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Ordering error in setup file creation #64

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johandahlberg opened this issue May 13, 2015 · 0 comments
Open

Ordering error in setup file creation #64

johandahlberg opened this issue May 13, 2015 · 0 comments
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@johandahlberg
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When creating a setup file Piper can add R1 and R2 in an arbitrary order (no matter the sort order of the input). This can screw things up strand-specific applications. This could either be resolved by fixing the setupFileCreator, or by checking the ordering in the SetupXMLReader.
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@johandahlberg