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org/neuroml/model/class-use/IFCurrExp.html create mode 100644 org/neuroml/model/class-use/IafCell.html create mode 100644 org/neuroml/model/class-use/IafRefCell.html create mode 100644 org/neuroml/model/class-use/IafTauCell.html create mode 100644 org/neuroml/model/class-use/IafTauRefCell.html create mode 100644 org/neuroml/model/class-use/Include.html create mode 100644 org/neuroml/model/class-use/IncludeType.html create mode 100644 org/neuroml/model/class-use/InhomogeneousParameter.html create mode 100644 org/neuroml/model/class-use/InhomogeneousValue.html create mode 100644 org/neuroml/model/class-use/InitMembPotential.html create mode 100644 org/neuroml/model/class-use/Input.html create mode 100644 org/neuroml/model/class-use/InputList.html create mode 100644 org/neuroml/model/class-use/InputW.html create mode 100644 org/neuroml/model/class-use/Instance.html create mode 100644 org/neuroml/model/class-use/InstanceRequirement.html create mode 100644 org/neuroml/model/class-use/IntracellularProperties.html create mode 100644 org/neuroml/model/class-use/IntracellularProperties2CaPools.html create mode 100644 org/neuroml/model/class-use/IonChannel.html create mode 100644 org/neuroml/model/class-use/IonChannelHH.html create mode 100644 org/neuroml/model/class-use/IonChannelKS.html create mode 100644 org/neuroml/model/class-use/IonChannelScalable.html create mode 100644 org/neuroml/model/class-use/IonChannelVShift.html create mode 100644 org/neuroml/model/class-use/Izhikevich2007Cell.html create mode 100644 org/neuroml/model/class-use/IzhikevichCell.html create mode 100644 org/neuroml/model/class-use/LEMSProperty.html create mode 100644 org/neuroml/model/class-use/Layout.html create mode 100644 org/neuroml/model/class-use/LinearGradedSynapse.html create mode 100644 org/neuroml/model/class-use/Location.html create mode 100644 org/neuroml/model/class-use/Member.html create mode 100644 org/neuroml/model/class-use/MembraneProperties.html create mode 100644 org/neuroml/model/class-use/MembraneProperties2CaPools.html create mode 100644 org/neuroml/model/class-use/Metric.html create mode 100644 org/neuroml/model/class-use/Morphology.html create mode 100644 org/neuroml/model/class-use/NamedDimensionalType.html create mode 100644 org/neuroml/model/class-use/NamedDimensionalVariable.html create mode 100644 org/neuroml/model/class-use/Network.html create mode 100644 org/neuroml/model/class-use/NetworkTypes.html create mode 100644 org/neuroml/model/class-use/NeuroMLDocument.html create mode 100644 org/neuroml/model/class-use/ObjectFactory.html create mode 100644 org/neuroml/model/class-use/OnCondition.html create mode 100644 org/neuroml/model/class-use/OnEntry.html create mode 100644 org/neuroml/model/class-use/OnEvent.html create mode 100644 org/neuroml/model/class-use/OnStart.html create mode 100644 org/neuroml/model/class-use/OpenState.html create mode 100644 org/neuroml/model/class-use/Parameter.html create mode 100644 org/neuroml/model/class-use/Path.html create mode 100644 org/neuroml/model/class-use/PinskyRinzelCA3Cell.html create mode 100644 org/neuroml/model/class-use/PlasticityMechanism.html create mode 100644 org/neuroml/model/class-use/PlasticityTypes.html create mode 100644 org/neuroml/model/class-use/Point3DWithDiam.html create mode 100644 org/neuroml/model/class-use/PoissonFiringSynapse.html create mode 100644 org/neuroml/model/class-use/Population.html create mode 100644 org/neuroml/model/class-use/PopulationTypes.html create mode 100644 org/neuroml/model/class-use/Projection.html create mode 100644 org/neuroml/model/class-use/Property.html create mode 100644 org/neuroml/model/class-use/ProximalDetails.html create mode 100644 org/neuroml/model/class-use/PulseGenerator.html create mode 100644 org/neuroml/model/class-use/PulseGeneratorDL.html create mode 100644 org/neuroml/model/class-use/Q10ConductanceScaling.html create mode 100644 org/neuroml/model/class-use/Q10Settings.html create mode 100644 org/neuroml/model/class-use/RampGenerator.html create mode 100644 org/neuroml/model/class-use/RampGeneratorDL.html create mode 100644 org/neuroml/model/class-use/RandomLayout.html create mode 100644 org/neuroml/model/class-use/ReactionScheme.html create mode 100644 org/neuroml/model/class-use/Regime.html create mode 100644 org/neuroml/model/class-use/Region.html create mode 100644 org/neuroml/model/class-use/Requirement.html create mode 100644 org/neuroml/model/class-use/Resistivity.html create mode 100644 org/neuroml/model/class-use/ReverseTransition.html create mode 100644 org/neuroml/model/class-use/Segment.html create mode 100644 org/neuroml/model/class-use/SegmentEndPoint.html create mode 100644 org/neuroml/model/class-use/SegmentGroup.html create mode 100644 org/neuroml/model/class-use/SegmentParent.html create mode 100644 org/neuroml/model/class-use/SilentSynapse.html create mode 100644 org/neuroml/model/class-use/SineGenerator.html create mode 100644 org/neuroml/model/class-use/SineGeneratorDL.html create mode 100644 org/neuroml/model/class-use/Space.html create mode 100644 org/neuroml/model/class-use/SpaceStructure.html create mode 100644 org/neuroml/model/class-use/Species.html create mode 100644 org/neuroml/model/class-use/SpecificCapacitance.html create mode 100644 org/neuroml/model/class-use/Spike.html create mode 100644 org/neuroml/model/class-use/SpikeArray.html create mode 100644 org/neuroml/model/class-use/SpikeGenerator.html create mode 100644 org/neuroml/model/class-use/SpikeGeneratorPoisson.html create mode 100644 org/neuroml/model/class-use/SpikeGeneratorRandom.html create mode 100644 org/neuroml/model/class-use/SpikeGeneratorRefPoisson.html create mode 100644 org/neuroml/model/class-use/SpikeSourcePoisson.html create mode 100644 org/neuroml/model/class-use/SpikeThresh.html create mode 100644 org/neuroml/model/class-use/Standalone.html create mode 100644 org/neuroml/model/class-use/StateAssignment.html create mode 100644 org/neuroml/model/class-use/StateVariable.html create mode 100644 org/neuroml/model/class-use/SubTree.html create mode 100644 org/neuroml/model/class-use/SynapticConnection.html create mode 100644 org/neuroml/model/class-use/TauInfTransition.html create mode 100644 org/neuroml/model/class-use/TimeDerivative.html create mode 100644 org/neuroml/model/class-use/TimedSynapticInput.html create mode 100644 org/neuroml/model/class-use/TransientPoissonFiringSynapse.html create mode 100644 org/neuroml/model/class-use/Transition.html create mode 100644 org/neuroml/model/class-use/TrueOrFalse.html create mode 100644 org/neuroml/model/class-use/UnstructuredLayout.html create mode 100644 org/neuroml/model/class-use/VariableParameter.html create mode 100644 org/neuroml/model/class-use/VoltageClamp.html create mode 100644 org/neuroml/model/class-use/VoltageClampTriple.html create mode 100644 org/neuroml/model/package-summary.html create mode 100644 org/neuroml/model/package-tree.html create mode 100644 org/neuroml/model/package-use.html create mode 100644 org/neuroml/model/util/CellUtils.html create mode 100644 org/neuroml/model/util/NeuroML2Validator.html create mode 100644 org/neuroml/model/util/NeuroMLConverter.html create mode 100644 org/neuroml/model/util/NeuroMLElements.html create mode 100644 org/neuroml/model/util/NeuroMLException.html create mode 100644 org/neuroml/model/util/NeuroMLNamespacePrefixMapper.html create mode 100644 org/neuroml/model/util/StandardTest.LEVEL.html create mode 100644 org/neuroml/model/util/StandardTest.html create mode 100644 org/neuroml/model/util/UnitsFormatterUtils.html create mode 100644 org/neuroml/model/util/class-use/CellUtils.html create mode 100644 org/neuroml/model/util/class-use/NeuroML2Validator.html create mode 100644 org/neuroml/model/util/class-use/NeuroMLConverter.html create mode 100644 org/neuroml/model/util/class-use/NeuroMLElements.html create mode 100644 org/neuroml/model/util/class-use/NeuroMLException.html create mode 100644 org/neuroml/model/util/class-use/NeuroMLNamespacePrefixMapper.html create mode 100644 org/neuroml/model/util/class-use/StandardTest.LEVEL.html create mode 100644 org/neuroml/model/util/class-use/StandardTest.html create mode 100644 org/neuroml/model/util/class-use/UnitsFormatterUtils.html create mode 100644 org/neuroml/model/util/hdf5/Hdf5Exception.html create mode 100644 org/neuroml/model/util/hdf5/Hdf5Utils.html create mode 100644 org/neuroml/model/util/hdf5/NetworkHelper.html create mode 100644 org/neuroml/model/util/hdf5/NeuroMLHDF5Reader.html create mode 100644 org/neuroml/model/util/hdf5/NeuroMLHDF5Writer.html create mode 100644 org/neuroml/model/util/hdf5/class-use/Hdf5Exception.html create mode 100644 org/neuroml/model/util/hdf5/class-use/Hdf5Utils.html create mode 100644 org/neuroml/model/util/hdf5/class-use/NetworkHelper.html create mode 100644 org/neuroml/model/util/hdf5/class-use/NeuroMLHDF5Reader.html create mode 100644 org/neuroml/model/util/hdf5/class-use/NeuroMLHDF5Writer.html create mode 100644 org/neuroml/model/util/hdf5/package-summary.html create mode 100644 org/neuroml/model/util/hdf5/package-tree.html create mode 100644 org/neuroml/model/util/hdf5/package-use.html create mode 100644 org/neuroml/model/util/package-summary.html create mode 100644 org/neuroml/model/util/package-tree.html create mode 100644 org/neuroml/model/util/package-use.html create mode 100644 overview-summary.html create mode 100644 overview-tree.html create mode 100644 package-search-index.js create mode 100644 resources/glass.png create mode 100644 resources/x.png create mode 100644 script-dir/jquery-3.6.1.min.js create mode 100644 script-dir/jquery-ui.min.css create mode 100644 script-dir/jquery-ui.min.js create mode 100644 script.js create mode 100644 search.js create mode 100644 serialized-form.html create mode 100644 stylesheet.css create mode 100644 tag-search-index.js create mode 100644 type-search-index.js diff --git a/.nojekyll b/.nojekyll new file mode 100644 index 00000000..e69de29b diff --git a/allclasses-index.html b/allclasses-index.html new file mode 100644 index 00000000..6a83c4a7 --- /dev/null +++ b/allclasses-index.html @@ -0,0 +1,1371 @@ + + + + +All Classes and Interfaces (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
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All Classes and Interfaces

