diff --git a/.gitignore b/.gitignore index 4ec62993d3..49fb3f438a 100644 --- a/.gitignore +++ b/.gitignore @@ -69,6 +69,7 @@ parm/post/params_grib2_tbl_new parm/post/post_tag_gfs128 parm/post/gfs parm/post/gefs +parm/post/sfs parm/post/ocean.csv parm/post/ice.csv parm/post/ocnicepost.nml.jinja2 diff --git a/ci/cases/pr/C96C48_ufs_hybatmDA.yaml b/ci/cases/pr/C96C48_ufs_hybatmDA.yaml index 41a8baa725..031054079a 100644 --- a/ci/cases/pr/C96C48_ufs_hybatmDA.yaml +++ b/ci/cases/pr/C96C48_ufs_hybatmDA.yaml @@ -21,4 +21,4 @@ skip_ci_on_hosts: - gaea - orion - hercules - + - wcoss2 diff --git a/ci/cases/sfs/C96mx100_S2S.yaml b/ci/cases/sfs/C96mx100_S2S.yaml new file mode 100644 index 0000000000..6bdb9a4887 --- /dev/null +++ b/ci/cases/sfs/C96mx100_S2S.yaml @@ -0,0 +1,19 @@ +experiment: + system: gefs + mode: forecast-only + +arguments: + idate: 1994050100 + edate: 1994050100 + pslot: {{ 'pslot' | getenv }} + app: S2S + resdetatmos: 96 + resensatmos: 96 + resdetocean: 1 + start: 'cold' + nens: 10 + comroot: {{ 'RUNTESTS' | getenv }}/COMROOT + expdir: {{ 'RUNTESTS' | getenv }}/EXPDIR + icsdir: {{ 'TOPICDIR' | getenv }}/HR4/C96mx100 + yaml: {{ HOMEgfs }}/ci/cases/yamls/sfs_defaults.yaml + diff --git a/ci/cases/yamls/gefs_defaults_ci.yaml b/ci/cases/yamls/gefs_defaults_ci.yaml index 05a97edd90..a06aed638a 100644 --- a/ci/cases/yamls/gefs_defaults_ci.yaml +++ b/ci/cases/yamls/gefs_defaults_ci.yaml @@ -2,3 +2,11 @@ defaults: !INC {{ HOMEgfs }}/parm/config/gefs/yaml/defaults.yaml base: ACCOUNT: {{ 'HPC_ACCOUNT' | getenv }} + SFS_POST: "NO" + FHOUT_GFS: 6 +stage_ic: + USE_OCN_ENS_PERTURB_FILES: "NO" + USE_ATM_ENS_PERTURB_FILES: "NO" +ocn: + MOM6_INTERP_ICS: "NO" + diff --git a/ci/cases/yamls/gefs_replay_ci.yaml b/ci/cases/yamls/gefs_replay_ci.yaml index dfbd9ae065..b1155aade1 100644 --- a/ci/cases/yamls/gefs_replay_ci.yaml +++ b/ci/cases/yamls/gefs_replay_ci.yaml @@ -11,4 +11,8 @@ base: FHOUT_OCN_GFS: 24 FHOUT_ICE_GFS: 24 HOMEDIR: {{ 'RUNTESTS' | getenv }}/GLOBAL + SFS_POST: "NO" +stage_ic: + USE_OCN_ENS_PERTURB_FILES: "YES" + USE_ATM_ENS_PERTURB_FILES: "YES" diff --git a/ci/cases/yamls/sfs_defaults.yaml b/ci/cases/yamls/sfs_defaults.yaml new file mode 100644 index 0000000000..b1de60ce71 --- /dev/null +++ b/ci/cases/yamls/sfs_defaults.yaml @@ -0,0 +1,33 @@ +base: + DO_JEDIATMVAR: "NO" + DO_JEDIATMENS: "NO" + DO_JEDIOCNVAR: "NO" + DO_JEDISNOWDA: "NO" + DO_MERGENSST: "NO" + DO_BUFRSND: "NO" + DO_GEMPAK: "NO" + DO_AWIPS: "NO" + KEEPDATA: "YES" + DO_EXTRACTVARS: "NO" + FHMAX_GFS: 2976 + FHMAX_HF_GFS: 0 + FHOUT_HF_GFS: 1 + FHOUT_GFS: 24 + FHOUT_OCN_GFS: 24 + FHOUT_ICE_GFS: 24 + FCST_BREAKPOINTS: "" + REPLAY_ICS: "NO" + HPSSARCH: "NO" + LOCALARCH: "NO" + SFS_POST: "YES" + ACCOUNT: {{ 'HPC_ACCOUNT' | getenv }} +fcst: + TYPE: "hydro" + MONO: "mono" + reforecast: "YES" + FHZER: 24 +stage_ic: + USE_OCN_ENS_PERTURB_FILES: "YES" + USE_ATM_ENS_PERTURB_FILES: "YES" +ocn: + MOM6_INTERP_ICS: "YES" diff --git a/ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml b/ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml index c4fa54dcc8..b956066f6b 100644 --- a/ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml +++ b/ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml @@ -17,4 +17,3 @@ nsst: NST_MODEL: "1" sfcanl: DONST: "NO" - diff --git a/modulefiles/module_gwsetup.wcoss2.lua b/modulefiles/module_gwsetup.wcoss2.lua index a2440569db..86bdad3c56 100644 --- a/modulefiles/module_gwsetup.wcoss2.lua +++ b/modulefiles/module_gwsetup.wcoss2.lua @@ -4,5 +4,8 @@ Load environment to run GFS workflow ci scripts on WCOSS2 prepend_path("MODULEPATH", "/apps/ops/test/nco/modulefiles/core") load(pathJoin("rocoto","1.3.5")) +load(pathJoin("PrgEnv-intel")) +load(pathJoin("intel","19.1.3.304")) +load(pathJoin("python", "3.8.6")) whatis("Description: GFS run setup environment") diff --git a/parm/archive/gfs_downstream.yaml.j2 b/parm/archive/gfs_downstream.yaml.j2 index ed5317b42c..94bdd1df56 100644 --- a/parm/archive/gfs_downstream.yaml.j2 +++ b/parm/archive/gfs_downstream.yaml.j2 @@ -6,7 +6,7 @@ gfs_downstream: - "{{ COMIN_ATMOS_GEMPAK | relpath(ROTDIR) }}/gfs_{{ cycle_YMDH }}.sfc" - "{{ COMIN_ATMOS_GEMPAK | relpath(ROTDIR) }}/gfs_{{ cycle_YMDH }}.snd" {% for i in range(1, NUM_SND_COLLECTIVES) %} - - "{{ COMIN_ATMOS_WMO | relpath(ROTDIR) }}/gfs_collective{{ i }}.postsnd_{{ cycle_HH }}" + - "{{ COMIN_ATMOS_BUFR | relpath(ROTDIR) }}/gfs_collective{{ i }}.fil" {% endfor %} - - "{{ COMIN_ATMOS_BUFR | relpath(ROTDIR) }}/bufr.t{{ cycle_HH }}z" + - "{{ COMIN_ATMOS_BUFR | relpath(ROTDIR) }}/bufr.??????.{{ cycle_YMDH }}" - "{{ COMIN_ATMOS_BUFR | relpath(ROTDIR) }}/gfs.t{{ cycle_HH }}z.bufrsnd.tar.gz" diff --git a/parm/config/gefs/config.atmos_products b/parm/config/gefs/config.atmos_products index 73614ba08e..e8aae324e1 100644 --- a/parm/config/gefs/config.atmos_products +++ b/parm/config/gefs/config.atmos_products @@ -25,9 +25,14 @@ fi export FLXGF="NO" # Create interpolated sflux.1p00 file # paramlist files for the different forecast hours and downsets -export paramlista="${PARMgfs}/product/gefs.0p25.fFFF.paramlist.a.txt" -export paramlista_anl="${PARMgfs}/product/gefs.0p25.anl.paramlist.a.txt" -export paramlista_f000="${PARMgfs}/product/gefs.0p25.f000.paramlist.a.txt" -export paramlistb="${PARMgfs}/product/gefs.0p25.fFFF.paramlist.b.txt" +if [[ ${SFS_POST} == "YES" ]]; then + export post_prefix='sfs' +else + export post_prefix='gefs' +fi +export paramlista="${PARMgfs}/product/${post_prefix}.0p25.fFFF.paramlist.a.txt" +export paramlista_anl="${PARMgfs}/product/${post_prefix}.0p25.anl.paramlist.a.txt" +export paramlista_f000="${PARMgfs}/product/${post_prefix}.0p25.f000.paramlist.a.txt" +export