script and template with the same name
-  echo "Processing ${obtype}..."
-
-  # first generate a JSON from the template
-  ${BUFRJSONGEN} -t ${config_template_dir}/bufr2ioda_${obtype}.json -o ${COM_OBS}/${obtype}_${PDY}${cyc}.json
-#  ${BUFRJSONGEN} -t ${config_template_dir}/bufr2ioda_${obtype}.json -c bufr2ioda_${obtype}.json -o ${COM_OBS}/${obtype}_${PDY}${cyc}.json
-  echo "1 done"
-
-  # now use the converter script for the ob type
-  python3 $USH_IODA/bufr2ioda_${obtype}.py -c ${COM_OBS}/${obtype}_${PDY}${cyc}.json
-  echo "2 done"
-
-  # check if converter was successful
-  if [ $? == 0 ]; then
-    # remove JSON file
-    rm -rf ${COM_OBS}/${obtype}_${PDY}${cyc}.json
-  else
-    # warn and keep the JSON file
-    echo "Problem running converter script for ${obtype}"
-  fi
-done
-
-#----------------------------
-#---- bufr2ioda and yaml ----
-# need to ask Emily which will be YAML based
-BUFR_yaml=""