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Class
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Description
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Adapter1
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Adapter2
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AdExIaFCell
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Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
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AllowedSpaces
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+
Java class for allowedSpaces.
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+
AlphaCondSynapse
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Alpha synapse: rise time and decay time are both tau_syn.
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AlphaCurrentSynapse
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Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current
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AlphaCurrSynapse
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Alpha synapse: rise time and decay time are both tau_syn.
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AlphaSynapse
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Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
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Annotation
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A structured annotation containing metadata, specifically RDF or **property** elements
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Base
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Anything which can have a unique (within its parent) id of the form NmlId (spaceless combination of letters, numbers and underscore).
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BaseCell
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Base type of any cell ( e.
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BaseCellMembPotCap
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Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance
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BaseConductanceBasedSynapse
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Synapse model which exposes a conductance **g** in addition to producing a current.
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BaseConductanceBasedSynapseTwo
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Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
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BaseConnection
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Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
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BaseConnectionNewFormat
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Base of all synaptic connections with preCell, postSegment, etc.
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BaseConnectionOldFormat
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Base of all synaptic connections with preCellId, postSegmentId, etc.
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BaseCurrentBasedSynapse
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Synapse model which produces a synaptic current.
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BaseNonNegativeIntegerId
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Anything which can have a unique (within its parent) id, which must be an integer zero or greater.
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BaseProjection
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Base for projection (set of synaptic connections) between two populations
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BasePyNNCell
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Base type of any PyNN standard cell model.
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BasePyNNIaFCell
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Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
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BasePyNNIaFCondCell
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Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
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BasePynnSynapse
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Base type for all PyNN synapses.
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BaseSynapse
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Base type for all synapses, i.
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BaseVoltageDepSynapse
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Base type for synapses with a dependence on membrane potential
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BaseWithoutId
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Base element without ID specified *yet*, e.g.
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BiophysicalProperties
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The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
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BiophysicalProperties2CaPools
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The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
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BlockingPlasticSynapse
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Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
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BlockMechanism
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Java class for BlockMechanism complex type.
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BlockTypes
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Java class for BlockTypes.
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Case
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Java class for Case complex type.
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Cell
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Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
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Cell2CaPools
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Variant of cell with two independent Ca2+ pools.
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CellSet
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Java class for CellSet complex type.
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CellUtils
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ChannelDensity
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Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** + \n + :param erev: The reversal potential of the current produced + :type erev: voltage + :param condDensity: + :type condDensity: conductanceDensity
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ChannelDensityGHK
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Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation.
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ChannelDensityGHK2
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Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al.
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ChannelDensityNernst
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Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation.
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ChannelDensityNernstCa2
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This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ).
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ChannelDensityNonUniform
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Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** .
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ChannelDensityNonUniformGHK
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Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation.
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ChannelDensityNonUniformNernst
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Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation.
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ChannelDensityVShift
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Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates.
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ChannelPopulation
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Population of a **number** of ohmic ion channels.
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ChannelTypes
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Java class for channelTypes.
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ClosedState
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A **KSState** with **relativeConductance** of 0 + \n + :param relativeConductance: + :type relativeConductance: none
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ComponentType
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Contains an extension to NeuroML by creating custom LEMS ComponentType.
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CompoundInput
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Generates a current which is the sum of all its child **basePointCurrent** element, e.
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CompoundInputDL
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Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
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ConcentrationModelD
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Java class for ConcentrationModel_D complex type.
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ConditionalDerivedVariable
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Java class for ConditionalDerivedVariable complex type.
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Connection
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Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component.
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ConnectionWD
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Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection + \n + :param weight: + :type weight: none + :param delay: + :type delay: time
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Constant
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LEMS ComponentType for Constant.
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ContinuousConnection
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An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
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ContinuousConnectionInstance
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An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
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ContinuousConnectionInstanceW
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An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
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ContinuousProjection
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A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** .
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DecayingPoolConcentrationModel
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+
Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param shellThickness: + :type shellThickness: length
+
+
DerivedParameter
+
+
LEMS DerivedParamter element
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+
DerivedVariable
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+
LEMS ComponentType for DerivedVariable
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+
DistalDetails
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+
What to do at the distal point when creating an inhomogeneous parameter
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DoubleSynapse
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Synapse consisting of two independent synaptic mechanisms ( e.
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+
Dynamics
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+
LEMS ComponentType for Dynamics
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+
EIFCondAlphaIsfaIsta
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+
Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
EIFCondExpIsfaIsta
+
+
Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
ElectricalConnection
+
+
To enable connections between populations through gap junctions.
+
+
ElectricalConnectionInstance
+
+
To enable connections between populations through gap junctions.
+
+
ElectricalConnectionInstanceW
+
+
To enable connections between populations through gap junctions.
+
+
ElectricalProjection
+
+
A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions.
+
+
EventOut
+
+
Java class for EventOut complex type.
+
+
ExpCondSynapse
+
+
Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none
+
+
ExpCurrSynapse
+
+
Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none
+
+
ExplicitInput
+
+
An explicit input ( anything which extends **basePointCurrent** ) to a target cell in a population
+
+
ExpOneSynapse
+
+
Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
+
+
Exposure
+
+
LEMS Exposure (ComponentType property)
+
+
ExpThreeSynapse
+
+
Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
+
+
ExpTwoSynapse
+
+
Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
+
+
ExtracellularProperties
+
+
Java class for ExtracellularProperties complex type.
+
+
ExtracellularPropertiesLocal
+
+
Java class for ExtracellularPropertiesLocal complex type.
+
+
FitzHughNagumo1969Cell
+
+
The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
+
+
FitzHughNagumoCell
+
+
Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
+
+
FixedFactorConcentrationModel
+
+
Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
+
+
ForwardTransition
+
+
A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
+
+
GapJunction
+
+
Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance
+
+
GateFractional
+
+
Gate composed of subgates contributing with fractional conductance + \n + :param instances: + :type instances: none
+
+
GateFractionalSubgate
+
+
Java class for GateFractionalSubgate complex type.
+
+
GateHHInstantaneous
+
+
Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value + \n + :param instances: + :type instances: none
+
+
GateHHRates
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHRatesInf
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHRatesTau
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHRatesTauInf
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHTauInf
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHUndetermined
+
+
Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc.
+
+
GateKS
+
+
A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param instances: + :type instances: none
+
+
GateTypes
+
+
Java class for gateTypes.
+
+
GradedSynapse
+
+
Graded/analog synapse.
+
+
GridLayout
+
+
Java class for GridLayout complex type.
+
+
Hdf5Exception
+
 
+
Hdf5Utils
+
 
+
HHCondExp
+
+
Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
+
+
HHRate
+
+
Java class for HHRate complex type.
+
+
HHTime
+
+
Java class for HHTime complex type.
+
+
HHVariable
+
+
Java class for HHVariable complex type.
+
+
HindmarshRose1984Cell
+
+
The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
+
+
IafCell
+
+
Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
+
+
IafRefCell
+
+
Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
+
+
IafTauCell
+
+
Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
+
+
IafTauRefCell
+
+
Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
+
+
IFCondAlpha
+
+
Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
IFCondExp
+
+
Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
IFCurrAlpha
+
+
Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
IFCurrExp
+
+
Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
Include
+
+
Include all members of another **segmentGroup** in this group
+
+
IncludeType
+
+
Java class for IncludeType complex type.
+
+
InhomogeneousParameter
+
+
An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ).
+
+
InhomogeneousValue
+
+
Specifies the **value** of an **inhomogeneousParameter.** For usage see **variableParameter**
+
+
InitMembPotential
+
+
Explicitly set initial membrane potential for the cell + \n + :param value: + :type value: voltage
+
+
Input
+
+
Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
+
+
InputList
+
+
An explicit list of **input** s to a **population.**
+
+
InputW
+
+
Specifies input lists.
+
+
Instance
+
+
Specifies a single instance of a component in a **population** ( placed at **location** ).
+
+
InstanceRequirement
+
+
Java class for InstanceRequirement complex type.
+
+
IntracellularProperties
+
+
Biophysical properties related to the intracellular space within the **cell** , such as the **resistivity** and the list of ionic **species** present.
+
+
IntracellularProperties2CaPools
+
+
Variant of intracellularProperties with 2 independent Ca pools
+
+
IonChannel
+
+
Note **ionChannel** and **ionChannelHH** are currently functionally identical.
+
+
IonChannelHH
+
+
Note **ionChannel** and **ionChannelHH** are currently functionally identical.
+
+
IonChannelKS
+
+
A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param conductance: + :type conductance: conductance
+
+
IonChannelScalable
+
+
Java class for IonChannelScalable complex type.
+
+
IonChannelVShift
+
+
Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
+
+
Izhikevich2007Cell
+
+
Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
+
+
IzhikevichCell
+
+
Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage
+
+
Layout
+
+
Java class for Layout complex type.
+
+
LEMSProperty
+
+
Java class for LEMS_Property complex type.
+
+
LinearGradedSynapse
+
+
Behaves just like a one way gap junction.
+
+
Location
+
+
Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** + \n + :param x: + :type x: none + :param y: + :type y: none + :param z: + :type z: none
+
+
Member
+
+
A single identified **segment** which is part of the **segmentGroup**
+
+
MembraneProperties
+
+
Properties specific to the membrane, such as the **populations** of channels, **channelDensities,** **specificCapacitance,** etc.
+
+
MembraneProperties2CaPools
+
+
Variant of membraneProperties with 2 independent Ca pools
+
+
Metric
+
+
Java class for Metric.
+
+
Morphology
+
+
The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
+
+
NamedDimensionalType
+
+
Java class for NamedDimensionalType complex type.
+
+
NamedDimensionalVariable
+
+
Java class for NamedDimensionalVariable complex type.
+
+
Network
+
+
Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
+
+
NetworkHelper
+
 
+
NetworkTypes
+
+
Java class for networkTypes.
+
+
NeuroML2Validator
+
 
+
NeuroMLConverter
+
 
+
NeuroMLDocument
+
+
Java class for NeuroMLDocument complex type.
+
+
NeuroMLElements
+
 
+
NeuroMLException
+
 
+
NeuroMLHDF5Reader
+
 
+
NeuroMLHDF5Writer
+
 
+
NeuroMLNamespacePrefixMapper
+
 
+
ObjectFactory
+
+
This object contains factory methods for each + Java content interface and Java element interface + generated in the org.neuroml.model package.
+
+
OnCondition
+
+
Java class for OnCondition complex type.
+
+
OnEntry
+
+
Java class for OnEntry complex type.
+
+
OnEvent
+
+
Java class for OnEvent complex type.
+
+
OnStart
+
+
Java class for OnStart complex type.
+
+
OpenState
+
+
A **KSState** with **relativeConductance** of 1 + \n + :param relativeConductance: + :type relativeConductance: none
+
+
Parameter
+
+
Java class for Parameter complex type.
+
+
Path
+
+
Include all the **segment** s between those specified by **from** and **to** , inclusive
+
+
PinskyRinzelCA3Cell
+
+
Reduced CA3 cell model from Pinsky, P.
+
+
PlasticityMechanism
+
+
Java class for PlasticityMechanism complex type.
+
+
PlasticityTypes
+
+
Java class for PlasticityTypes.
+
+
Point3DWithDiam
+
+
Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ).
+
+
PoissonFiringSynapse
+
+
Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
+
+
Population
+
+
A population of components, with just one parameter for the **size,** i.
+
+
PopulationTypes
+
+
Java class for populationTypes.
+
+
Projection
+
+
Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements.
+
+
Property
+
+
A property ( a **tag** and **value** pair ), which can be on any **baseStandalone** either as a direct child, or within an **Annotation** .
+
+
ProximalDetails
+
+
What to do at the proximal point when creating an inhomogeneous parameter
+
+
PulseGenerator
+
+
Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
+
+
PulseGeneratorDL
+
+
Dimensionless equivalent of **pulseGenerator** .
+
+
Q10ConductanceScaling
+
+
A value for the conductance scaling which varies as a standard function of the difference between the current temperature, **temperature,** and the temperature at which the conductance was originally determined, **experimentalTemp** + \n + :param q10Factor: + :type q10Factor: none + :param experimentalTemp: + :type experimentalTemp: temperature
+
+
Q10Settings
+
+
Java class for Q10Settings complex type.
+
+
RampGenerator
+
+
Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
+
+
RampGeneratorDL
+
+
Dimensionless equivalent of **rampGenerator** .
+
+
RandomLayout
+
+
Java class for RandomLayout complex type.
+
+
ReactionScheme
+
+
Java class for ReactionScheme complex type.
+
+
Regime
+
+
Java class for Regime complex type.
+
+
Region
+
+
Initial attempt to specify 3D region for placing cells.
+
+
Requirement
+
+
Java class for Requirement complex type.
+
+
Resistivity
+
+
The resistivity, or specific axial resistance, of the cytoplasm + \n + :param value: + :type value: resistivity
+
+
ReverseTransition
+
+
A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
+
+
Segment
+
+
A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
+
+
SegmentEndPoint
+
+
Java class for SegmentEndPoint complex type.
+
+
SegmentGroup
+
+
A method to describe a group of **segment** s in a **morphology** , e.
+
+
SegmentParent
+
+
Java class for SegmentParent complex type.
+
+
SilentSynapse
+
+
Dummy synapse which emits no current.
+
+
SineGenerator
+
+
Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
+
+
SineGeneratorDL
+
+
Dimensionless equivalent of **sineGenerator** .
+
+
Space
+
+
Java class for Space complex type.
+
+
SpaceStructure
+
+
Java class for SpaceStructure complex type.
+
+
Species
+
+
Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration + \n + :param initialConcentration: + :type initialConcentration: concentration + :param initialExtConcentration: + :type initialExtConcentration: concentration
+
+
SpecificCapacitance
+
+
Capacitance per unit area + \n + :param value: + :type value: specificCapacitance
+
+
Spike
+
+
Emits a single spike at the specified **time** + \n + :param time: Time at which to emit one spike event + :type time: time
+
+
SpikeArray
+
+
Set of spike ComponentTypes, each emitting one spike at a certain time.
+
+
SpikeGenerator
+
+
Simple generator of spikes at a regular interval set by **period** + \n + :param period: Time between spikes.
+
+
SpikeGeneratorPoisson
+
+
Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
+
+
SpikeGeneratorRandom
+
+
Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** + \n + :param maxISI: Maximum interspike interval + :type maxISI: time + :param minISI: Minimum interspike interval + :type minISI: time
+
+
SpikeGeneratorRefPoisson
+
+
Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** + \n + :param minimumISI: The minimum interspike interval + :type minimumISI: time + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
+
+
SpikeSourcePoisson
+
+
Spike source, generating spikes according to a Poisson process.
+
+
SpikeThresh
+
+
Membrane potential at which to emit a spiking event.
+
+
Standalone
+
+
Elements which can stand alone and be referenced by id, e.g.
+
+
StandardTest
+
 
+
StandardTest.LEVEL
+
 
+
StateAssignment
+
+
Java class for StateAssignment complex type.
+
+
StateVariable
+
+
Java class for StateVariable complex type.
+
+
SubTree
+
+
Include all the **segment** s distal to that specified by **from** in the **segmentGroup**
+
+
SynapticConnection
+
+
Explicit event connection between named components, which gets processed via a new instance of a **synapse** component which is created on the target component
+
+
TauInfTransition
+
+
KS Transition specified in terms of time constant **tau** and steady state **inf**
+
+
TimeDerivative
+
+
Java class for TimeDerivative complex type.
+
+
TimedSynapticInput
+
+
Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
+
+
TransientPoissonFiringSynapse
+
+
Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
+
+
Transition
+
+
Java class for Transition complex type.
+
+
TrueOrFalse
+
+
Java class for TrueOrFalse.
+
+
UnitsFormatterUtils
+
 
+
UnstructuredLayout
+
+
Java class for UnstructuredLayout complex type.
+
+
VariableParameter
+
+
Specifies a **parameter** ( e.
+
+
VoltageClamp
+
+
Voltage clamp.
+
+
VoltageClampTriple
+
+
Voltage clamp with 3 clamp levels.
+
+
+
+
+
+ +
+
+ + diff --git a/allpackages-index.html b/allpackages-index.html new file mode 100644 index 00000000..5dd4cdc9 --- /dev/null +++ b/allpackages-index.html @@ -0,0 +1,73 @@ + + + + +All Packages (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

All Packages

+
+
Package Summary
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+ + diff --git a/constant-values.html b/constant-values.html new file mode 100644 index 00000000..f6ef719f --- /dev/null +++ b/constant-values.html @@ -0,0 +1,358 @@ + + + + +Constant Field Values (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Constant Field Values

+
+

Contents

+ +
+
+
+

org.neuroml.*

+ +
+
+ +
+
+ + diff --git a/element-list b/element-list new file mode 100644 index 00000000..4df62d34 --- /dev/null +++ b/element-list @@ -0,0 +1,3 @@ +org.neuroml.model +org.neuroml.model.util +org.neuroml.model.util.hdf5 diff --git a/help-doc.html b/help-doc.html new file mode 100644 index 00000000..4c55f91b --- /dev/null +++ b/help-doc.html @@ -0,0 +1,196 @@ + + + + +API Help (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+

JavaDoc Help

+ +
+
+

Navigation

+Starting from the Overview page, you can browse the documentation using the links in each page, and in the navigation bar at the top of each page. The Index and Search box allow you to navigate to specific declarations and summary pages, including: All Packages, All Classes and Interfaces + +
+
+
+

Kinds of Pages

+The following sections describe the different kinds of pages in this collection. +
+

Overview

+

The Overview page is the front page of this API document and provides a list of all packages with a summary for each. This page can also contain an overall description of the set of packages.