paramlistb="${PARMgfs}/product/${post_prefix}.0p25.fFFF.paramlist.b.txt" echo "END: config.atmos_products" diff --git a/parm/config/gefs/config.base b/parm/config/gefs/config.base index 58f33e1b69..d52674b497 100644 --- a/parm/config/gefs/config.base +++ b/parm/config/gefs/config.base @@ -64,6 +64,7 @@ export REALTIME="YES" # Experiment mode (cycled or forecast-only) export MODE="@MODE@" # cycled/forecast-only +export SFS_POST="@SFS_POST@" # TODO, place holder until RUN=SFS is developed #################################################### # DO NOT ADD MACHINE DEPENDENT STUFF BELOW THIS LINE @@ -206,12 +207,13 @@ case "${APP}" in if [[ "${APP}" =~ ^S2SW ]]; then export DO_WAVE="YES" + export WAVE_RUN="both" export cplwav2atm=".true." fi ;; *) - echo "Unrecognized APP: ${1}" - exit 1 + echo "FATAL ERROR: Unrecognized APP: '${APP}'" + exit 2 ;; esac @@ -235,7 +237,6 @@ else export OFFSET_START_HOUR=0 fi - # GFS output and frequency export FHMIN_GFS=0 export FHMAX_GFS="@FHMAX_GFS@" @@ -243,7 +244,7 @@ export FHMAX_GFS="@FHMAX_GFS@" breakpnts="@FCST_BREAKPOINTS@" export FCST_SEGMENTS="${FHMIN_GFS},${breakpnts:+${breakpnts},}${FHMAX_GFS}" -export FHOUT_GFS=6 +export FHOUT_GFS=@FHOUT_GFS@ export FHMAX_HF_GFS=@FHMAX_HF_GFS@ export FHOUT_HF_GFS=@FHOUT_HF_GFS@ export FHOUT_OCN_GFS=@FHOUT_OCN_GFS@ @@ -293,6 +294,7 @@ export ENSMEM=${ENSMEM:-"000"} export MEMDIR="mem${ENSMEM}" export DOIAU="NO" # While we are not doing IAU, we may want to warm start w/ IAU in the future + # Check if cycle is warm starting with IAU if [[ "${EXP_WARM_START}" = ".true." ]]; then if [[ "${DOIAU}" = "YES" ]]; then @@ -324,7 +326,7 @@ export HPSSARCH="@HPSSARCH@" # save data to HPSS archive export LOCALARCH="@LOCALARCH@" # save data to local archive if [[ ${HPSSARCH} = "YES" ]] && [[ ${LOCALARCH} = "YES" ]]; then echo "Both HPSS and local archiving selected. Please choose one or the other." - exit 2 + exit 3 fi export ARCH_CYC=00 # Archive data at this cycle for warm_start capability export ARCH_WARMICFREQ=4 # Archive frequency in days for warm_start capability @@ -335,10 +337,4 @@ export DELETE_COM_IN_ARCHIVE_JOB="YES" # NO=retain ROTDIR. YES default in arc # Number of regional collectives to create soundings for export NUM_SND_COLLECTIVES=${NUM_SND_COLLECTIVES:-9} -# The tracker, genesis, and METplus jobs are not supported on CSPs yet -# TODO: we should place these in workflow/hosts/[aws|azure|google]pw.yaml as part of CSP's setup, not for general. -if [[ "${machine}" =~ "PW" ]]; then - export DO_WAVE="NO" -fi - echo "END: config.base" diff --git a/parm/config/gefs/config.efcs b/parm/config/gefs/config.efcs index 0086121450..27d7be235d 100644 --- a/parm/config/gefs/config.efcs +++ b/parm/config/gefs/config.efcs @@ -27,7 +27,11 @@ source "${EXPDIR}/config.ufs" ${string} source "${EXPDIR}/config.resources" efcs # Stochastic physics parameters (only for ensemble forecasts) -export DO_SKEB="YES" +if [[ "${CASE}" == "C96" ]] ; then + export DO_SKEB="NO" # SKEB turned off for C96 +else + export DO_SKEB="YES" # SKEB turned on for all other resolutions +fi export SKEB="0.8,-999,-999,-999,-999" export SKEB_TAU="2.16E4,2.592E5,2.592E6,7.776E6,3.1536E7" export SKEB_LSCALE="500.E3,1000.E3,2000.E3,2000.E3,2000.E3" diff --git a/parm/config/gefs/config.fcst b/parm/config/gefs/config.fcst index b2a9c10afe..c600c8edbf 100644 --- a/parm/config/gefs/config.fcst +++ b/parm/config/gefs/config.fcst @@ -44,6 +44,7 @@ export FHOUT=${FHOUT_GFS} export FHOUT_HF=${FHOUT_HF_GFS} export FHOUT_OCN=${FHOUT_OCN_GFS} export FHOUT_ICE=${FHOUT_ICE_GFS} +export FHZER=@FHZER@ # Get task specific resources source "${EXPDIR}/config.resources" fcst @@ -66,8 +67,8 @@ export FCSTEXEC="ufs_model.x" ####################################################################### # Model configuration -export TYPE="nh" -export MONO="non-mono" +export TYPE=@TYPE@ +export MONO=@MONO@ # Use stratosphere h2o physics export h2o_phys=".true." @@ -201,6 +202,11 @@ case ${imp_physics} in export hord_xx_nh_nonmono=5 export vtdm4_nh_nonmono=0.02 export nord=2 + if [[ "${TYPE}" == "nh"* ]]; then + export dddmp=0.1 + else + export dddmp=0. + fi export dddmp=0.1 export d4_bg=0.12 ;; @@ -221,7 +227,11 @@ case ${imp_physics} in export vtdm4_nh_nonmono=0.02 export nord=2 export d4_bg=0.12 - export dddmp=0.1 + if [[ "${TYPE}" == "nh"* ]]; then + export dddmp=0.1 + else + export dddmp=0. + fi ;; *) echo "Unknown microphysics option, ABORT!" ;; esac @@ -268,9 +278,7 @@ else export io_layout="1,1" fi -if (( OFFSET_START_HOUR != 0 )); then - export reforecast="YES" -fi +export reforecast=@reforecast@ # Remember config.efcs will over-ride these values for ensemble forecasts # if these variables are re-defined there. # Otherwise, the ensemble forecast will inherit from config.fcst diff --git a/parm/config/gefs/config.stage_ic b/parm/config/gefs/config.stage_ic index cac65c74b9..92c6bb2a9b 100644 --- a/parm/config/gefs/config.stage_ic +++ b/parm/config/gefs/config.stage_ic @@ -30,4 +30,8 @@ if [[ -z "${ICSDIR}" ]] ; then fi +#use of perturbations files for ensembles +export USE_OCN_ENS_PERTURB_FILES=@USE_OCN_ENS_PERTURB_FILES@ +export USE_ATM_ENS_PERTURB_FILES=@USE_ATM_ENS_PERTURB_FILES@ + echo "END: config.stage_ic" diff --git a/parm/config/gefs/config.ufs b/parm/config/gefs/config.ufs index bc3950490e..5b7ba4c0af 100644 --- a/parm/config/gefs/config.ufs +++ b/parm/config/gefs/config.ufs @@ -80,7 +80,7 @@ case "${fv3_res}" in export nthreads_fv3_gfs=1 export nthreads_ufs=1 export nthreads_ufs_gfs=1 - export xr_cnvcld=.false. # Do not pass conv. clouds to Xu-Randall cloud fraction + export xr_cnvcld=".true." # Pass conv. clouds to Xu-Randall cloud fraction export cdmbgwd="0.071,2.1,1.0,1.0" # mountain