Non-zero exit code MS Fragger

[talithar-star]

- Upload your log file
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the zipped file by drag & drop here.)
log_2025-01-09_10-28-26.zip

- Describe the issue or question:

Process 'PhilosopherFilter' finished, exit code: 2
Process returned non-zero exit code, stopping