+
+
+

Package

+

Each package has a page that contains a list of its classes and interfaces, with a summary for each. These pages may contain the following categories:

+
    +
  • Interfaces
    • +
  • Classes
    • +
  • Enums
    • +
  • Exceptions
    • +
  • Errors
    • +
  • Annotation Types
    • +
+
+
+

Class or Interface

+

Each class, interface, nested class and nested interface has its own separate page. Each of these pages has three sections consisting of a declaration and description, member summary tables, and detailed member descriptions. Entries in each of these sections are omitted if they are empty or not applicable.

+
    +
  • Class Inheritance Diagram
    • +
  • Direct Subclasses
    • +
  • All Known Subinterfaces
    • +
  • All Known Implementing Classes
    • +
  • Class or Interface Declaration
    • +
  • Class or Interface Description
    • +
+
+
    +
  • Nested Class Summary
    • +
  • Enum Constant Summary
    • +
  • Field Summary
    • +
  • Property Summary
    • +
  • Constructor Summary
    • +
  • Method Summary
    • +
  • Required Element Summary
    • +
  • Optional Element Summary
    • +
+
+
    +
  • Enum Constant Details
    • +
  • Field Details
    • +
  • Property Details
    • +
  • Constructor Details
    • +
  • Method Details
    • +
  • Element Details
    • +
+

Note: Annotation interfaces have required and optional elements, but not methods. Only enum classes have enum constants. The components of a record class are displayed as part of the declaration of the record class. Properties are a feature of JavaFX.

+

The summary entries are alphabetical, while the detailed descriptions are in the order they appear in the source code. This preserves the logical groupings established by the programmer.

+
+
+

Other Files

+

Packages and modules may contain pages with additional information related to the declarations nearby.

+
+
+

Use

+

Each documented package, class and interface has its own Use page. This page describes what packages, classes, methods, constructors and fields use any part of the given class or package. Given a class or interface A, its Use page includes subclasses of A, fields declared as A, methods that return A, and methods and constructors with parameters of type A. You can access this page by first going to the package, class or interface, then clicking on the USE link in the navigation bar.

+
+
+

Tree (Class Hierarchy)

+

There is a Class Hierarchy page for all packages, plus a hierarchy for each package. Each hierarchy page contains a list of classes and a list of interfaces. Classes are organized by inheritance structure starting with java.lang.Object. Interfaces do not inherit from java.lang.Object.

+
    +
  • When viewing the Overview page, clicking on TREE displays the hierarchy for all packages.
    • +
  • When viewing a particular package, class or interface page, clicking on TREE displays the hierarchy for only that package.
    • +
+
+
+

Constant Field Values

+

The Constant Field Values page lists the static final fields and their values.

+
+
+

Serialized Form

+

Each serializable or externalizable class has a description of its serialization fields and methods. This information is of interest to those who implement rather than use the API. While there is no link in the navigation bar, you can get to this information by going to any serialized class and clicking "Serialized Form" in the "See Also" section of the class description.

+
+
+

All Packages

+

The All Packages page contains an alphabetic index of all packages contained in the documentation.

+
+
+

All Classes and Interfaces

+

The All Classes and Interfaces page contains an alphabetic index of all classes and interfaces contained in the documentation, including annotation interfaces, enum classes, and record classes.

+
+
+

Index

+

The Index contains an alphabetic index of all classes, interfaces, constructors, methods, and fields in the documentation, as well as summary pages such as All Packages, All Classes and Interfaces.

+
+
+
+This help file applies to API documentation generated by the standard doclet.
+ +
+
+ + diff --git a/index-all.html b/index-all.html new file mode 100644 index 00000000..b9fa0fae --- /dev/null +++ b/index-all.html @@ -0,0 +1,10642 @@ + + + + +Index (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Index

+
+A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ 
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form +

A

+
+
a - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
a - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
a - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
a - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
a - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
a - Variable in class org.neuroml.model.IzhikevichCell
+
 
+
active - Variable in class org.neuroml.model.VoltageClampTriple
+
 
+
Adapter1 - Class in org.neuroml.model
+
 
+
Adapter1() - Constructor for class org.neuroml.model.Adapter1
+
 
+
Adapter2 - Class in org.neuroml.model
+
 
+
Adapter2() - Constructor for class org.neuroml.model.Adapter2
+
 
+
addElementToDocument(NeuroMLDocument, Standalone) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
addStringAttribute(Group, String, String, H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
adExIaFCell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
AdExIaFCell - Class in org.neuroml.model
+
+
Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
+
+
AdExIaFCell() - Constructor for class org.neuroml.model.AdExIaFCell
+
 
+
AllowedSpaces - Enum in org.neuroml.model
+
+
Java class for allowedSpaces.
+
+
alphac - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
alphaCondSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
AlphaCondSynapse - Class in org.neuroml.model
+
+
Alpha synapse: rise time and decay time are both tau_syn.
+
+
AlphaCondSynapse() - Constructor for class org.neuroml.model.AlphaCondSynapse
+
 
+
alphaCurrentSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
AlphaCurrentSynapse - Class in org.neuroml.model
+
+
Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current
+
+
AlphaCurrentSynapse() - Constructor for class org.neuroml.model.AlphaCurrentSynapse
+
 
+
alphaCurrSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
AlphaCurrSynapse - Class in org.neuroml.model
+
+
Alpha synapse: rise time and decay time are both tau_syn.
+
+
AlphaCurrSynapse() - Constructor for class org.neuroml.model.AlphaCurrSynapse
+
 
+
alphaSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
AlphaSynapse - Class in org.neuroml.model
+
+
Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
+
+
AlphaSynapse() - Constructor for class org.neuroml.model.AlphaSynapse
+
 
+
amplitude - Variable in class org.neuroml.model.PulseGenerator
+
 
+
amplitude - Variable in class org.neuroml.model.PulseGeneratorDL
+
 
+
amplitude - Variable in class org.neuroml.model.SineGenerator
+
 
+
amplitude - Variable in class org.neuroml.model.SineGeneratorDL
+
 
+
annotation - Variable in class org.neuroml.model.SegmentGroup
+
 
+
annotation - Variable in class org.neuroml.model.Standalone
+
 
+
Annotation - Class in org.neuroml.model
+
+
A structured annotation containing metadata, specifically RDF or **property** elements
+
+
Annotation() - Constructor for class org.neuroml.model.Annotation
+
 
+
any - Variable in class org.neuroml.model.Annotation
+
 
+
any - Variable in class org.neuroml.model.CellSet
+
 
+
any - Variable in class org.neuroml.model.ForwardTransition
+
 
+
any - Variable in class org.neuroml.model.ReactionScheme
+
 
+
any - Variable in class org.neuroml.model.Region
+
 
+
any - Variable in class org.neuroml.model.ReverseTransition
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AdExIaFCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCondSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCurrentSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCurrSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Annotation
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Base
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCellMembPotCap
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConductanceBasedSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCurrentBasedSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseNonNegativeIntegerId
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseProjection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNIaFCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNIaFCondCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePynnSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseVoltageDepSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseWithoutId
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BiophysicalProperties
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BlockingPlasticSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BlockMechanism
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Case
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Cell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Cell2CaPools
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CellSet
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensity
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityGHK
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityGHK2
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNernst
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNernstCa2
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniform
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityVShift
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelPopulation
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ClosedState
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ComponentType
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CompoundInput
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CompoundInputDL
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConcentrationModelD
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConditionalDerivedVariable
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Connection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConnectionWD
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Constant
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnectionInstance
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnectionInstanceW
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousProjection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DerivedParameter
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DerivedVariable
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DistalDetails
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DoubleSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Dynamics
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EIFCondAlphaIsfaIsta
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnectionInstance
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnectionInstanceW
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalProjection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EventOut
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpCondSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpCurrSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExplicitInput
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpOneSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Exposure
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpThreeSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpTwoSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExtracellularProperties
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExtracellularPropertiesLocal
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FitzHughNagumoCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ForwardTransition
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GapJunction
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateFractional
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateFractionalSubgate
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHInstantaneous
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRates
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesInf
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesTau
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesTauInf
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHTauInf
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHUndetermined
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateKS
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GradedSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GridLayout
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHCondExp
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHRate
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHTime
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHVariable
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafRefCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafTauCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafTauRefCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCondAlpha
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCondExp
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCurrAlpha
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCurrExp
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Include
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IncludeType
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InhomogeneousParameter
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InhomogeneousValue
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InitMembPotential
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Input
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InputList
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InputW
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Instance
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InstanceRequirement
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IntracellularProperties
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IntracellularProperties2CaPools
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannel
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelHH
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelKS
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelScalable
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelVShift
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Izhikevich2007Cell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IzhikevichCell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Layout
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.LEMSProperty
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.LinearGradedSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Location
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Member
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.MembraneProperties
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.MembraneProperties2CaPools
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Morphology
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NamedDimensionalType
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NamedDimensionalVariable
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Network
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NeuroMLDocument
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnCondition
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnEntry
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnEvent
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnStart
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OpenState
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Parameter
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Path
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PlasticityMechanism
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Point3DWithDiam
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PoissonFiringSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Population
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Projection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Property
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ProximalDetails
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PulseGenerator
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PulseGeneratorDL
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Q10ConductanceScaling
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Q10Settings
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RampGenerator
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RampGeneratorDL
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RandomLayout
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ReactionScheme
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Regime
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Region
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Requirement
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Resistivity
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ReverseTransition
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Segment
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentEndPoint
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentGroup
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentParent
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SilentSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SineGenerator
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SineGeneratorDL
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Space
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpaceStructure
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Species
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpecificCapacitance
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Spike
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeArray
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGenerator
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorPoisson
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorRandom
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorRefPoisson
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeSourcePoisson
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeThresh
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Standalone
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.StateAssignment
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.StateVariable
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SubTree
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SynapticConnection
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TauInfTransition
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TimeDerivative
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TimedSynapticInput
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Transition
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.UnstructuredLayout
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VariableParameter
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VoltageClamp
+
 
+
append(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VoltageClampTriple
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AdExIaFCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCondSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCurrentSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaCurrSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.AlphaSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Annotation
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Base
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCellMembPotCap
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConductanceBasedSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseCurrentBasedSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseNonNegativeIntegerId
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseProjection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNIaFCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePyNNIaFCondCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BasePynnSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseVoltageDepSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BaseWithoutId
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BiophysicalProperties
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BlockingPlasticSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.BlockMechanism
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Case
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Cell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Cell2CaPools
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CellSet
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensity
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityGHK
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityGHK2
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNernst
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNernstCa2
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniform
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelDensityVShift
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ChannelPopulation
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ClosedState
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ComponentType
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CompoundInput
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.CompoundInputDL
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConcentrationModelD
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConditionalDerivedVariable
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Connection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ConnectionWD
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Constant
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnectionInstance
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousConnectionInstanceW
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ContinuousProjection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DerivedParameter
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DerivedVariable
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DistalDetails
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.DoubleSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Dynamics
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EIFCondAlphaIsfaIsta
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnectionInstance
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalConnectionInstanceW
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ElectricalProjection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.EventOut
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpCondSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpCurrSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExplicitInput
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpOneSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Exposure
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpThreeSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExpTwoSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExtracellularProperties
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ExtracellularPropertiesLocal
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FitzHughNagumoCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ForwardTransition
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GapJunction
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateFractional
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateFractionalSubgate
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHInstantaneous
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRates
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesInf
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesTau
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHRatesTauInf
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHTauInf
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateHHUndetermined
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GateKS
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GradedSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.GridLayout
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHCondExp
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHRate
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHTime
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HHVariable
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafRefCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafTauCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IafTauRefCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCondAlpha
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCondExp
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCurrAlpha
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IFCurrExp
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Include
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IncludeType
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InhomogeneousParameter
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InhomogeneousValue
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InitMembPotential
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Input
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InputList
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InputW
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Instance
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.InstanceRequirement
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IntracellularProperties
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IntracellularProperties2CaPools
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannel
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelHH
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelKS
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelScalable
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IonChannelVShift
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Izhikevich2007Cell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.IzhikevichCell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Layout
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.LEMSProperty
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.LinearGradedSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Location
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Member
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.MembraneProperties
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.MembraneProperties2CaPools
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Morphology
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NamedDimensionalType
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NamedDimensionalVariable
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Network
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.NeuroMLDocument
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnCondition
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnEntry
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnEvent
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OnStart
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.OpenState
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Parameter
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Path
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PlasticityMechanism
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Point3DWithDiam
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PoissonFiringSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Population
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Projection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Property
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ProximalDetails
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PulseGenerator
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.PulseGeneratorDL
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Q10ConductanceScaling
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Q10Settings
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RampGenerator
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RampGeneratorDL
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.RandomLayout
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ReactionScheme
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Regime
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Region
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Requirement
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Resistivity
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.ReverseTransition
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Segment
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentEndPoint
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentGroup
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SegmentParent
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SilentSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SineGenerator
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SineGeneratorDL
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Space
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpaceStructure
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Species
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpecificCapacitance
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Spike
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeArray
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGenerator
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorPoisson
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorRandom
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeGeneratorRefPoisson
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeSourcePoisson
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SpikeThresh
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Standalone
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.StateAssignment
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.StateVariable
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SubTree
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.SynapticConnection
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TauInfTransition
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TimeDerivative
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TimedSynapticInput
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.Transition
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.UnstructuredLayout
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VariableParameter
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VoltageClamp
+
 