blocking, ogwd, cgwd, cgwd src scaling export cdmbgwd_gsl="40.0,1.77,1.0,1.0" # settings for GSL drag suite export k_split=1 @@ -98,13 +98,13 @@ case "${fv3_res}" in export DELTIM=600 export layout_x=2 export layout_y=2 - export layout_x_gfs=2 - export layout_y_gfs=2 + export layout_x_gfs=4 + export layout_y_gfs=4 export nthreads_fv3=1 export nthreads_fv3_gfs=1 export nthreads_ufs=1 export nthreads_ufs_gfs=1 - export xr_cnvcld=".false." # Do not pass conv. clouds to Xu-Randall cloud fraction + export xr_cnvcld=".true." # Pass conv. clouds to Xu-Randall cloud fraction export cdmbgwd="0.14,1.8,1.0,1.0" # mountain blocking, ogwd, cgwd, cgwd src scaling export cdmbgwd_gsl="20.0,2.5,1.0,1.0" # settings for GSL drag suite export knob_ugwp_tauamp=3.0e-3 # setting for UGWPv1 non-stationary GWD @@ -131,6 +131,7 @@ case "${fv3_res}" in export cdmbgwd="0.23,1.5,1.0,1.0" # mountain blocking, ogwd, cgwd, cgwd src scaling export cdmbgwd_gsl="10.0,3.5,1.0,1.0" # settings for GSL drag suite export knob_ugwp_tauamp=1.5e-3 # setting for UGWPv1 non-stationary GWD + export xr_cnvcld=".true." # Pass conv. clouds to Xu-Randall cloud fraction export k_split=2 export n_split=4 export tau=6.0 @@ -337,7 +338,7 @@ if [[ "${skip_mom6}" == "false" ]]; then DT_THERM_MOM6='3600' FRUNOFF="runoff.daitren.clim.1deg.nc" CHLCLIM="seawifs_1998-2006_smoothed_2X.nc" - MOM6_RESTART_SETTING='r' + MOM6_RESTART_SETTING=${MOM6_RESTART_SETTING:-'r'} MOM6_RIVER_RUNOFF='False' eps_imesh="2.5e-1" TOPOEDITS="ufs.topo_edits_011818.nc" diff --git a/parm/config/gefs/yaml/defaults.yaml b/parm/config/gefs/yaml/defaults.yaml index b5870b3e7e..f0e8772b67 100644 --- a/parm/config/gefs/yaml/defaults.yaml +++ b/parm/config/gefs/yaml/defaults.yaml @@ -15,7 +15,20 @@ base: FCST_BREAKPOINTS: "48" REPLAY_ICS: "NO" USE_OCN_PERTURB_FILES: "false" + FHOUT_GFS: 6 FHOUT_OCN_GFS: 6 FHOUT_ICE_GFS: 6 HPSSARCH: "NO" LOCALARCH: "NO" + SFS_POST: "NO" +fcst: + reforecast: "NO" + FHZER: 6 + TYPE: "nh" + MONO: "non-mono" +stage_ic: + USE_OCN_ENS_PERTURB_FILES: "NO" + USE_ATM_ENS_PERTURB_FILES: "NO" +ocn: + MOM6_INTERP_ICS: "NO" + diff --git a/parm/config/gfs/config.aero b/parm/config/gfs/config.aero index f49593a439..bbfb782636 100644 --- a/parm/config/gfs/config.aero +++ b/parm/config/gfs/config.aero @@ -2,36 +2,8 @@ # UFS-Aerosols settings -# Turn off warnings about unused variables -# shellcheck disable=SC2034 - - # Path to the input data tree -case ${machine} in - "HERA") - AERO_INPUTS_DIR="/scratch1/NCEPDEV/global/glopara/data/gocart_emissions" - ;; - "ORION" | "HERCULES") - AERO_INPUTS_DIR="/work2/noaa/global/wkolczyn/noscrub/global-workflow/gocart_emissions" - ;; - "S4") - AERO_INPUTS_DIR="/data/prod/glopara/gocart_emissions" - ;; - "WCOSS2") - AERO_INPUTS_DIR="/lfs/h2/emc/global/noscrub/emc.global/data/gocart_emissions" - ;; - "GAEA") - AERO_INPUTS_DIR="/gpfs/f5/epic/proj-shared/global/glopara/data/gocart_emissions" - ;; - "JET") - AERO_INPUTS_DIR="/lfs5/HFIP/hfv3gfs/glopara/data/gocart_emissions" - ;; - *) - echo "FATAL ERROR: Machine ${machine} unsupported for aerosols" - exit 2 - ;; -esac -export AERO_INPUTS_DIR +export AERO_INPUTS_DIR=@AERO_INPUTS_DIR@ export AERO_DIAG_TABLE="${PARMgfs}/ufs/fv3/diag_table.aero" export AERO_FIELD_TABLE="${PARMgfs}/ufs/fv3/field_table.aero" diff --git a/parm/config/gfs/config.base b/parm/config/gfs/config.base index a274069f41..b0d4fbf42a 100644 --- a/parm/config/gfs/config.base +++ b/parm/config/gfs/config.base @@ -254,7 +254,7 @@ case "${APP}" in ;; *) echo "Unrecognized APP: '${APP}'" - exit 1 + exit 2 ;; esac @@ -457,7 +457,7 @@ export HPSSARCH="@HPSSARCH@" # save data to HPSS archive export LOCALARCH="@LOCALARCH@" # save data to local archive if [[ ${HPSSARCH} = "YES" ]] && [[ ${LOCALARCH} = "YES" ]]; then echo "Both HPSS and local archiving selected. Please choose one or the other." - exit 2 + exit 3 fi export ARCH_CYC=00 # Archive data at this cycle for warm_start capability export ARCH_WARMICFREQ=4 # Archive frequency in days for warm_start capability @@ -478,20 +478,4 @@ export OFFSET_START_HOUR=0 # Number of regional collectives to create soundings for export NUM_SND_COLLECTIVES=${NUM_SND_COLLECTIVES:-9} -# The tracker, genesis, and METplus jobs are not supported on CSPs yet -# TODO: we should place these in workflow/hosts/awspw.yaml as part of AWS/AZURE setup, not for general. -if [[ "${machine}" =~ "PW" ]]; then - export DO_TRACKER="NO" - export DO_GENESIS="NO" - export DO_METP="NO" - export DO_WAVE="NO" -fi - -# The tracker and genesis are not installed on Orion/Hercules yet; this requires spack-stack builds of the package. -# TODO: we should place these in workflow/hosts/[orion|hercules].yaml. -if [[ "${machine}" == "ORION" || "${machine}" == "HERCULES" ]]; then - export DO_TRACKER="NO" - export DO_GENESIS="NO" -fi - echo "END: config.base" diff --git a/parm/config/gfs/config.ocn b/parm/config/gfs/config.ocn index 317a76e58a..f7c7559f9a 100644 --- a/parm/config/gfs/config.ocn +++ b/parm/config/gfs/config.ocn @@ -24,6 +24,11 @@ else export ODA_INCUPD_NHOURS="3.0" fi - - +MOM6_INTERP_ICS=@MOM6_INTERP_ICS@ +if [[ "${MOM6_INTERP_ICS}" == "YES" ]]; then + export MOM6_RESTART_SETTING='n' + export MOM6_WARMSTART_FILE="MOM.res.nc" + export MOM6_INIT_FROM_Z='False' + export MOM6_INIT_UV='file' +fi echo "END: config.ocn" diff --git a/parm/config/gfs/config.prepoceanobs b/parm/config/gfs/config.prepoceanobs index 0963a5c42d..3aeff8a3de 100644 --- a/parm/config/gfs/config.prepoceanobs +++ b/parm/config/gfs/config.prepoceanobs @@ -14,7 +14,12 @@ export OBS_LIST=@SOCA_OBS_LIST@ export OBS_YAML=${OBS_LIST} # ocean analysis needs own dmpdir until standard dmpdir has full ocean obs -export DMPDIR=@DMPDIR@ +use_exp_obs="@use_exp_obs@" +if [[ "${use_exp_obs}" == "YES" ]]; then + dmpdir_exp="@dmpdir_exp@" +fi + +export DMPDIR="${dmpdir_exp:-${DMPDIR}}" # For BUFR2IODA json and python scripts export JSON_TMPL_DIR="${PARMgfs}/gdas/ioda/bufr2ioda" diff --git a/parm/config/gfs/config.stage_ic b/parm/config/gfs/config.stage_ic index 7aa0c25f32..d0113fac63 100644 --- a/parm/config/gfs/config.stage_ic +++ b/parm/config/gfs/config.stage_ic @@ -29,4 +29,8 @@ if [[ -z "${ICSDIR}" ]] ; then fi +#use of perturbations files for ensembles +export USE_OCN_ENS_PERTURB_FILES="NO" +export USE_ATM_ENS_PERTURB_FILES="NO" + echo "END: config.stage_ic" diff --git a/parm/config/gfs/yaml/defaults.yaml b/parm/config/gfs/yaml/defaults.yaml index dfc67d1237..78caf46f5d 100644 --- a/parm/config/gfs/yaml/defaults.yaml +++ b/parm/config/gfs/yaml/defaults.yaml @@ -61,4 +61,9 @@ prepoceanobs: SOCA_INPUT_FIX_DIR: "${FIXgfs}/gdas/soca/72x35x25/soca" SOCA_OBS_LIST: "${PARMgfs}/gdas/soca/obs/obs_list.yaml" # TODO: This is also repeated in ocnanal OBSPREP_YAML: "${PARMgfs}/gdas/soca/obsprep/obsprep_config.yaml" - DMPDIR: "${BASE_DATA}/experimental_obs" + use_exp_obs: "YES" + dmpdir_exp: "${BASE_DATA}/experimental_obs" + +# config.aero has just a system-specific path to add. +# This is handled by the setup_expt.py, but it has to be told to write to it. +aero: {} diff --git a/parm/product/sfs.0p25.f000.paramlist.a.txt b/parm/product/sfs.0p25.f000.paramlist.a.txt new file mode 100644 index 0000000000..4fdb8f9713 --- /dev/null +++ b/parm/product/sfs.0p25.f000.paramlist.a.txt @@ -0,0 +1,39 @@ +:HGT:surface: +:PRMSL:mean sea level: +:PRES:surface: +:TMP:2 m above ground: +:TMAX:2 m above ground: +:TMIN:2 m above ground: +:RH:2 m above ground: +:DPT:2 m above ground: +:UGRD:10 m above ground: +:VGRD:10 m above ground: +:APCP:surface: +:CRAIN:surface: +:CSNOW:surface: +:CFRZR:surface: +:CICEP:surface: +:PWAT:entire atmosphere (considered as a single layer): +:CAPE:180-0 mb above ground: +:CAPE:surface: +:CIN:180-0 mb above ground: +:CIN:surface: +:CPOFP:surface: +:HLCY:3000-0 m above ground: +:TCDC:entire atmosphere: +:WEASD:surface: +:SNOD:surface: +:ULWRF:top of atmosphere: +:DSWRF:surface: +:DLWRF:surface: +:USWRF:surface: +:ULWRF:surface: +:GUST:surface: +:SHTFL:surface: +:LHTFL:surface: +:ICETK:surface: +:TSOIL:0-0.1 +:SOILW:0-0.1 +:MSLET:mean sea level: +:VIS:surface: +:HGT:cloud ceiling: diff --git a/parm/product/sfs.0p25.fFFF.paramlist.a.txt b/parm/product/sfs.0p25.fFFF.paramlist.a.txt new file mode 100644 index 0000000000..7e5497f1d2 --- /dev/null +++ b/parm/product/sfs.0p25.fFFF.paramlist.a.txt @@ -0,0 +1,52 @@ +:PRMSL:mean sea level: +:PRES:surface: +:TMP:surface: +:TMP:2 m above ground: +:TMP:850 mb: +:TMP:500 mb: +:TMP:200 mb: +:TMAX:2 m above ground: +:TMIN:2 m above ground: +:RH:2 m above ground: +:DPT:2 m above ground: +:UGRD:10 m above ground: +:UGRD:850 mb: +:UGRD:500 mb: +:UGRD:200 mb: +:VGRD:10 m above ground: +:VGRD:850 mb: +:VGRD:500 mb: +:VGRD:200 mb: +:HGT:850 mb: +:HGT:500 mb: +:HGT:200 mb: +:APCP:surface: +:CRAIN:surface: +:CSNOW:surface: +:CFRZR:surface: +:CICEP:surface: +:FDNSSTMP:surface: +:PWAT:entire atmosphere (considered as a single layer): +:CAPE:180-0 mb above ground: +:CAPE:surface: +:CIN:180-0 mb above ground: +:CIN:surface: +:HLCY:3000-0 m above ground: +:TCDC:entire atmosphere (considered as a single layer): +:WEASD:surface: +:SNOD:surface: +:ULWRF:top of atmosphere: +:DSWRF:surface: +:CPOFP:surface: +:DLWRF:surface: +:USWRF:surface: +:ULWRF:surface: +:GUST:surface: +:SHTFL:surface: +:LHTFL:surface: +:ICETK:surface: +:TSOIL:0-0.1 +:SOILW:0-0.1 +:MSLET:mean sea level: +:VIS:surface: +:HGT:cloud ceiling: diff --git a/parm/product/sfs.0p25.fFFF.paramlist.b.txt b/parm/product/sfs.0p25.fFFF.paramlist.b.txt new file mode 100644 index 0000000000..3a44c0e042 --- /dev/null +++ b/parm/product/sfs.0p25.fFFF.paramlist.b.txt @@ -0,0 +1,549 @@ +############################# sorted pgrb2a + pgrb2b 201502 +:4LFTX:surface: +:5WAVH:500 mb: +:ABSV:1000 mb: +:ABSV:100 mb: +:ABSV:10 mb: +:ABSV:150 mb: +:ABSV:200 mb: +:ABSV:20 mb: +:ABSV:250 mb: +:ABSV:300 mb: +:ABSV:30 mb: +:ABSV:350 mb: +:ABSV:400 mb: +:ABSV:450 mb: +:ABSV:500 mb: +:ABSV:50 mb: +:ABSV:550 mb: +:ABSV:600 mb: +:ABSV:650 mb: +:ABSV:700 mb: +:ABSV:70 mb: +:ABSV:750 mb: +:ABSV:800 mb: +:ABSV:850 mb: +:ABSV:900 mb: +:ABSV:925 mb: +:ABSV:950 mb: +:ABSV:975 mb: +:ACPCP:surface: +:ALBDO:surface: +:BRTMP:top of atmosphere: +:CAPE:255-0 mb above ground: +:CDUVB:surface: +:CIN:255-0 mb above ground: +:CLWMR:1000 mb: +:CLWMR:100 mb: +:CLWMR:10 mb: +:CLWMR:150 mb: +:CLWMR:200 mb: +:CLWMR:20 mb: +:CLWMR:250 mb: +:CLWMR:300 mb: +:CLWMR:30 mb: +:CLWMR:350 mb: +:CLWMR:400 mb: +:CLWMR:450 mb: +:CLWMR:500 mb: +:CLWMR:50 mb: +:CLWMR:550 mb: +:CLWMR:600 mb: +:CLWMR:650 mb: +:CLWMR:700 mb: +:CLWMR:70 mb: +:CLWMR:750 mb: +:CLWMR:800 mb: +:CLWMR:850 mb: +:CLWMR:900 mb: +:CLWMR:925 mb: +:CLWMR:950 mb: +:CLWMR:975 mb: +:CNWAT:surface: +:CPRAT:surface: +:CWAT:entire atmosphere (considered as a single layer): +:CWORK:entire atmosphere (considered as a single layer): +:DPT:30-0 mb above ground: +:DUVB:surface: +:FLDCP:surface: +:FRICV:surface: +:GFLUX:surface: +:HGT:0C isotherm: +:HGT:1000 mb: +:HGT:100 mb: +:HGT:10 mb: +:HGT:1 mb: +:HGT:150 mb: +:HGT:200 mb: +:HGT:20 mb: +:HGT:2 mb: +:HGT:250 mb: +:HGT:300 mb: +:HGT:30 mb: +:HGT:3 mb: +:HGT:350 mb: +:HGT:400 mb: +:HGT:450 mb: +:HGT:500 mb: +:HGT:50 mb: +:HGT:5 mb: +:HGT:550 mb: +:HGT:600 mb: +:HGT:650 mb: +:HGT:700 mb: +:HGT:70 mb: +:HGT:7 mb: +:HGT:750 mb: +:HGT:800 mb: +:HGT:850 mb: +:HGT:900 mb: +:HGT:925 mb: +:HGT:950 mb: +:HGT:975 mb: +:HGT:highest tropospheric freezing level: +:HGT:max wind: +:HGT:PV=-1.5e-06 (Km^2/kg/s) surface: +:HGT:PV=1.5e-06 (Km^2/kg/s) surface: +:HGT:PV=-1e-06 (Km^2/kg/s) surface: +:HGT:PV=1e-06 (Km^2/kg/s) surface: +:HGT:PV=-2e-06 (Km^2/kg/s) surface: +:HGT:PV=2e-06 (Km^2/kg/s) surface: +:HGT:PV=-5e-07 (Km^2/kg/s) surface: +:HGT:PV=5e-07 (Km^2/kg/s) surface: +:HGT:surface: +:HGT:tropopause: +:HINDEX:surface: +:HPBL:surface: +:ICAHT:max wind: +:ICAHT:tropopause: +:ICEC:surface: +:ICIP:300 mb: +:ICIP:400 mb: +:ICIP:500 mb: +:ICIP:600 mb: +:ICIP:700 mb: +:ICIP:800 mb: +:ICSEV:300 mb: +:ICSEV:400 mb: +:ICSEV:500 mb: +:ICSEV:600 mb: +:ICSEV:700 mb: +:ICSEV:800 mb: +:LAND:surface: +:LFTX:surface: +:MNTSF:320 K isentropic level: +:NCPCP:surface: +:O3MR:100 mb: +:O3MR:10 mb: +:O3MR:125 mb: +:O3MR:150 mb: +:O3MR:1 mb: +:O3MR:200 mb: +:O3MR:20 mb: +:O3MR:250 mb: +:O3MR:2 mb: +:O3MR:300 mb: +:O3MR:30 mb: +:O3MR:350 mb: +:O3MR:3 mb: +:O3MR:400 mb: +:O3MR:50 mb: +:O3MR:5 mb: +:O3MR:70 mb: +:O3MR:7 mb: +:PEVPR:surface: +:PLI:30-0 mb above ground: +:PLPL:255-0 mb above ground: +:POT:0.995 sigma level: +:PRATE:surface: +:PRES:80 m above ground: +:PRES:convective cloud bottom level: +:PRES:convective cloud top level: +:PRES:high cloud bottom level: +:PRES:high cloud top level: +:PRES:low cloud bottom level: +:PRES:low cloud top level: +:PRES:max wind: +:PRES:mean sea level: +:PRES:middle cloud bottom level: +:PRES:middle cloud top level: +:PRES:PV=-1.5e-06 (Km^2/kg/s) surface: +:PRES:PV=1.5e-06 (Km^2/kg/s) surface: +:PRES:PV=-1e-06 (Km^2/kg/s) surface: +:PRES:PV=1e-06 (Km^2/kg/s) surface: +:PRES:PV=-2e-06 (Km^2/kg/s) surface: +:PRES:PV=2e-06 (Km^2/kg/s) surface: +:PRES:PV=-5e-07 (Km^2/kg/s) surface: +:PRES:PV=5e-07 (Km^2/kg/s) surface: +:PRES:tropopause: +:PVORT:310 K isentropic level: +:PVORT:320 K isentropic level: +:PVORT:350 K isentropic level: +:PVORT:450 K isentropic level: +:PVORT:550 K isentropic level: +:PVORT:650 K isentropic level: +:PWAT:30-0 mb above ground: +:RH:0.33-1 sigma layer: +:RH:0.44-0.72 sigma layer: +:RH:0.44-1 sigma layer: +:RH:0.72-0.94 sigma layer: +:RH:0.995 sigma level: +:RH:0C isotherm: +:RH:1000 mb: +:RH:100 mb: +:RH:10 mb: +:RH:120-90 mb above ground: +:RH:150-120 mb above ground: +:RH:150 mb: +:RH:180-150 mb above ground: +:RH:200 mb: +:RH:20 mb: +:RH:250 mb: +:RH:300 mb: +:RH:30-0 mb above ground: +:RH:30 mb: +:RH:350 mb: +:RH:400 mb: +:RH:450 mb: +:RH:500 mb: +:RH:50 mb: +:RH:550 mb: +:RH:600 mb: +:RH:60-30 mb above ground: +:RH:650 mb: +:RH:700 mb: +:RH:70 mb: +:RH:750 mb: +:RH:800 mb: +:RH:850 mb: +:RH:900 mb: +:RH:90-60 mb above ground: +:RH:925 mb: +:RH:950 mb: +:RH:975 mb: +:RH:entire atmosphere (considered as a single layer): +:RH:highest tropospheric freezing level: +:SFCR:surface: +:SNOWC:surface: +:SNOHF:surface: +:SOILL:0-0.1 m below ground: +:SOILL:0.1-0.4 m below ground: +:SOILL:0.4-1 m below ground: +:SOILL:1-2 m below ground: +:SOILW:0.1-0.4 m below ground: +:SOILW:0.4-1 m below ground: +:SOILW:1-2 m below ground: +:SPFH:1000 mb: +:SPFH:100 mb: +:SPFH:10 mb: +:SPFH:1 mb: +:SPFH:120-90 mb above ground: +:SPFH:150-120 mb above ground: +:SPFH:150 mb: +:SPFH:180-150 mb above ground: +:SPFH:200 mb: +:SPFH:20 mb: +:SPFH:2 mb: +:SPFH:250 mb: +:SPFH:2 m above ground: +:SPFH:300 mb: +:SPFH:30-0 mb above ground: +:SPFH:30 mb: +:SPFH:3 mb: +:SPFH:350 mb: +:SPFH:400 mb: +:SPFH:450 mb: +:SPFH:500 mb: +:SPFH:50 mb: +:SPFH:5 mb: +:SPFH:550 mb: +:SPFH:600 mb: +:SPFH:60-30 mb above ground: +:SPFH:650 mb: +:SPFH:700 mb: +:SPFH:70 mb: +:SPFH:7 mb: +:SPFH:750 mb: +:SPFH:800 mb: +:SPFH:80 m above ground: +:SPFH:850 mb: +:SPFH:900 mb: +:SPFH:90-60 mb above ground: +:SPFH:925 mb: +:SPFH:950 mb: +:SPFH:975 mb: +:SUNSD:surface: +:TCDC:475 mb: +:TCDC:boundary layer cloud layer: +:TCDC:convective cloud layer: +:TCDC:high cloud layer: +:TCDC:low cloud layer: +:TCDC:middle cloud layer: +:TMP:0.995 sigma level: +:TMP:1000 mb: +:TMP:100 m above ground: +:TMP:100 mb: +:TMP:10 mb: +:TMP:1 mb: +:TMP:120-90 mb above ground: +:TMP:150-120 mb above ground: +:TMP:150 mb: +:TMP:180-150 mb above ground: +:TMP:1829 m above mean sea level: +:TMP:200 mb: +:TMP:20 mb: +:TMP:2 mb: +:TMP:250 mb: +:TMP:2743 m above mean sea level: +:TMP:300 mb: +:TMP:30-0 mb above ground: +:TMP:305 m above mean sea level: +:TMP:30 mb: +:TMP:3 mb: +:TMP:320 K isentropic level: +:TMP:350 mb: +:TMP:3658 m above mean sea level: +:TMP:400 mb: +:TMP:450 K isentropic level: +:TMP:450 mb: +:TMP:4572 m above mean sea level: +:TMP:457 m above mean sea level: +:TMP:500 mb: +:TMP:50 mb: +:TMP:5 mb: +:TMP:550 K isentropic level: +:TMP:550 mb: +:TMP:600 mb: +:TMP:60-30 mb above ground: +:TMP:610 m above mean sea level: +:TMP:650 K isentropic level: +:TMP:650 mb: +:TMP:700 mb: +:TMP:70 mb: +:TMP:7 mb: +:TMP:750 mb: +:TMP:800 mb: +:TMP:80 m above ground: +:TMP:850 mb: +:TMP:900 mb: +:TMP:90-60 mb above ground: +:TMP:914 m above mean sea level: +:TMP:925 mb: +:TMP:950 mb: +:TMP:975 mb: +:TMP:high cloud top level: +:TMP:low cloud top level: +:TMP:max wind: +:TMP:middle cloud top level: +:TMP:PV=-1.5e-06 (Km^2/kg/s) surface: +:TMP:PV=1.5e-06 (Km^2/kg/s) surface: +:TMP:PV=-1e-06 (Km^2/kg/s) surface: +:TMP:PV=1e-06 (Km^2/kg/s) surface: +:TMP:PV=-2e-06 (Km^2/kg/s) surface: +:TMP:PV=2e-06 (Km^2/kg/s) surface: +:TMP:PV=-5e-07 (Km^2/kg/s) surface: +:TMP:PV=5e-07 (Km^2/kg/s) surface: +:TMP:tropopause: +:TOZNE:entire atmosphere (considered as a single layer): +:TSNOWP:surface: +:TSOIL:0.1-0.4 m below ground: +:TSOIL:0.4-1 m below ground: +:TSOIL:1-2 m below ground: +:UFLX:surface: +:UGRD:0.995 sigma level: +:UGRD:1000 mb: +:UGRD:100 m above ground: +:UGRD:100 mb: +:UGRD:10 mb: +:UGRD:1 mb: +:UGRD:120-90 mb above ground: +:UGRD:150-120 mb above ground: +:UGRD:150 mb: +:UGRD:180-150 mb above ground: +:UGRD:1829 m above mean sea level: +:UGRD:20 mb: +:UGRD:2 mb: +:UGRD:250 mb: +:UGRD:2743 m above mean sea level: +:UGRD:300 mb: +:UGRD:30-0 mb above ground: +:UGRD:305 m above mean sea level: +:UGRD:30 mb: +:UGRD:3 mb: +:UGRD:320 K isentropic level: +:UGRD:350 mb: +:UGRD:3658 m above mean sea level: +:UGRD:400 mb: +:UGRD:450 K isentropic level: +:UGRD:450 mb: +:UGRD:4572 m above mean sea level: +:UGRD:457 m above mean sea level: +:UGRD:50 mb: +:UGRD:5 mb: +:UGRD:550 K isentropic level: +:UGRD:550 mb: +:UGRD:600 mb: +:UGRD:60-30 mb above ground: +:UGRD:610 m above mean sea level: +:UGRD:650 K isentropic level: +:UGRD:650 mb: +:UGRD:700 mb: +:UGRD:70 mb: +:UGRD:7 mb: +:UGRD:750 mb: +:UGRD:800 mb: +:UGRD:80 m above ground: +:UGRD:900 mb: +:UGRD:90-60 mb above ground: +:UGRD:914 m above mean sea level: +:UGRD:925 mb: +:UGRD:950 mb: +:UGRD:975 mb: +:UGRD:max wind: +:UGRD:planetary boundary layer: +:UGRD:PV=-1.5e-06 (Km^2/kg/s) surface: +:UGRD:PV=1.5e-06 (Km^2/kg/s) surface: +:UGRD:PV=-1e-06 (Km^2/kg/s) surface: +:UGRD:PV=1e-06 (Km^2/kg/s) surface: +:UGRD:PV=-2e-06 (Km^2/kg/s) surface: +:UGRD:PV=2e-06 (Km^2/kg/s) surface: +:UGRD:PV=-5e-07 (Km^2/kg/s) surface: +:UGRD:PV=5e-07 (Km^2/kg/s) surface: +:UGRD:tropopause: +:U-GWD:surface: +:USTM:6000-0 m above ground: +:USWRF:top of atmosphere: +:APTMP:2 m above ground +:VFLX:surface: +:VGRD:0.995 sigma level: +:VGRD:1000 mb: +:VGRD:100 m above ground: +:VGRD:100 mb: +:VGRD:10 mb: +:VGRD:1 mb: +:VGRD:120-90 mb above ground: +:VGRD:150-120 mb above ground: +:VGRD:150 mb: +:VGRD:180-150 mb above ground: +:VGRD:1829 m above mean sea level: +:VGRD:200 mb: +:VGRD:20 mb: +:VGRD:2 mb: +:VGRD:250 mb: +:VGRD:2743 m above mean sea level: +:VGRD:300 mb: +:VGRD:30-0 mb above ground: +:VGRD:305 m above mean sea level: +:VGRD:30 mb: +:VGRD:3 mb: +:VGRD:320 K isentropic level: +:VGRD:350 mb: +:VGRD:3658 m above mean sea level: +:VGRD:400 mb: +:VGRD:450 K isentropic level: +:VGRD:450 mb: +:VGRD:4572 m above mean sea level: +:VGRD:457 m above mean sea level: +:VGRD:50 mb: +:VGRD:5 mb: +:VGRD:550 K isentropic level: +:VGRD:550 mb: +:VGRD:600 mb: +:VGRD:60-30 mb above ground: +:VGRD:610 m above mean sea level: +:VGRD:650 K isentropic level: +:VGRD:650 mb: +:VGRD:700 mb: +:VGRD:70 mb: +:VGRD:7 mb: +:VGRD:750 mb: +:VGRD:800 mb: +:VGRD:80 m above ground: +:VGRD:900 mb: +:VGRD:90-60 mb above ground: +:VGRD:914 m above mean sea level: +:VGRD:925 mb: +:VGRD:950 mb: +:VGRD:975 mb: +:VGRD:max wind: +:VGRD:planetary boundary layer: +:VGRD:PV=-1.5e-06 (Km^2/kg/s) surface: +:VGRD:PV=1.5e-06 (Km^2/kg/s) surface: +:VGRD:PV=-1e-06 (Km^2/kg/s) surface: +:VGRD:PV=1e-06 (Km^2/kg/s) surface: +:VGRD:PV=-2e-06 (Km^2/kg/s) surface: +:VGRD:PV=2e-06 (Km^2/kg/s) surface: +:VGRD:PV=-5e-07 (Km^2/kg/s) surface: +:VGRD:PV=5e-07 (Km^2/kg/s) surface: +:VGRD:tropopause: +:V-GWD:surface: +:VRATE:planetary boundary layer: +:VSTM:6000-0 m above ground: +:VVEL:0.995 sigma level: +:VVEL:1 mb: +:VVEL:2 mb: +:VVEL:3 mb: +:VVEL:5 mb: +:VVEL:7 mb: +:VVEL:10 mb: +:VVEL:20 mb: +:VVEL:30 mb: +:VVEL:50 mb: +:VVEL:70 mb: +:VVEL:1000 mb: +:VVEL:100 mb: +:VVEL:150 mb: +:VVEL:200 mb: +:VVEL:250 mb: +:VVEL:300 mb: +:VVEL:350 mb: +:VVEL:400 mb: +:VVEL:450 mb: +:VVEL:500 mb: +:VVEL:550 mb: +:VVEL:600 mb: +:VVEL:650 mb: +:VVEL:700 mb: +:VVEL:750 mb: +:VVEL:800 mb: +:VVEL:850 mb: +:VVEL:900 mb: +:VVEL:925 mb: +:VVEL:950 mb: +:VVEL:975 mb: +:VWSH:PV=-1.5e-06 (Km^2/kg/s) surface: +:VWSH:PV=1.5e-06 (Km^2/kg/s) surface: +:VWSH:PV=-1e-06 (Km^2/kg/s) surface: +:VWSH:PV=1e-06 (Km^2/kg/s) surface: +:VWSH:PV=-2e-06 (Km^2/kg/s) surface: +:VWSH:PV=2e-06 (Km^2/kg/s) surface: +:VWSH:PV=-5e-07 (Km^2/kg/s) surface: +:VWSH:PV=5e-07 (Km^2/kg/s) surface: +:VWSH:tropopause: +:WATR:surface: +:WILT:surface: +:PRES:1 hybrid level: +:HGT:1 hybrid level: +:TMP:1 hybrid level: +:RH:1 hybrid level: +:UGRD:1 hybrid level: +:VGRD:1 hybrid level: +:PRES:2 hybrid level: +:HGT:2 hybrid level: +:TMP:2 hybrid level: +:RH:2 hybrid level: +:UGRD:2 hybrid level: +:VGRD:2 hybrid level: +:PRES:3 hybrid level: +:HGT:3 hybrid level: +:TMP:3 hybrid level: +:RH:3 hybrid level: +:UGRD:3 hybrid level: +:VGRD:3 hybrid level: +:PRES:4 hybrid level: +:HGT:4 hybrid level: +:TMP:4 hybrid level: +:RH:4 hybrid level: +:UGRD:4 hybrid level: +:VGRD:4 hybrid level: +;############################ do not leave a blank line at the end diff --git a/parm/stage/master_gefs.yaml.j2 b/parm/stage/master_gefs.yaml.j2 index 2bfe3a9d58..4f8f645b02 100644 --- a/parm/stage/master_gefs.yaml.j2 +++ b/parm/stage/master_gefs.yaml.j2 @@ -114,7 +114,7 @@ {% endfilter %} {% endif %} -{% if REPLAY_ICS %} +{% if USE_ATM_ENS_PERTURB_FILES %} {% filter indent(width=4) %} {% include "atmosphere_ens_perturbations.yaml.j2" %} {% endfilter %} @@ -135,7 +135,7 @@ {% include "ocean_rerun.yaml.j2" %} {% endfilter %} {% endif %} -{% if REPLAY_ICS %} +{% if USE_OCN_ENS_PERTURB_FILES %} {% filter indent(width=4) %} {% include "ocean_ens_perturbations.yaml.j2" %} {% endfilter %} diff --git a/scripts/exglobal_stage_ic.py b/scripts/exglobal_stage_ic.py index d737d83b47..1a49c4f64d 100755 --- a/scripts/exglobal_stage_ic.py +++ b/scripts/exglobal_stage_ic.py @@ -22,7 +22,8 @@ def main(): 'assim_freq', 'current_cycle', 'previous_cycle', 'ROTDIR', 'ICSDIR', 'STAGE_IC_YAML_TMPL', 'DO_JEDIATMVAR', 'OCNRES', 'waveGRD', 'ntiles', 'DOIAU', 'DO_JEDIOCNVAR', - 'REPLAY_ICS', 'DO_WAVE', 'DO_OCN', 'DO_ICE', 'DO_NEST'] + 'REPLAY_ICS', 'DO_WAVE', 'DO_OCN', 'DO_ICE', 'DO_NEST', + 'USE_ATM_ENS_PERTURB_FILES', 'USE_OCN_ENS_PERTURB_FILES'] stage_dict = AttrDict() for key in keys: diff --git a/sorc/build_all.sh b/sorc/build_all.sh index b2f4e6ce0e..e75c853c39 100755 --- a/sorc/build_all.sh +++ b/sorc/build_all.sh @@ -16,7 +16,7 @@ function _usage() { Builds all of the global-workflow components by calling the individual build scripts in sequence. -Usage: ${BASH_SOURCE[0]} [-a UFS_app][-c build_config][-d][-f][-h][-j n][-v][-w] +Usage: ${BASH_SOURCE[0]} [-a UFS_app][-c build_config][-d][-f][-h][-j n][-v][-w][-y] -a UFS_app: Build a specific UFS app instead of the default -d: @@ -37,6 +37,8 @@ Usage: ${BASH_SOURCE[0]} [-a UFS_app][-c build_config][-d][-f][-h][-j n][-v][-w] Execute all build scripts with -v option to turn on verbose where supported -w: Use structured wave grid + -y: + Use hydrostatic version of FV3 EOF exit 1 } @@ -51,11 +53,12 @@ _build_gsi="NO" _build_debug="" _verbose_opt="" _wave_opt="" +_hydro_opt="" _build_job_max=20 _quick_kill="NO" # Reset option counter in case this script is sourced OPTIND=1 -while getopts ":a:dfghj:kuvw" option; do +while getopts ":a:dfghj:kuvwy" option; do case "${option}" in a) _build_ufs_opt+="-a ${OPTARG} ";; f) _build_ufs_opt+="-f ";; @@ -67,6 +70,7 @@ while getopts ":a:dfghj:kuvw" option; do u) _build_ufsda="YES" ;; v) _verbose_opt="-v";; w) _wave_opt="-w";; + y) _hydro_opt="-y";; :) echo "[${BASH_SOURCE[0]}]: ${option} requires an argument" _usage @@ -129,7 +133,7 @@ declare -A build_opts big_jobs=0 build_jobs["ufs"]=8 big_jobs=$((big_jobs+1)) -build_opts["ufs"]="${_wave_opt} ${_verbose_opt} ${_build_ufs_opt} ${_build_debug}" +build_opts["ufs"]="${_wave_opt} ${_hydro_opt} ${_verbose_opt} ${_build_ufs_opt} ${_build_debug}" build_jobs["upp"]=1 build_opts["upp"]="${_build_debug}" diff --git a/sorc/build_ufs.sh b/sorc/build_ufs.sh index 44c8c7a2ad..6432962a5a 100755 --- a/sorc/build_ufs.sh +++ b/sorc/build_ufs.sh @@ -7,8 +7,9 @@ cwd=$(pwd) APP="S2SWA" CCPP_SUITES="FV3_GFS_v17_p8_ugwpv1,FV3_GFS_v17_coupled_p8_ugwpv1,FV3_global_nest_v1" # TODO: does the g-w need to build with all these CCPP_SUITES? PDLIB="ON" +HYDRO="OFF" -while getopts ":da:fj:vw" option; do +while getopts ":da:fj:vwy" option; do case "${option}" in d) BUILD_TYPE="Debug";; a) APP="${OPTARG}";; @@ -16,6 +17,7 @@ while getopts ":da:fj:vw" option; do j) BUILD_JOBS="${OPTARG}";; v) export BUILD_VERBOSE="YES";; w) PDLIB="OFF";; + y) HYDRO="ON";; :) echo "[${BASH_SOURCE[0]}]: ${option} requires an argument" ;; @@ -32,6 +34,7 @@ source "./tests/module-setup.sh" MAKE_OPT="-DAPP=${APP} -D32BIT=ON -DCCPP_SUITES=${CCPP_SUITES}" [[ ${PDLIB:-"OFF"} = "ON" ]] && MAKE_OPT+=" -DPDLIB=ON" +[[ ${HYDRO:-"OFF"} = "ON" ]] && MAKE_OPT+=" -DHYDRO=ON" if [[ ${BUILD_TYPE:-"Release"} = "DEBUG" ]] ; then MAKE_OPT+=" -DDEBUG=ON" elif [[ "${FASTER:-OFF}" == ON ]] ; then diff --git a/sorc/link_workflow.sh b/sorc/link_workflow.sh index 3d81f7b7d4..b35b7ff35a 100755 --- a/sorc/link_workflow.sh +++ b/sorc/link_workflow.sh @@ -148,7 +148,7 @@ for file in params_grib2_tbl_new nam_micro_lookup.dat do ${LINK_OR_COPY} "${HOMEgfs}/sorc/upp.fd/parm/${file}" . done -for dir in gfs gefs +for dir in gfs gefs sfs do ${LINK_OR_COPY} "${HOMEgfs}/sorc/upp.fd/parm/${dir}" . done diff --git a/ush/forecast_det.sh b/ush/forecast_det.sh index 72064ac7f5..6d321aa620 100755 --- a/ush/forecast_det.sh +++ b/ush/forecast_det.sh @@ -82,6 +82,10 @@ UFS_det(){ # TODO: add checks for other MOM6 restarts as well mom6_rst_ok="NO" fi + MOM6_RESTART_SETTING='r' + MOM6_INIT_FROM_Z=True + MOM6_WARMSTART_FILE="none" + MOM6_INIT_UV="zero" fi # Check for CICE6 restart availability diff --git a/ush/forecast_predet.sh b/ush/forecast_predet.sh index 7ffbd699a9..94965f4e97 100755 --- a/ush/forecast_predet.sh +++ b/ush/forecast_predet.sh @@ -332,9 +332,11 @@ FV3_predet(){ if [[ "${TYPE}" == "nh" ]]; then # monotonic and non-hydrostatic hord_mt=${hord_mt_nh_mono:-"10"} hord_xx=${hord_xx_nh_mono:-"10"} + hord_dp=-${hord_xx_nh_nonmono:-"-10"} else # monotonic and hydrostatic hord_mt=${hord_mt_hydro_mono:-"10"} hord_xx=${hord_xx_hydro_mono:-"10"} + hord_dp=-${hord_xx_nh_nonmono:-"-10"} fi else # non-monotonic options d_con=${d_con_nonmono:-"1."} @@ -342,9 +344,15 @@ FV3_predet(){ if [[ "${TYPE}" == "nh" ]]; then # non-monotonic and non-hydrostatic hord_mt=${hord_mt_nh_nonmono:-"5"} hord_xx=${hord_xx_nh_nonmono:-"5"} + hord_dp=${hord_xx_hydro_mono:-"-5"} else # non-monotonic and hydrostatic hord_mt=${hord_mt_hydro_nonmono:-"10"} hord_xx=${hord_xx_hydro_nonmono:-"10"} + hord_dp=${hord_xx_hydro_mono:-"10"} + kord_tm=${kord_tm_hydro_mono:-"-12"} + kord_mt=${kord_mt_hydro_mono:-"12"} + kord_wz=${kord_wz_hydro_mono:-"12"} + kord_tr=${kord_tr_hydro_mono:-"12"} fi fi @@ -543,9 +551,12 @@ FV3_predet(){ if [[ "${RUN}" =~ "gdas" || "${RUN}" =~ "gfs" ]]; then # RUN = gdas | enkfgdas | gfs | enkfgfs ${NCP} "${PARMgfs}/post/gfs/postxconfig-NT-gfs-two.txt" "${DATA}/postxconfig-NT.txt" ${NCP} "${PARMgfs}/post/gfs/postxconfig-NT-gfs-f00-two.txt" "${DATA}/postxconfig-NT_FH00.txt" - elif [[ "${RUN}" == "gefs" ]]; then # RUN = gefs + elif [[ "${RUN}" == "gefs" && "${SFS_POST:-NO}" == "NO" ]]; then # RUN = gefs ${NCP} "${PARMgfs}/post/gefs/postxconfig-NT-gefs.txt" "${DATA}/postxconfig-NT.txt" ${NCP} "${PARMgfs}/post/gefs/postxconfig-NT-gefs-f00.txt" "${DATA}/postxconfig-NT_FH00.txt" + elif [[ "${RUN}" == "gefs" && "${SFS_POST:-NO}" == "YES" ]]; then # RUN = sfs output + ${NCP} "${PARMgfs}/post/sfs/postxconfig-NT-sfs.txt" "${DATA}/postxconfig-NT.txt" + ${NCP} "${PARMgfs}/post/sfs/postxconfig-NT-sfs.txt" "${DATA}/postxconfig-NT_FH00.txt" fi fi } diff --git a/ush/parsing_namelists_FV3.sh b/ush/parsing_namelists_FV3.sh index 617ecff719..9279b284f8 100755 --- a/ush/parsing_namelists_FV3.sh +++ b/ush/parsing_namelists_FV3.sh @@ -163,7 +163,7 @@ cat > input.nml < dict: + # Given an input dict_in of the form + # {defaults: {config_name: {var1: value1, ...}, }, config_name: {var1: value1, ...