+
appendFields(ObjectLocator, StringBuilder, ToStringStrategy2) - Method in class org.neuroml.model.VoltageClampTriple
+
 
+
averageRate - Variable in class org.neuroml.model.PoissonFiringSynapse
+
 
+
averageRate - Variable in class org.neuroml.model.SpikeGeneratorPoisson
+
 
+
averageRate - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
+

B

+
+
b - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
b - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
b - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
b - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
b - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
b - Variable in class org.neuroml.model.IzhikevichCell
+
 
+
Base - Class in org.neuroml.model
+
+
Anything which can have a unique (within its parent) id of the form NmlId (spaceless combination of letters, numbers and underscore).
+
+
Base() - Constructor for class org.neuroml.model.Base
+
 
+
BASE_CELL_CAP_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_CELL_CAP_POINT_COND_BASED - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_CELL_CAP_POINT_COND_BASED_CA - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_CELL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_CELL_COMP_TYPE_CAP__I_MEMB - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_CONC_DEP_RATE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_CONC_DEP_VAR_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_COND_SCALING_CA - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_GATE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_GRADED_SYNAPSE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_IAF_CAP_CELL - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_IAF_CELL - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_ION_CHANNEL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_PLASTICITY_MECHANISM_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_POINT_CURR_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_POINT_CURR_DL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_PYNN_CELL - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_RATE_SYNAPSE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_RATE_UNIT - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_SPIKE_SOURCE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_SYNAPSE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
BASE_VOLT_DEP_CURR_SRC_SPIKING_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
baseCell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
BaseCell - Class in org.neuroml.model
+
+
Base type of any cell ( e.
+
+
BaseCell() - Constructor for class org.neuroml.model.BaseCell
+
 
+
BaseCellMembPotCap - Class in org.neuroml.model
+
+
Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance
+
+
BaseCellMembPotCap() - Constructor for class org.neuroml.model.BaseCellMembPotCap
+
 
+
BaseConductanceBasedSynapse - Class in org.neuroml.model
+
+
Synapse model which exposes a conductance **g** in addition to producing a current.
+
+
BaseConductanceBasedSynapse() - Constructor for class org.neuroml.model.BaseConductanceBasedSynapse
+
 
+
BaseConductanceBasedSynapseTwo - Class in org.neuroml.model
+
+
Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
+
+
BaseConductanceBasedSynapseTwo() - Constructor for class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
 
+
BaseConnection - Class in org.neuroml.model
+
+
Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
+
+
BaseConnection() - Constructor for class org.neuroml.model.BaseConnection
+
 
+
BaseConnectionNewFormat - Class in org.neuroml.model
+
+
Base of all synaptic connections with preCell, postSegment, etc.
+
+
BaseConnectionNewFormat() - Constructor for class org.neuroml.model.BaseConnectionNewFormat
+
 
+
BaseConnectionOldFormat - Class in org.neuroml.model
+
+
Base of all synaptic connections with preCellId, postSegmentId, etc.
+
+
BaseConnectionOldFormat() - Constructor for class org.neuroml.model.BaseConnectionOldFormat
+
 
+
BaseCurrentBasedSynapse - Class in org.neuroml.model
+
+
Synapse model which produces a synaptic current.
+
+
BaseCurrentBasedSynapse() - Constructor for class org.neuroml.model.BaseCurrentBasedSynapse
+
 
+
basedOn - Variable in class org.neuroml.model.Space
+
 
+
baselineAmplitude - Variable in class org.neuroml.model.RampGenerator
+
 
+
baselineAmplitude - Variable in class org.neuroml.model.RampGeneratorDL
+
 
+
BaseNonNegativeIntegerId - Class in org.neuroml.model
+
+
Anything which can have a unique (within its parent) id, which must be an integer zero or greater.
+
+
BaseNonNegativeIntegerId() - Constructor for class org.neuroml.model.BaseNonNegativeIntegerId
+
 
+
BaseProjection - Class in org.neuroml.model
+
+
Base for projection (set of synaptic connections) between two populations
+
+
BaseProjection() - Constructor for class org.neuroml.model.BaseProjection
+
 
+
BasePyNNCell - Class in org.neuroml.model
+
+
Base type of any PyNN standard cell model.
+
+
BasePyNNCell() - Constructor for class org.neuroml.model.BasePyNNCell
+
 
+
BasePyNNIaFCell - Class in org.neuroml.model
+
+
Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
BasePyNNIaFCell() - Constructor for class org.neuroml.model.BasePyNNIaFCell
+
 
+
BasePyNNIaFCondCell - Class in org.neuroml.model
+
+
Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
BasePyNNIaFCondCell() - Constructor for class org.neuroml.model.BasePyNNIaFCondCell
+
 
+
BasePynnSynapse - Class in org.neuroml.model
+
+
Base type for all PyNN synapses.
+
+
BasePynnSynapse() - Constructor for class org.neuroml.model.BasePynnSynapse
+
 
+
BaseSynapse - Class in org.neuroml.model
+
+
Base type for all synapses, i.
+
+
BaseSynapse() - Constructor for class org.neuroml.model.BaseSynapse
+
 
+
BaseVoltageDepSynapse - Class in org.neuroml.model
+
+
Base type for synapses with a dependence on membrane potential
+
+
BaseVoltageDepSynapse() - Constructor for class org.neuroml.model.BaseVoltageDepSynapse
+
 
+
BaseWithoutId - Class in org.neuroml.model
+
+
Base element without ID specified *yet*, e.g.
+
+
BaseWithoutId() - Constructor for class org.neuroml.model.BaseWithoutId
+
 
+
betac - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
biophysicalProperties - Variable in class org.neuroml.model.Cell
+
 
+
biophysicalProperties - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
BiophysicalProperties - Class in org.neuroml.model
+
+
The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
+
+
BiophysicalProperties() - Constructor for class org.neuroml.model.BiophysicalProperties
+
 
+
biophysicalProperties2CaPools - Variable in class org.neuroml.model.Cell2CaPools
+
 
+
BiophysicalProperties2CaPools - Class in org.neuroml.model
+
+
The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
+
+
BiophysicalProperties2CaPools() - Constructor for class org.neuroml.model.BiophysicalProperties2CaPools
+
 
+
biophysicalPropertiesAttr - Variable in class org.neuroml.model.Cell
+
 
+
blockConcentration - Variable in class org.neuroml.model.BlockMechanism
+
 
+
blockingPlasticSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
BlockingPlasticSynapse - Class in org.neuroml.model
+
+
Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
+
+
BlockingPlasticSynapse() - Constructor for class org.neuroml.model.BlockingPlasticSynapse
+
 
+
blockMechanism - Variable in class org.neuroml.model.BlockingPlasticSynapse
+
 
+
BlockMechanism - Class in org.neuroml.model
+
+
Java class for BlockMechanism complex type.
+
+
BlockMechanism() - Constructor for class org.neuroml.model.BlockMechanism
+
 
+
BlockTypes - Enum in org.neuroml.model
+
+
Java class for BlockTypes.
+
+
+

C

+
+
c - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
c - Variable in class org.neuroml.model.IafCell
+
 
+
c - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
c - Variable in class org.neuroml.model.IzhikevichCell
+
 
+
cap - Variable in class org.neuroml.model.BaseCellMembPotCap
+
 
+
Case - Class in org.neuroml.model
+
+
Java class for Case complex type.
+
+
Case() - Constructor for class org.neuroml.model.Case
+
 
+
cell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
Cell - Class in org.neuroml.model
+
+
Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
+
+
Cell() - Constructor for class org.neuroml.model.Cell
+
 
+
CELL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
cell2CaPools - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
Cell2CaPools - Class in org.neuroml.model
+
+
Variant of cell with two independent Ca2+ pools.
+
+
Cell2CaPools() - Constructor for class org.neuroml.model.Cell2CaPools
+
 
+
cellSet - Variable in class org.neuroml.model.Network
+
 
+
CellSet - Class in org.neuroml.model
+
+
Java class for CellSet complex type.
+
+
CellSet() - Constructor for class org.neuroml.model.CellSet
+
 
+
CellUtils - Class in org.neuroml.model.util
+
 
+
CellUtils() - Constructor for class org.neuroml.model.util.CellUtils
+
 
+
channelDensity - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelDensity - Class in org.neuroml.model
+
+
Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** + \n + :param erev: The reversal potential of the current produced + :type erev: voltage + :param condDensity: + :type condDensity: conductanceDensity
+
+
ChannelDensity() - Constructor for class org.neuroml.model.ChannelDensity
+
 
+
channelDensityGHK - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelDensityGHK - Class in org.neuroml.model
+
+
Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation.
+
+
ChannelDensityGHK() - Constructor for class org.neuroml.model.ChannelDensityGHK
+
 
+
channelDensityGHK2 - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelDensityGHK2 - Class in org.neuroml.model
+
+
Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al.
+
+
ChannelDensityGHK2() - Constructor for class org.neuroml.model.ChannelDensityGHK2
+
 
+
channelDensityNernst - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelDensityNernst - Class in org.neuroml.model
+
+
Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation.
+
+
ChannelDensityNernst() - Constructor for class org.neuroml.model.ChannelDensityNernst
+
 
+
channelDensityNernstCa2 - Variable in class org.neuroml.model.MembraneProperties2CaPools
+
 
+
ChannelDensityNernstCa2 - Class in org.neuroml.model
+
+
This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ).
+
+
ChannelDensityNernstCa2() - Constructor for class org.neuroml.model.ChannelDensityNernstCa2
+
 
+
channelDensityNonUniform - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelDensityNonUniform - Class in org.neuroml.model
+
+
Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** .
+
+
ChannelDensityNonUniform() - Constructor for class org.neuroml.model.ChannelDensityNonUniform
+
 
+
channelDensityNonUniformGHK - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelDensityNonUniformGHK - Class in org.neuroml.model
+
+
Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation.
+
+
ChannelDensityNonUniformGHK() - Constructor for class org.neuroml.model.ChannelDensityNonUniformGHK
+
 
+
channelDensityNonUniformNernst - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelDensityNonUniformNernst - Class in org.neuroml.model
+
+
Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation.
+
+
ChannelDensityNonUniformNernst() - Constructor for class org.neuroml.model.ChannelDensityNonUniformNernst
+
 
+
channelDensityVShift - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelDensityVShift - Class in org.neuroml.model
+
+
Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates.
+
+
ChannelDensityVShift() - Constructor for class org.neuroml.model.ChannelDensityVShift
+
 
+
channelPopulation - Variable in class org.neuroml.model.MembraneProperties
+
 
+
ChannelPopulation - Class in org.neuroml.model
+
+
Population of a **number** of ohmic ion channels.
+
+
ChannelPopulation() - Constructor for class org.neuroml.model.ChannelPopulation
+
 
+
ChannelTypes - Enum in org.neuroml.model
+
+
Java class for channelTypes.
+
+
close(H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
closedState - Variable in class org.neuroml.model.GateKS
+
 
+
ClosedState - Class in org.neuroml.model
+
+
A **KSState** with **relativeConductance** of 0 + \n + :param relativeConductance: + :type relativeConductance: none
+
+
ClosedState() - Constructor for class org.neuroml.model.ClosedState
+
 
+
cm - Variable in class org.neuroml.model.BasePyNNCell
+
 
+
cm - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
compare(String, String) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
 
+
component - Variable in class org.neuroml.model.InputList
+
 
+
component - Variable in class org.neuroml.model.Population
+
 
+
componentType - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
ComponentType - Class in org.neuroml.model
+
+
Contains an extension to NeuroML by creating custom LEMS ComponentType.
+
+
ComponentType() - Constructor for class org.neuroml.model.ComponentType
+
 
+
compoundInput - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
CompoundInput - Class in org.neuroml.model
+
+
Generates a current which is the sum of all its child **basePointCurrent** element, e.
+
+
CompoundInput() - Constructor for class org.neuroml.model.CompoundInput
+
 
+
compoundInputDL - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
CompoundInputDL - Class in org.neuroml.model
+
+
Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
+
+
CompoundInputDL() - Constructor for class org.neuroml.model.CompoundInputDL
+
 
+
CONC_MODEL_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
CONC_MODEL_CONC_STATE_VAR - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
CONC_MODEL_INIT_CONC - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
CONC_MODEL_INIT_EXT_CONC - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
CONC_MODEL_SURF_AREA - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
concentrationModel - Variable in class org.neuroml.model.Species
+
 
+
ConcentrationModelD - Class in org.neuroml.model
+
+
Java class for ConcentrationModel_D complex type.
+
+
ConcentrationModelD() - Constructor for class org.neuroml.model.ConcentrationModelD
+
 
+
condDensity - Variable in class org.neuroml.model.ChannelDensity
+
 
+
condDensity - Variable in class org.neuroml.model.ChannelDensityGHK2
+
 
+
condDensity - Variable in class org.neuroml.model.ChannelDensityNernst
+
 
+
condition - Variable in class org.neuroml.model.Case
+
 
+
conditionalDerivedVariable - Variable in class org.neuroml.model.Dynamics
+
 
+
ConditionalDerivedVariable - Class in org.neuroml.model
+
+
Java class for ConditionalDerivedVariable complex type.
+
+
ConditionalDerivedVariable() - Constructor for class org.neuroml.model.ConditionalDerivedVariable
+
 
+
conditioningVoltage - Variable in class org.neuroml.model.VoltageClampTriple
+
 
+
conductance - Variable in class org.neuroml.model.GapJunction
+
 
+
conductance - Variable in class org.neuroml.model.GradedSynapse
+
 
+
conductance - Variable in class org.neuroml.model.IonChannel
+
 
+
conductance - Variable in class org.neuroml.model.IonChannelKS
+
 
+
conductance - Variable in class org.neuroml.model.LinearGradedSynapse
+
 
+
connection - Variable in class org.neuroml.model.Projection
+
 
+
Connection - Class in org.neuroml.model
+
+
Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component.
+
+
Connection() - Constructor for class org.neuroml.model.Connection
+
 
+
CONNECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
CONNECTION_WEIGHT_DELAY - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
connectionInfo(BaseConnectionNewFormat) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
connectionInfo(BaseConnectionOldFormat) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
connectionWD - Variable in class org.neuroml.model.Projection
+
 
+
ConnectionWD - Class in org.neuroml.model
+
+
Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection + \n + :param weight: + :type weight: none + :param delay: + :type delay: time
+
+
ConnectionWD() - Constructor for class org.neuroml.model.ConnectionWD
+
 
+
constant - Variable in class org.neuroml.model.ComponentType
+
 
+
Constant - Class in org.neuroml.model
+
+
LEMS ComponentType for Constant.
+
+
Constant() - Constructor for class org.neuroml.model.Constant
+
 
+
CONTINUOUS_CONNECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
CONTINUOUS_CONNECTION_INSTANCE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
CONTINUOUS_CONNECTION_INSTANCE_WEIGHT - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
CONTINUOUS_PROJECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
continuousConnection - Variable in class org.neuroml.model.ContinuousProjection
+
 
+
ContinuousConnection - Class in org.neuroml.model
+
+
An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
+
+
ContinuousConnection() - Constructor for class org.neuroml.model.ContinuousConnection
+
 
+
continuousConnectionInstance - Variable in class org.neuroml.model.ContinuousProjection
+
 
+
ContinuousConnectionInstance - Class in org.neuroml.model
+
+
An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
+
+
ContinuousConnectionInstance() - Constructor for class org.neuroml.model.ContinuousConnectionInstance
+
 
+
continuousConnectionInstanceW - Variable in class org.neuroml.model.ContinuousProjection
+
 
+
ContinuousConnectionInstanceW - Class in org.neuroml.model
+
+
An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
+
+
ContinuousConnectionInstanceW() - Constructor for class org.neuroml.model.ContinuousConnectionInstanceW
+
 
+
continuousProjection - Variable in class org.neuroml.model.Network
+
 
+
ContinuousProjection - Class in org.neuroml.model
+
+
A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** .
+
+
ContinuousProjection() - Constructor for class org.neuroml.model.ContinuousProjection
+
 
+
convertNeuroML2ToLems(String) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
createAdExIaFCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of AdExIaFCell
+
+
createAlphaCondSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of AlphaCondSynapse
+
+
createAlphaCurrentSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of AlphaCurrentSynapse
+
+
createAlphaCurrSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of AlphaCurrSynapse
+
+
createAlphaSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of AlphaSynapse
+
+
createAnnotation() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Annotation
+
+
createBase() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Base
+
+
createBaseCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseCell
+
+
createBaseCellMembPotCap() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseCellMembPotCap
+
+
createBaseConductanceBasedSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseConductanceBasedSynapse
+
+
createBaseConductanceBasedSynapseTwo() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseConductanceBasedSynapseTwo
+
+
createBaseConnection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseConnection
+
+
createBaseConnectionNewFormat() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseConnectionNewFormat
+
+
createBaseConnectionOldFormat() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseConnectionOldFormat
+
+
createBaseCurrentBasedSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseCurrentBasedSynapse
+
+
createBaseNonNegativeIntegerId() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseNonNegativeIntegerId
+
+
createBaseProjection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseProjection
+
+
createBasePyNNCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BasePyNNCell
+
+
createBasePyNNIaFCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BasePyNNIaFCell
+
+
createBasePyNNIaFCondCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BasePyNNIaFCondCell
+
+
createBasePynnSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BasePynnSynapse
+
+
createBaseSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseSynapse
+
+
createBaseVoltageDepSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseVoltageDepSynapse
+
+
createBaseWithoutId() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BaseWithoutId
+
+
createBiophysicalProperties() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BiophysicalProperties
+
+
createBiophysicalProperties2CaPools() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BiophysicalProperties2CaPools
+
+
createBlockingPlasticSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BlockingPlasticSynapse
+
+
createBlockMechanism() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of BlockMechanism
+
+
createCase() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Case
+
+
createCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Cell
+
+
createCell2CaPools() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Cell2CaPools
+
+
createCellSet() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of CellSet
+
+
createChannelDensity() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensity
+
+
createChannelDensityGHK() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensityGHK
+
+
createChannelDensityGHK2() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensityGHK2
+
+
createChannelDensityNernst() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensityNernst
+
+
createChannelDensityNernstCa2() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensityNernstCa2
+
+
createChannelDensityNonUniform() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensityNonUniform
+
+
createChannelDensityNonUniformGHK() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensityNonUniformGHK
+
+
createChannelDensityNonUniformNernst() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensityNonUniformNernst
+
+
createChannelDensityVShift() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelDensityVShift
+
+
createChannelPopulation() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ChannelPopulation
+
+
createClosedState() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ClosedState
+
+
createComponentType() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ComponentType
+
+
createCompoundInput() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of CompoundInput
+
+
createCompoundInputDL() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of CompoundInputDL
+
+
createConcentrationModelD() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ConcentrationModelD
+
+
createConditionalDerivedVariable() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ConditionalDerivedVariable
+
+
createConnection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Connection
+
+
createConnectionWD() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ConnectionWD
+
+
createConstant() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Constant
+
+
createContinuousConnection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ContinuousConnection
+
+
createContinuousConnectionInstance() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ContinuousConnectionInstance
+
+
createContinuousConnectionInstanceW() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ContinuousConnectionInstanceW
+
+
createContinuousProjection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ContinuousProjection
+
+
createDecayingPoolConcentrationModel() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of DecayingPoolConcentrationModel
+
+
createDerivedParameter() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of DerivedParameter
+
+
createDerivedVariable() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of DerivedVariable
+
+
createDistalDetails() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of DistalDetails
+
+
createDoubleSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of DoubleSynapse
+
+
createDynamics() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Dynamics
+
+
createEIFCondAlphaIsfaIsta() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of EIFCondAlphaIsfaIsta
+
+
createEIFCondExpIsfaIsta() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of EIFCondExpIsfaIsta
+
+
createElectricalConnection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ElectricalConnection
+
+
createElectricalConnectionInstance() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ElectricalConnectionInstance
+
+
createElectricalConnectionInstanceW() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ElectricalConnectionInstanceW
+
+
createElectricalProjection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ElectricalProjection
+
+
createEventOut() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of EventOut
+
+
createExpCondSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ExpCondSynapse
+
+
createExpCurrSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ExpCurrSynapse
+
+
createExplicitInput() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ExplicitInput
+
+
createExpOneSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ExpOneSynapse
+
+
createExposure() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Exposure
+
+
createExpThreeSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ExpThreeSynapse
+
+
createExpTwoSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ExpTwoSynapse
+
+
createExtracellularProperties() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ExtracellularProperties
+
+
createExtracellularPropertiesLocal() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ExtracellularPropertiesLocal
+
+
createFitzHughNagumo1969Cell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of FitzHughNagumo1969Cell
+
+
createFitzHughNagumoCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of FitzHughNagumoCell
+
+
createFixedFactorConcentrationModel() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of FixedFactorConcentrationModel
+
+
createForwardTransition() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ForwardTransition
+
+
createGapJunction() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GapJunction
+
+
createGateFractional() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateFractional
+
+
createGateFractionalSubgate() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateFractionalSubgate
+
+
createGateHHInstantaneous() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateHHInstantaneous
+
+
createGateHHRates() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateHHRates
+
+
createGateHHRatesInf() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateHHRatesInf
+
+
createGateHHRatesTau() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateHHRatesTau
+
+
createGateHHRatesTauInf() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateHHRatesTauInf
+
+
createGateHHTauInf() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateHHTauInf
+
+
createGateHHUndetermined() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateHHUndetermined
+
+
createGateKS() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GateKS
+
+
createGradedSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GradedSynapse
+
+
createGridLayout() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of GridLayout
+
+
createH5file(File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
createHHCondExp() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of HHCondExp
+
+
createHHRate() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of HHRate
+
+
createHHTime() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of HHTime
+
+
createHHVariable() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of HHVariable
+
+
createHindmarshRose1984Cell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of HindmarshRose1984Cell
+
+
createIafCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IafCell
+
+
createIafRefCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IafRefCell
+
+
createIafTauCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IafTauCell
+
+
createIafTauRefCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IafTauRefCell
+
+
createIFCondAlpha() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IFCondAlpha
+
+
createIFCondExp() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IFCondExp
+
+
createIFCurrAlpha() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IFCurrAlpha
+
+
createIFCurrExp() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IFCurrExp
+
+
createInclude() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Include
+
+
createIncludeType() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IncludeType
+
+
createInhomogeneousParameter() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of InhomogeneousParameter
+
+
createInhomogeneousValue() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of InhomogeneousValue
+
+
createInitMembPotential() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of InitMembPotential
+
+
createInput() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Input
+
+
createInputList() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of InputList
+
+
createInputW() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of InputW
+
+
createInstance() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Instance
+
+
createInstanceRequirement() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of InstanceRequirement
+
+
createIntracellularProperties() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IntracellularProperties
+
+
createIntracellularProperties2CaPools() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IntracellularProperties2CaPools
+
+
createIonChannel() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IonChannel
+
+
createIonChannelHH() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IonChannelHH
+
+
createIonChannelKS() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IonChannelKS
+
+
createIonChannelScalable() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IonChannelScalable
+
+
createIonChannelVShift() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IonChannelVShift
+
+
createIzhikevich2007Cell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Izhikevich2007Cell
+
+
createIzhikevichCell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of IzhikevichCell
+
+
createLayout() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Layout
+
+
createLEMSProperty() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of LEMSProperty
+
+
createLinearGradedSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of LinearGradedSynapse
+
+
createLocation() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Location
+
+
createMember() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Member
+
+
createMembraneProperties() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of MembraneProperties
+
+
createMembraneProperties2CaPools() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of MembraneProperties2CaPools
+
+
createMorphology() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Morphology
+
+
createNamedDimensionalType() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of NamedDimensionalType
+
+
createNamedDimensionalVariable() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of NamedDimensionalVariable
+
+
createNetwork() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Network
+
+
createNeuroml(NeuroMLDocument) - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of JAXBElement<NeuroMLDocument>
+
+
createNeuroMLDocument() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of NeuroMLDocument
+
+
createNeuroMLH5file(NeuroMLDocument, File) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
 
+
createOnCondition() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of OnCondition
+
+
createOnEntry() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of OnEntry
+
+
createOnEvent() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of OnEvent
+
+
createOnStart() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of OnStart
+
+
createOpenState() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of OpenState
+
+
createParameter() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Parameter
+
+
createPath() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Path
+
+
createPinskyRinzelCA3Cell() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of PinskyRinzelCA3Cell
+
+
createPlasticityMechanism() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of PlasticityMechanism
+
+
createPoint3DWithDiam() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Point3DWithDiam
+
+
createPoissonFiringSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of PoissonFiringSynapse
+
+
createPopulation() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Population
+
+
createProjection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Projection
+
+
createProperty() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Property
+
+
createProximalDetails() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ProximalDetails
+
+
createPulseGenerator() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of PulseGenerator
+
+
createPulseGeneratorDL() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of PulseGeneratorDL
+
+
createQ10ConductanceScaling() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Q10ConductanceScaling
+
+
createQ10Settings() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Q10Settings
+
+
createRampGenerator() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of RampGenerator
+
+
createRampGeneratorDL() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of RampGeneratorDL
+
+
createRandomLayout() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of RandomLayout
+
+
createReactionScheme() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ReactionScheme
+
+
createRegime() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Regime
+
+
createRegion() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Region
+
+
createRequirement() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Requirement
+
+
createResistivity() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Resistivity
+
+
createReverseTransition() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of ReverseTransition
+
+
createSegment() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Segment
+
+
createSegmentEndPoint() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SegmentEndPoint
+
+
createSegmentGroup() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SegmentGroup
+
+
createSegmentParent() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SegmentParent
+
+
createSilentSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SilentSynapse
+
+
createSineGenerator() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SineGenerator
+
+
createSineGeneratorDL() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SineGeneratorDL
+
+
createSpace() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Space
+
+
createSpaceStructure() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpaceStructure
+
+
createSpecies() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Species
+
+
createSpecificCapacitance() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpecificCapacitance
+
+
createSpike() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Spike
+
+
createSpikeArray() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpikeArray
+
+
createSpikeGenerator() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpikeGenerator
+
+
createSpikeGeneratorPoisson() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpikeGeneratorPoisson
+
+
createSpikeGeneratorRandom() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpikeGeneratorRandom
+
+
createSpikeGeneratorRefPoisson() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpikeGeneratorRefPoisson
+
+
createSpikeSourcePoisson() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpikeSourcePoisson
+
+
createSpikeThresh() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SpikeThresh
+
+
createStandalone() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Standalone
+
+
createStateAssignment() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of StateAssignment
+
+
createStateVariable() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of StateVariable
+
+
createSubTree() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SubTree
+
+
createSynapticConnection() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of SynapticConnection
+
+
createTauInfTransition() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of TauInfTransition
+
+
createTimeDerivative() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of TimeDerivative
+
+
createTimedSynapticInput() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of TimedSynapticInput
+
+
createTransientPoissonFiringSynapse() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of TransientPoissonFiringSynapse
+
+
createTransition() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of Transition
+
+
createUnstructuredLayout() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of UnstructuredLayout
+
+
createVariableParameter() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of VariableParameter
+
+
createVoltageClamp() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of VoltageClamp
+
+
createVoltageClampTriple() - Method in class org.neuroml.model.ObjectFactory
+
+
Create an instance of VoltageClampTriple
+
+
+