}} + # Replace values in ['defaults']['config_name']['var1'] with ['config_name']['var1'] + # and return the ['defaults'] subdictionary as its own new dictionary. defaults = dict_in.pop('defaults', AttrDict()) + if 'defaults' in defaults: + _update_defaults(defaults) defaults.update(dict_in) return defaults - # Read in the YAML file to fill out templates and override host defaults + # Convert the inputs to an AttrDict data = AttrDict(host.info, **inputs.__dict__) + + # Read in the YAML file to fill out templates data.HOMEgfs = _top yaml_path = inputs.yaml if not os.path.exists(yaml_path): - raise IOError(f'YAML file does not exist, check path:' + yaml_path) - yaml_dict = _update_defaults(AttrDict(parse_j2yaml(yaml_path, data))) + raise FileNotFoundError(f'YAML file does not exist, check path: {yaml_path}') + yaml_dict = parse_j2yaml(yaml_path, data) + + # yaml_dict is in the form {defaults: {key1: val1, ...}, base: {key1: val1, ...}, ...} + # _update_defaults replaces any keys/values in defaults with matching keys in base + yaml_dict = _update_defaults(yaml_dict) + # Override the YAML defaults with the host-specific capabilities # First update config.base edit_baseconfig(host, inputs, yaml_dict) @@ -73,7 +85,7 @@ def _update_defaults(dict_in: dict) -> dict: stage_dict = dict(stage_dict, **host_dict) stage_input = f'{inputs.configdir}/config.stage_ic' stage_output = f'{inputs.expdir}/{inputs.pslot}/config.stage_ic' - edit_config(stage_input, stage_output, stage_dict) + edit_config(stage_input, stage_output, host_dict, stage_dict) # Loop over other configs and update them with defaults for cfg in yaml_dict.keys(): @@ -81,7 +93,7 @@ def _update_defaults(dict_in: dict) -> dict: continue cfg_file = f'{inputs.expdir}/{inputs.pslot}/config.{cfg}' cfg_dict = get_template_dict(yaml_dict[cfg]) - edit_config(cfg_file, cfg_file, cfg_dict) + edit_config(cfg_file, cfg_file, host_dict, cfg_dict) return @@ -92,20 +104,19 @@ def edit_baseconfig(host, inputs, yaml_dict): to `EXPDIR/pslot/config.base` """ - tmpl_dict = { + # Create base_dict which holds templated variables to be written to config.base + base_dict = { "@HOMEgfs@": _top, "@MACHINE@": host.machine.upper()} - # Replace host related items - extend_dict = get_template_dict(host.info) - tmpl_dict = dict(tmpl_dict, **extend_dict) - if inputs.start in ["warm"]: is_warm_start = ".true." elif inputs.start in ["cold"]: is_warm_start = ".false." + else: + raise ValueError(f"Invalid start type: {inputs.start}") - extend_dict = dict() + # Construct a dictionary from user inputs extend_dict = { "@PSLOT@": inputs.pslot, "@SDATE@": datetime_to_YMDH(inputs.idate), @@ -121,35 +132,37 @@ def edit_baseconfig(host, inputs, yaml_dict): "@APP@": inputs.app, "@NMEM_ENS@": getattr(inputs, 'nens', 0) } - tmpl_dict = dict(tmpl_dict, **extend_dict) - extend_dict = dict() if getattr(inputs, 'nens', 0) > 0: - extend_dict = { - "@CASEENS@": f'C{inputs.resensatmos}', - } - tmpl_dict = dict(tmpl_dict, **extend_dict) + extend_dict['@CASEENS@'] = f'C{inputs.resensatmos}' - extend_dict = dict() if inputs.mode in ['cycled']: - extend_dict = { - "@DOHYBVAR@": "YES" if inputs.nens > 0 else "NO", - } - tmpl_dict = dict(tmpl_dict, **extend_dict) + extend_dict["@DOHYBVAR@"] = "YES" if inputs.nens > 0 else "NO" - try: - tmpl_dict = dict(tmpl_dict, **get_template_dict(yaml_dict['base'])) - except KeyError: - pass + # Further extend/redefine base_dict with extend_dict + base_dict = dict(base_dict, **extend_dict) + + # Add/override 'base'-specific declarations in base_dict + if 'base' in yaml_dict: + base_dict = dict(base_dict, **get_template_dict(yaml_dict['base'])) base_input = f'{inputs.configdir}/config.base' base_output = f'{inputs.expdir}/{inputs.pslot}/config.base' - edit_config(base_input, base_output, tmpl_dict) + edit_config(base_input, base_output, host.info, base_dict) return -def edit_config(input_config, output_config, config_dict): +def edit_config(input_config, output_config, host_info, config_dict): + """ + Given a templated input_config filename, parse it based on config_dict and + host_info and write it out to the output_config filename. + """ + + # Override defaults with machine-specific capabilties + # e.g. some machines are not able to run metp jobs + host_dict = get_template_dict(host_info) + config_dict = dict(config_dict, **host_dict) # Read input config with open(input_config, 'rt') as fi: @@ -173,9 +186,17 @@ def edit_config(input_config, output_config, config_dict): def get_template_dict(input_dict): + # Reads a templated input dictionary and updates the output + output_dict = dict() + for key, value in input_dict.items(): - output_dict[f'@{key}@'] = value + # In some cases, the same config may be templated twice + # Prevent adding additional "@"s + if "@" in key: + output_dict[f'{key}'] = value + else: + output_dict[f'@{key}@'] = value return output_dict @@ -350,6 +371,7 @@ def query_and_clean(dirname, force_clean=False): def validate_user_request(host, inputs): supp_res = host.info['SUPPORTED_RESOLUTIONS'] + supp_waves = host.info.get('SUPPORT_WAVES', 'YES') machine = host.machine for attr in ['resdetatmos', 'resensatmos']: try: @@ -359,6 +381,9 @@ def validate_user_request(host, inputs): if expt_res not in supp_res: raise NotImplementedError(f"Supported resolutions on {machine} are:\n{', '.join(supp_res)}") + if "W" in inputs.app and supp_waves == "NO": + raise NotImplementedError(f"Waves are not supported on {machine}") + def get_ocean_resolution(resdetatmos): """ @@ -397,7 +422,7 @@ def main(*argv): if create_expdir: makedirs_if_missing(expdir) - fill_EXPDIR(user_inputs) + fill_expdir(user_inputs) update_configs(host, user_inputs) print(f"*" * 100)