D

+
+
d - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
d - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
d - Variable in class org.neuroml.model.IzhikevichCell
+
 
+
dataSet(Dataset) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
decayConstant - Variable in class org.neuroml.model.DecayingPoolConcentrationModel
+
 
+
decayConstant - Variable in class org.neuroml.model.FixedFactorConcentrationModel
+
 
+
decayingPoolConcentrationModel - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
DecayingPoolConcentrationModel - Class in org.neuroml.model
+
+
Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param shellThickness: + :type shellThickness: length
+
+
DecayingPoolConcentrationModel() - Constructor for class org.neuroml.model.DecayingPoolConcentrationModel
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_0 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_1 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_2 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_3 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_ALPHA - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA1 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA2 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA3 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA4 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
DEFAULT_SCHEMA_LOCATION_VERSION_2_BETA5 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
defaultValue - Variable in class org.neuroml.model.LEMSProperty
+
 
+
delay - Variable in class org.neuroml.model.ConnectionWD
+
 
+
delay - Variable in class org.neuroml.model.PulseGenerator
+
 
+
delay - Variable in class org.neuroml.model.PulseGeneratorDL
+
 
+
delay - Variable in class org.neuroml.model.RampGenerator
+
 
+
delay - Variable in class org.neuroml.model.RampGeneratorDL
+
 
+
delay - Variable in class org.neuroml.model.SineGenerator
+
 
+
delay - Variable in class org.neuroml.model.SineGeneratorDL
+
 
+
delay - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
delay - Variable in class org.neuroml.model.VoltageClamp
+
 
+
delay - Variable in class org.neuroml.model.VoltageClampTriple
+
 
+
delT - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
delta - Variable in class org.neuroml.model.GradedSynapse
+
 
+
deltaT - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
derivedParameter - Variable in class org.neuroml.model.ComponentType
+
 
+
DerivedParameter - Class in org.neuroml.model
+
+
LEMS DerivedParamter element
+
+
DerivedParameter() - Constructor for class org.neuroml.model.DerivedParameter
+
 
+
derivedVariable - Variable in class org.neuroml.model.Dynamics
+
 
+
DerivedVariable - Class in org.neuroml.model
+
+
LEMS ComponentType for DerivedVariable
+
+
DerivedVariable() - Constructor for class org.neuroml.model.DerivedVariable
+
 
+
description - Variable in class org.neuroml.model.ComponentType
+
 
+
description - Variable in class org.neuroml.model.Constant
+
 
+
description - Variable in class org.neuroml.model.Exposure
+
 
+
description - Variable in class org.neuroml.model.NamedDimensionalType
+
 
+
description - Variable in class org.neuroml.model.NamedDimensionalVariable
+
 
+
description - Variable in class org.neuroml.model.util.StandardTest
+
 
+
destination - Variable in class org.neuroml.model.ExplicitInput
+
 
+
destination - Variable in class org.neuroml.model.Input
+
 
+
destination - Variable in class org.neuroml.model.SynapticConnection
+
 
+
diameter - Variable in class org.neuroml.model.Point3DWithDiam
+
 
+
dimension - Variable in class org.neuroml.model.Constant
+
 
+
dimension - Variable in class org.neuroml.model.Exposure
+
 
+
dimension - Variable in class org.neuroml.model.NamedDimensionalType
+
 
+
dimension - Variable in class org.neuroml.model.NamedDimensionalVariable
+
 
+
distal - Variable in class org.neuroml.model.InhomogeneousParameter
+
 
+
distal - Variable in class org.neuroml.model.Segment
+
 
+
DistalDetails - Class in org.neuroml.model
+
+
What to do at the distal point when creating an inhomogeneous parameter
+
+
DistalDetails() - Constructor for class org.neuroml.model.DistalDetails
+
 
+
distance(Point3DWithDiam, Point3DWithDiam) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
DOUBLE_SYNAPSE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
doubleSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
DoubleSynapse - Class in org.neuroml.model
+
+
Synapse consisting of two independent synaptic mechanisms ( e.
+
+
DoubleSynapse() - Constructor for class org.neuroml.model.DoubleSynapse
+
 
+
duration - Variable in class org.neuroml.model.PulseGenerator
+
 
+
duration - Variable in class org.neuroml.model.PulseGeneratorDL
+
 
+
duration - Variable in class org.neuroml.model.RampGenerator
+
 
+
duration - Variable in class org.neuroml.model.RampGeneratorDL
+
 
+
duration - Variable in class org.neuroml.model.SineGenerator
+
 
+
duration - Variable in class org.neuroml.model.SineGeneratorDL
+
 
+
duration - Variable in class org.neuroml.model.SpikeSourcePoisson
+
 
+
duration - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
duration - Variable in class org.neuroml.model.VoltageClamp
+
 
+
duration - Variable in class org.neuroml.model.VoltageClampTriple
+
 
+
dynamics - Variable in class org.neuroml.model.ComponentType
+
 
+
Dynamics - Class in org.neuroml.model
+
+
LEMS ComponentType for Dynamics
+
+
Dynamics() - Constructor for class org.neuroml.model.Dynamics
+
 
+
+

E

+
+
eCa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
eifCondAlphaIsfaIsta - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
EIFCondAlphaIsfaIsta - Class in org.neuroml.model
+
+
Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
EIFCondAlphaIsfaIsta() - Constructor for class org.neuroml.model.EIFCondAlphaIsfaIsta
+
 
+
eifCondExpIsfaIsta - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
EIFCondExpIsfaIsta - Class in org.neuroml.model
+
+
Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
EIFCondExpIsfaIsta() - Constructor for class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
ek - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
el - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
el - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
ELECTRICAL_CONNECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
ELECTRICAL_CONNECTION_INSTANCE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
ELECTRICAL_CONNECTION_INSTANCE_WEIGHT - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
ELECTRICAL_PROJECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
electricalConnection - Variable in class org.neuroml.model.ElectricalProjection
+
 
+
ElectricalConnection - Class in org.neuroml.model
+
+
To enable connections between populations through gap junctions.
+
+
ElectricalConnection() - Constructor for class org.neuroml.model.ElectricalConnection
+
 
+
electricalConnectionInstance - Variable in class org.neuroml.model.ElectricalProjection
+
 
+
ElectricalConnectionInstance - Class in org.neuroml.model
+
+
To enable connections between populations through gap junctions.
+
+
ElectricalConnectionInstance() - Constructor for class org.neuroml.model.ElectricalConnectionInstance
+
 
+
electricalConnectionInstanceW - Variable in class org.neuroml.model.ElectricalProjection
+
 
+
ElectricalConnectionInstanceW - Class in org.neuroml.model
+
+
To enable connections between populations through gap junctions.
+
+
ElectricalConnectionInstanceW() - Constructor for class org.neuroml.model.ElectricalConnectionInstanceW
+
 
+
electricalProjection - Variable in class org.neuroml.model.Network
+
 
+
ElectricalProjection - Class in org.neuroml.model
+
+
A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions.
+
+
ElectricalProjection() - Constructor for class org.neuroml.model.ElectricalProjection
+
 
+
eNa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
endGroup(Group) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
erev - Variable in class org.neuroml.model.BaseConductanceBasedSynapse
+
 
+
erev - Variable in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
 
+
erev - Variable in class org.neuroml.model.ChannelDensity
+
 
+
erev - Variable in class org.neuroml.model.ChannelDensityNonUniform
+
 
+
erev - Variable in class org.neuroml.model.ChannelPopulation
+
 
+
erev - Variable in class org.neuroml.model.GradedSynapse
+
 
+
eRev - Variable in class org.neuroml.model.AlphaCondSynapse
+
 
+
eRev - Variable in class org.neuroml.model.ExpCondSynapse
+
 
+
eRevE - Variable in class org.neuroml.model.BasePyNNIaFCondCell
+
 
+
eRevE - Variable in class org.neuroml.model.HHCondExp
+
 
+
eRevI - Variable in class org.neuroml.model.BasePyNNIaFCondCell
+
 
+
eRevI - Variable in class org.neuroml.model.HHCondExp
+
 
+
eRevK - Variable in class org.neuroml.model.HHCondExp
+
 
+
eRevLeak - Variable in class org.neuroml.model.HHCondExp
+
 
+
eRevNa - Variable in class org.neuroml.model.HHCondExp
+
 
+
ERROR - Enum constant in enum org.neuroml.model.util.StandardTest.LEVEL
+
 
+
EUCLIDEAN_1_D - Enum constant in enum org.neuroml.model.AllowedSpaces
+
 
+
EUCLIDEAN_2_D - Enum constant in enum org.neuroml.model.AllowedSpaces
+
 
+
EUCLIDEAN_3_D - Enum constant in enum org.neuroml.model.AllowedSpaces
+
 
+
eventOut - Variable in class org.neuroml.model.OnCondition
+
 
+
eventOut - Variable in class org.neuroml.model.OnEvent
+
 
+
EventOut - Class in org.neuroml.model
+
+
Java class for EventOut complex type.
+
+
EventOut() - Constructor for class org.neuroml.model.EventOut
+
 
+
expCondSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
ExpCondSynapse - Class in org.neuroml.model
+
+
Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none
+
+
ExpCondSynapse() - Constructor for class org.neuroml.model.ExpCondSynapse
+
 
+
expCurrSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
ExpCurrSynapse - Class in org.neuroml.model
+
+
Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none
+
+
ExpCurrSynapse() - Constructor for class org.neuroml.model.ExpCurrSynapse
+
 
+
experimentalTemp - Variable in class org.neuroml.model.Q10ConductanceScaling
+
 
+
experimentalTemp - Variable in class org.neuroml.model.Q10Settings
+
 
+
explicitInput - Variable in class org.neuroml.model.Network
+
 
+
ExplicitInput - Class in org.neuroml.model
+
+
An explicit input ( anything which extends **basePointCurrent** ) to a target cell in a population
+
+
ExplicitInput() - Constructor for class org.neuroml.model.ExplicitInput
+
 
+
expOneSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
ExpOneSynapse - Class in org.neuroml.model
+
+
Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
+
+
ExpOneSynapse() - Constructor for class org.neuroml.model.ExpOneSynapse
+
 
+
exposure - Variable in class org.neuroml.model.ComponentType
+
 
+
exposure - Variable in class org.neuroml.model.NamedDimensionalVariable
+
 
+
Exposure - Class in org.neuroml.model
+
+
LEMS Exposure (ComponentType property)
+
+
Exposure() - Constructor for class org.neuroml.model.Exposure
+
 
+
expThreeSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
ExpThreeSynapse - Class in org.neuroml.model
+
+
Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
+
+
ExpThreeSynapse() - Constructor for class org.neuroml.model.ExpThreeSynapse
+
 
+
expTwoSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
ExpTwoSynapse - Class in org.neuroml.model
+
+
Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
+
+
ExpTwoSynapse() - Constructor for class org.neuroml.model.ExpTwoSynapse
+
 
+
extracellularProperties - Variable in class org.neuroml.model.BiophysicalProperties
+
 
+
extracellularProperties - Variable in class org.neuroml.model.BiophysicalProperties2CaPools
+
 
+
extracellularProperties - Variable in class org.neuroml.model.Network
+
 
+
extracellularProperties - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
extracellularProperties - Variable in class org.neuroml.model.Population
+
 
+
ExtracellularProperties - Class in org.neuroml.model
+
+
Java class for ExtracellularProperties complex type.
+
+
ExtracellularProperties() - Constructor for class org.neuroml.model.ExtracellularProperties
+
 
+
ExtracellularPropertiesLocal - Class in org.neuroml.model
+
+
Java class for ExtracellularPropertiesLocal complex type.
+
+
ExtracellularPropertiesLocal() - Constructor for class org.neuroml.model.ExtracellularPropertiesLocal
+
 
+
+

F

+
+
FALSE - Enum constant in enum org.neuroml.model.TrueOrFalse
+
 
+
finishAmplitude - Variable in class org.neuroml.model.RampGenerator
+
 
+
finishAmplitude - Variable in class org.neuroml.model.RampGeneratorDL
+
 
+
fitzHughNagumo1969Cell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
FitzHughNagumo1969Cell - Class in org.neuroml.model
+
+
The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
+
+
FitzHughNagumo1969Cell() - Constructor for class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
fitzHughNagumoCell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
FitzHughNagumoCell - Class in org.neuroml.model
+
+
Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
+
+
FitzHughNagumoCell() - Constructor for class org.neuroml.model.FitzHughNagumoCell
+
 
+
fixedFactorConcentrationModel - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
FixedFactorConcentrationModel - Class in org.neuroml.model
+
+
Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
+
+
FixedFactorConcentrationModel() - Constructor for class org.neuroml.model.FixedFactorConcentrationModel
+
 
+
fixedQ10 - Variable in class org.neuroml.model.Q10Settings
+
 
+
forwardRate - Variable in class org.neuroml.model.GateHHRates
+
 
+
forwardRate - Variable in class org.neuroml.model.GateHHRatesInf
+
 
+
forwardRate - Variable in class org.neuroml.model.GateHHRatesTau
+
 
+
forwardRate - Variable in class org.neuroml.model.GateHHRatesTauInf
+
 
+
forwardRate - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
ForwardTransition - Class in org.neuroml.model
+
+
A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
+
+
ForwardTransition() - Constructor for class org.neuroml.model.ForwardTransition
+
 
+
forwardTransitionAndReverseTransitionOrTauInfTransition - Variable in class org.neuroml.model.GateKS
+
 
+
fractionalConductance - Variable in class org.neuroml.model.GateFractionalSubgate
+
 
+
fractionAlong - Variable in class org.neuroml.model.Input
+
 
+
fractionAlong - Variable in class org.neuroml.model.SegmentParent
+
 
+
from - Variable in class org.neuroml.model.ForwardTransition
+
 
+
from - Variable in class org.neuroml.model.Path
+
 
+
from - Variable in class org.neuroml.model.ReverseTransition
+
 
+
from - Variable in class org.neuroml.model.SubTree
+
 
+
from - Variable in class org.neuroml.model.SynapticConnection
+
 
+
from - Variable in class org.neuroml.model.TauInfTransition
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.AllowedSpaces
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.BlockTypes
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.ChannelTypes
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.GateTypes
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.Metric
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.NetworkTypes
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.PlasticityTypes
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.PopulationTypes
+
 
+
fromValue(String) - Static method in enum org.neuroml.model.TrueOrFalse
+
 
+
+

G

+
+
gAmpa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
GAP_JUNCTION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
gapJunction - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
GapJunction - Class in org.neuroml.model
+
+
Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance
+
+
GapJunction() - Constructor for class org.neuroml.model.GapJunction
+
 
+
gate - Variable in class org.neuroml.model.IonChannel
+
 
+
GATE_FRACTIONAL - Enum constant in enum org.neuroml.model.GateTypes
+
 
+
GATE_H_HRATES - Enum constant in enum org.neuroml.model.GateTypes
+
 
+
GATE_H_HRATES_INF - Enum constant in enum org.neuroml.model.GateTypes
+
 
+
GATE_H_HRATES_TAU - Enum constant in enum org.neuroml.model.GateTypes
+
 
+
GATE_H_HRATES_TAU_INF - Enum constant in enum org.neuroml.model.GateTypes
+
 
+
GATE_H_HTAU_INF - Enum constant in enum org.neuroml.model.GateTypes
+
 
+
GATE_HH_INSTANTANEOUS - Enum constant in enum org.neuroml.model.GateTypes
+
 
+
GATE_KS - Enum constant in enum org.neuroml.model.GateTypes
+
 
+
gateFractional - Variable in class org.neuroml.model.IonChannel
+
 
+
GateFractional - Class in org.neuroml.model
+
+
Gate composed of subgates contributing with fractional conductance + \n + :param instances: + :type instances: none
+
+
GateFractional() - Constructor for class org.neuroml.model.GateFractional
+
 
+
GateFractionalSubgate - Class in org.neuroml.model
+
+
Java class for GateFractionalSubgate complex type.
+
+
GateFractionalSubgate() - Constructor for class org.neuroml.model.GateFractionalSubgate
+
 
+
gateHHInstantaneous - Variable in class org.neuroml.model.IonChannel
+
 
+
GateHHInstantaneous - Class in org.neuroml.model
+
+
Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value + \n + :param instances: + :type instances: none
+
+
GateHHInstantaneous() - Constructor for class org.neuroml.model.GateHHInstantaneous
+
 
+
gateHHrates - Variable in class org.neuroml.model.IonChannel
+
 
+
GateHHRates - Class in org.neuroml.model
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHRates() - Constructor for class org.neuroml.model.GateHHRates
+
 
+
gateHHratesInf - Variable in class org.neuroml.model.IonChannel
+
 
+
GateHHRatesInf - Class in org.neuroml.model
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHRatesInf() - Constructor for class org.neuroml.model.GateHHRatesInf
+
 
+
gateHHratesTau - Variable in class org.neuroml.model.IonChannel
+
 
+
GateHHRatesTau - Class in org.neuroml.model
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHRatesTau() - Constructor for class org.neuroml.model.GateHHRatesTau
+
 
+
gateHHratesTauInf - Variable in class org.neuroml.model.IonChannel
+
 
+
GateHHRatesTauInf - Class in org.neuroml.model
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHRatesTauInf() - Constructor for class org.neuroml.model.GateHHRatesTauInf
+
 
+
gateHHtauInf - Variable in class org.neuroml.model.IonChannel
+
 
+
GateHHTauInf - Class in org.neuroml.model
+
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
+
+
GateHHTauInf() - Constructor for class org.neuroml.model.GateHHTauInf
+
 
+
GateHHUndetermined - Class in org.neuroml.model
+
+
Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc.
+
+
GateHHUndetermined() - Constructor for class org.neuroml.model.GateHHUndetermined
+
 
+
gateKS - Variable in class org.neuroml.model.IonChannelKS
+
 
+
GateKS - Class in org.neuroml.model
+
+
A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param instances: + :type instances: none
+
+
GateKS() - Constructor for class org.neuroml.model.GateKS
+
 
+
GateTypes - Enum in org.neuroml.model
+
+
Java class for gateTypes.
+
+
gbarK - Variable in class org.neuroml.model.HHCondExp
+
 
+
gbarNa - Variable in class org.neuroml.model.HHCondExp
+
 
+
gbase - Variable in class org.neuroml.model.BaseConductanceBasedSynapse
+
 
+
gbase1 - Variable in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
 
+
gbase2 - Variable in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
 
+
gc - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
gCa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
getA() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the a property.
+
+
getA() - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Gets the value of the a property.
+
+
getA() - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Gets the value of the a property.
+
+
getA() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the a property.
+
+
getA() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the a property.
+
+
getA() - Method in class org.neuroml.model.IzhikevichCell
+
+
Gets the value of the a property.
+
+
getActive() - Method in class org.neuroml.model.VoltageClampTriple
+
+
Gets the value of the active property.
+
+
getAdExIaFCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the adExIaFCell property.
+
+
getAllStandaloneElements(NeuroMLDocument) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
getAlphac() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the alphac property.
+
+
getAlphaCondSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the alphaCondSynapse property.
+
+
getAlphaCurrentSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the alphaCurrentSynapse property.
+
+
getAlphaCurrSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the alphaCurrSynapse property.
+
+
getAlphaSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the alphaSynapse property.
+
+
getAmplitude() - Method in class org.neuroml.model.PulseGenerator
+
+
Gets the value of the amplitude property.
+
+
getAmplitude() - Method in class org.neuroml.model.PulseGeneratorDL
+
+
Gets the value of the amplitude property.
+
+
getAmplitude() - Method in class org.neuroml.model.SineGenerator
+
+
Gets the value of the amplitude property.
+
+
getAmplitude() - Method in class org.neuroml.model.SineGeneratorDL
+
+
Gets the value of the amplitude property.
+
+
getAnnotation() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the annotation property.
+
+
getAnnotation() - Method in class org.neuroml.model.Standalone
+
+
Gets the value of the annotation property.
+
+
getAny() - Method in class org.neuroml.model.Annotation
+
+
Gets the value of the any property.
+
+
getAny() - Method in class org.neuroml.model.CellSet
+
+
Gets the value of the any property.
+
+
getAny() - Method in class org.neuroml.model.ForwardTransition
+
+
Gets the value of the any property.
+
+
getAny() - Method in class org.neuroml.model.ReactionScheme
+
+
Gets the value of the any property.
+
+
getAny() - Method in class org.neuroml.model.Region
+
+
Gets the value of the any property.
+
+
getAny() - Method in class org.neuroml.model.ReverseTransition
+
+
Gets the value of the any property.
+
+
getAverageRate() - Method in class org.neuroml.model.PoissonFiringSynapse
+
+
Gets the value of the averageRate property.
+
+
getAverageRate() - Method in class org.neuroml.model.SpikeGeneratorPoisson
+
+
Gets the value of the averageRate property.
+
+
getAverageRate() - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Gets the value of the averageRate property.
+
+
getB() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the b property.
+
+
getB() - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Gets the value of the b property.
+
+
getB() - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Gets the value of the b property.
+
+
getB() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the b property.
+
+
getB() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the b property.
+
+
getB() - Method in class org.neuroml.model.IzhikevichCell
+
+
Gets the value of the b property.
+
+
getBaseCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the baseCell property.
+
+
getBasedOn() - Method in class org.neuroml.model.Space
+
+
Gets the value of the basedOn property.
+
+
getBaselineAmplitude() - Method in class org.neuroml.model.RampGenerator
+
+
Gets the value of the baselineAmplitude property.
+
+
getBaselineAmplitude() - Method in class org.neuroml.model.RampGeneratorDL
+
+
Gets the value of the baselineAmplitude property.
+
+
getBetac() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the betac property.
+
+
getBiophysicalProperties() - Method in class org.neuroml.model.Cell
+
+
Gets the value of the biophysicalProperties property.
+
+
getBiophysicalProperties() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the biophysicalProperties property.
+
+
getBiophysicalProperties2CaPools() - Method in class org.neuroml.model.Cell2CaPools
+
+
Gets the value of the biophysicalProperties2CaPools property.
+
+
getBiophysicalPropertiesAttr() - Method in class org.neuroml.model.Cell
+
+
Gets the value of the biophysicalPropertiesAttr property.
+
+
getBlockConcentration() - Method in class org.neuroml.model.BlockMechanism
+
+
Gets the value of the blockConcentration property.
+
+
getBlockingPlasticSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the blockingPlasticSynapse property.
+
+
getBlockMechanism() - Method in class org.neuroml.model.BlockingPlasticSynapse
+
+
Gets the value of the blockMechanism property.
+
+
getC() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the c property.
+
+
getC() - Method in class org.neuroml.model.IafCell
+
+
Gets the value of the c property.
+
+
getC() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the c property.
+
+
getC() - Method in class org.neuroml.model.IzhikevichCell
+
+
Gets the value of the c property.
+
+
getCap() - Method in class org.neuroml.model.BaseCellMembPotCap
+
+
Gets the value of the cap property.
+
+
getCase() - Method in class org.neuroml.model.ConditionalDerivedVariable
+
+
Gets the value of the case property.
+
+
getCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the cell property.
+
+
getCell2CaPools() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the cell2CaPools property.
+
+
getCellSet() - Method in class org.neuroml.model.Network
+
+
Gets the value of the cellSet property.
+
+
getChannelDensity() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelDensity property.
+
+
getChannelDensityGHK() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelDensityGHK property.
+
+
getChannelDensityGHK2() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelDensityGHK2 property.
+
+
getChannelDensityNernst() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelDensityNernst property.
+
+
getChannelDensityNernstCa2() - Method in class org.neuroml.model.MembraneProperties2CaPools
+
+
Gets the value of the channelDensityNernstCa2 property.
+
+
getChannelDensityNonUniform() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelDensityNonUniform property.
+
+
getChannelDensityNonUniformGHK() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelDensityNonUniformGHK property.
+
+
getChannelDensityNonUniformNernst() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelDensityNonUniformNernst property.
+
+
getChannelDensityVShift() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelDensityVShift property.
+
+
getChannelPopulation() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the channelPopulation property.
+
+
getClosedState() - Method in class org.neuroml.model.GateKS
+
+
Gets the value of the closedState property.
+
+
getCm() - Method in class org.neuroml.model.BasePyNNCell
+
+
Gets the value of the cm property.
+
+
getCm() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the cm property.
+
+
getComponent() - Method in class org.neuroml.model.InputList
+
+
Gets the value of the component property.
+
+
getComponent() - Method in class org.neuroml.model.Population
+
+
Gets the value of the component property.
+
+
getComponentType() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the componentType property.
+
+
getCompoundInput() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the compoundInput property.
+
+
getCompoundInputDL() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the compoundInputDL property.
+
+
getConcentrationModel() - Method in class org.neuroml.model.Species
+
+
Gets the value of the concentrationModel property.
+
+
getCondDensity() - Method in class org.neuroml.model.ChannelDensity
+
+
Gets the value of the condDensity property.
+
+
getCondDensity() - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Gets the value of the condDensity property.
+
+
getCondDensity() - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Gets the value of the condDensity property.
+
+
getCondition() - Method in class org.neuroml.model.Case
+
+
Gets the value of the condition property.
+
+
getConditionalDerivedVariable() - Method in class org.neuroml.model.Dynamics
+
+
Gets the value of the conditionalDerivedVariable property.
+
+
getConditioningVoltage() - Method in class org.neuroml.model.VoltageClampTriple
+
+
Gets the value of the conditioningVoltage property.
+
+
getConductance() - Method in class org.neuroml.model.GapJunction
+
+
Gets the value of the conductance property.
+
+
getConductance() - Method in class org.neuroml.model.GradedSynapse
+
+
Gets the value of the conductance property.
+
+
getConductance() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the conductance property.
+
+
getConductance() - Method in class org.neuroml.model.IonChannelKS
+
+
Gets the value of the conductance property.
+
+
getConductance() - Method in class org.neuroml.model.LinearGradedSynapse
+
+
Gets the value of the conductance property.
+
+
getConnection() - Method in class org.neuroml.model.Projection
+
+
Gets the value of the connection property.
+
+
getConnection(String, int) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getConnectionWD() - Method in class org.neuroml.model.Projection
+
+
Gets the value of the connectionWD property.
+
+
getConstant() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the constant property.
+
+
getContinuousConnection() - Method in class org.neuroml.model.ContinuousProjection
+
+
Gets the value of the continuousConnection property.
+
+
getContinuousConnectionInstance() - Method in class org.neuroml.model.ContinuousProjection
+
+
Gets the value of the continuousConnectionInstance property.
+
+
getContinuousConnectionInstanceW() - Method in class org.neuroml.model.ContinuousProjection
+
+
Gets the value of the continuousConnectionInstanceW property.
+
+
getContinuousProjection() - Method in class org.neuroml.model.Network
+
+
Gets the value of the continuousProjection property.
+
+
getD() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the d property.
+
+
getD() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the d property.
+
+
getD() - Method in class org.neuroml.model.IzhikevichCell
+
+
Gets the value of the d property.
+
+
getDecayConstant() - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
+
Gets the value of the decayConstant property.
+
+
getDecayConstant() - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
+
Gets the value of the decayConstant property.
+
+
getDecayingPoolConcentrationModel() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the decayingPoolConcentrationModel property.
+
+
getDefaultValue() - Method in class org.neuroml.model.LEMSProperty
+
+
Gets the value of the defaultValue property.
+
+
getDelay() - Method in class org.neuroml.model.ConnectionWD
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.PulseGenerator
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.PulseGeneratorDL
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.RampGenerator
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.RampGeneratorDL
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.SineGenerator
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.SineGeneratorDL
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.VoltageClamp
+
+
Gets the value of the delay property.
+
+
getDelay() - Method in class org.neuroml.model.VoltageClampTriple
+
+
Gets the value of the delay property.
+
+
getDelT() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the delT property.
+
+
getDelta() - Method in class org.neuroml.model.GradedSynapse
+
+
Gets the value of the delta property.
+
+
getDeltaT() - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Gets the value of the deltaT property.
+
+
getDerivedParameter() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the derivedParameter property.
+
+
getDerivedVariable() - Method in class org.neuroml.model.Dynamics
+
+
Gets the value of the derivedVariable property.
+
+
getDescription() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the description property.
+
+
getDescription() - Method in class org.neuroml.model.Constant
+
+
Gets the value of the description property.
+
+
getDescription() - Method in class org.neuroml.model.Exposure
+
+
Gets the value of the description property.
+
+
getDescription() - Method in class org.neuroml.model.NamedDimensionalType
+
+
Gets the value of the description property.
+
+
getDescription() - Method in class org.neuroml.model.NamedDimensionalVariable
+
+
Gets the value of the description property.
+
+
getDestination() - Method in class org.neuroml.model.ExplicitInput
+
+
Gets the value of the destination property.
+
+
getDestination() - Method in class org.neuroml.model.Input
+
+
Gets the value of the destination property.
+
+
getDestination() - Method in class org.neuroml.model.SynapticConnection
+
+
Gets the value of the destination property.
+
+
getDiameter() - Method in class org.neuroml.model.Point3DWithDiam
+
+
Gets the value of the diameter property.
+
+
getDimension() - Method in class org.neuroml.model.Constant
+
+
Gets the value of the dimension property.
+
+
getDimension() - Method in class org.neuroml.model.Exposure
+
+
Gets the value of the dimension property.
+
+
getDimension() - Method in class org.neuroml.model.NamedDimensionalType
+
+
Gets the value of the dimension property.
+
+
getDimension() - Method in class org.neuroml.model.NamedDimensionalVariable
+
+
Gets the value of the dimension property.
+
+
getDistal() - Method in class org.neuroml.model.InhomogeneousParameter
+
+
Gets the value of the distal property.
+
+
getDistal() - Method in class org.neuroml.model.Segment
+
+
Gets the value of the distal property.
+
+
getDoubleSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the doubleSynapse property.
+
+
getDuration() - Method in class org.neuroml.model.PulseGenerator
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.PulseGeneratorDL
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.RampGenerator
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.RampGeneratorDL
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.SineGenerator
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.SineGeneratorDL
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.SpikeSourcePoisson
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.VoltageClamp
+
+
Gets the value of the duration property.
+
+
getDuration() - Method in class org.neuroml.model.VoltageClampTriple
+
+
Gets the value of the duration property.
+
+
getDynamics() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the dynamics property.
+
+
getECa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the eCa property.
+
+
getEIFCondAlphaIsfaIsta() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the eifCondAlphaIsfaIsta property.
+
+
getEIFCondExpIsfaIsta() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the eifCondExpIsfaIsta property.
+
+
getEK() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the ek property.
+
+
getEL() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the el property.
+
+
getEL() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the el property.
+
+
getElectricalConnection() - Method in class org.neuroml.model.ElectricalProjection
+
+
Gets the value of the electricalConnection property.
+
+
getElectricalConnectionInstance() - Method in class org.neuroml.model.ElectricalProjection
+
+
Gets the value of the electricalConnectionInstance property.
+
+
getElectricalConnectionInstanceW() - Method in class org.neuroml.model.ElectricalProjection
+
+
Gets the value of the electricalConnectionInstanceW property.
+
+
getElectricalProjection() - Method in class org.neuroml.model.Network
+
+
Gets the value of the electricalProjection property.
+
+
getENa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the eNa property.
+
+
getErev() - Method in class org.neuroml.model.BaseConductanceBasedSynapse
+
+
Gets the value of the erev property.
+
+
getErev() - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
+
Gets the value of the erev property.
+
+
getErev() - Method in class org.neuroml.model.ChannelDensity
+
+
Gets the value of the erev property.
+
+
getErev() - Method in class org.neuroml.model.ChannelDensityNonUniform
+
+
Gets the value of the erev property.
+
+
getErev() - Method in class org.neuroml.model.ChannelPopulation
+
+
Gets the value of the erev property.
+
+
getErev() - Method in class org.neuroml.model.GradedSynapse
+
+
Gets the value of the erev property.
+
+
getERev() - Method in class org.neuroml.model.AlphaCondSynapse
+
+
Gets the value of the eRev property.
+
+
getERev() - Method in class org.neuroml.model.ExpCondSynapse
+
+
Gets the value of the eRev property.
+
+
getERevE() - Method in class org.neuroml.model.BasePyNNIaFCondCell
+
+
Gets the value of the eRevE property.
+
+
getERevE() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the eRevE property.
+
+
getERevI() - Method in class org.neuroml.model.BasePyNNIaFCondCell
+
+
Gets the value of the eRevI property.
+
+
getERevI() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the eRevI property.
+
+
getERevK() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the eRevK property.
+
+
getERevLeak() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the eRevLeak property.
+
+
getERevNa() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the eRevNa property.
+
+
getEventOut() - Method in class org.neuroml.model.OnCondition
+
+
Gets the value of the eventOut property.
+
+
getEventOut() - Method in class org.neuroml.model.OnEvent
+
+
Gets the value of the eventOut property.
+
+
getExpCondSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the expCondSynapse property.
+
+
getExpCurrSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the expCurrSynapse property.
+
+
getExperimentalTemp() - Method in class org.neuroml.model.Q10ConductanceScaling
+
+
Gets the value of the experimentalTemp property.
+
+
getExperimentalTemp() - Method in class org.neuroml.model.Q10Settings
+
+
Gets the value of the experimentalTemp property.
+
+
getExplicitInput() - Method in class org.neuroml.model.Network
+
+
Gets the value of the explicitInput property.
+
+
getExpOneSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the expOneSynapse property.
+
+
getExposure() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the exposure property.
+
+
getExposure() - Method in class org.neuroml.model.NamedDimensionalVariable
+
+
Gets the value of the exposure property.
+
+
getExpThreeSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the expThreeSynapse property.
+
+
getExpTwoSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the expTwoSynapse property.
+
+
getExtends() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the extends property.
+
+
getExtracellularProperties() - Method in class org.neuroml.model.BiophysicalProperties
+
+
Gets the value of the extracellularProperties property.
+
+
getExtracellularProperties() - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
+
Gets the value of the extracellularProperties property.
+
+
getExtracellularProperties() - Method in class org.neuroml.model.Network
+
+
Gets the value of the extracellularProperties property.
+
+
getExtracellularProperties() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the extracellularProperties property.
+
+
getExtracellularProperties() - Method in class org.neuroml.model.Population
+
+
Gets the value of the extracellularProperties property.
+
+
getFinishAmplitude() - Method in class org.neuroml.model.RampGenerator
+
+
Gets the value of the finishAmplitude property.
+
+
getFinishAmplitude() - Method in class org.neuroml.model.RampGeneratorDL
+
+
Gets the value of the finishAmplitude property.
+
+
getFirstStringValAttr(ArrayList<Attribute>, String) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
getFitzHughNagumo1969Cell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the fitzHughNagumo1969Cell property.
+
+
getFitzHughNagumoCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the fitzHughNagumoCell property.
+
+
getFixedFactorConcentrationModel() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the fixedFactorConcentrationModel property.
+
+
getFixedQ10() - Method in class org.neuroml.model.Q10Settings
+
+
Gets the value of the fixedQ10 property.
+
+
getFormattedUnits(String) - Static method in class org.neuroml.model.util.UnitsFormatterUtils
+
 
+
getForwardRate() - Method in class org.neuroml.model.GateHHRates
+
+
Gets the value of the forwardRate property.
+
+
getForwardRate() - Method in class org.neuroml.model.GateHHRatesInf
+
+
Gets the value of the forwardRate property.
+
+
getForwardRate() - Method in class org.neuroml.model.GateHHRatesTau
+
+
Gets the value of the forwardRate property.
+
+
getForwardRate() - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Gets the value of the forwardRate property.
+
+
getForwardRate() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the forwardRate property.
+
+
getForwardTransitionAndReverseTransitionOrTauInfTransition() - Method in class org.neuroml.model.GateKS
+
+
Gets the value of the forwardTransitionAndReverseTransitionOrTauInfTransition property.
+
+
getFractionalConductance() - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Gets the value of the fractionalConductance property.
+
+
getFractionAlong() - Method in class org.neuroml.model.Input
+
+
Gets the value of the fractionAlong property.
+
+
getFractionAlong() - Method in class org.neuroml.model.SegmentParent
+
+
Gets the value of the fractionAlong property.
+
+
getFractionAlong(Input) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
getFractionAlongSegGroupLength(Cell, String, int, float) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getFrom() - Method in class org.neuroml.model.ForwardTransition
+
+
Gets the value of the from property.
+
+
getFrom() - Method in class org.neuroml.model.Path
+
+
Gets the value of the from property.
+
+
getFrom() - Method in class org.neuroml.model.ReverseTransition
+
+
Gets the value of the from property.
+
+
getFrom() - Method in class org.neuroml.model.SubTree
+
+
Gets the value of the from property.
+
+
getFrom() - Method in class org.neuroml.model.SynapticConnection
+
+
Gets the value of the from property.
+
+
getFrom() - Method in class org.neuroml.model.TauInfTransition
+
+
Gets the value of the from property.
+
+
getGAmpa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gAmpa property.
+
+
getGapJunction() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the gapJunction property.
+
+
getGate() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the gate property.
+
+
getGateFractional() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the gateFractional property.
+
+
getGateHHInstantaneous() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the gateHHInstantaneous property.
+
+
getGateHHrates() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the gateHHrates property.
+
+
getGateHHratesInf() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the gateHHratesInf property.
+
+
getGateHHratesTau() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the gateHHratesTau property.
+
+
getGateHHratesTauInf() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the gateHHratesTauInf property.
+
+
getGateHHtauInf() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the gateHHtauInf property.
+
+
getGateKS() - Method in class org.neuroml.model.IonChannelKS
+
+
Gets the value of the gateKS property.
+
+
getGbarK() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the gbarK property.
+
+
getGbarNa() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the gbarNa property.
+
+
getGbase() - Method in class org.neuroml.model.BaseConductanceBasedSynapse
+
+
Gets the value of the gbase property.
+
+
getGbase1() - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
+
Gets the value of the gbase1 property.
+
+
getGbase2() - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
+
Gets the value of the gbase2 property.
+
+
getGc() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gc property.
+
+
getGCa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gCa property.
+
+
getGKahp() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gKahp property.
+
+
getGKC() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gkc property.
+
+
getGKdr() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gKdr property.
+
+
getGL() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the gl property.
+
+
getGLd() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gLd property.
+
+
getGLeak() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the gLeak property.
+
+
getGLs() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gLs property.
+
+
getGNa() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gNa property.
+
+
getGNmda() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the gNmda property.
+
+
getGradedSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the gradedSynapse property.
+
+
getGrid() - Method in class org.neuroml.model.Layout
+
+
Gets the value of the grid property.
+
+
getHHCondExp() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the hhCondExp property.
+
+
getHindmarshRose1984Cell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the hindmarshRose1984Cell property.
+
+
getHref() - Method in class org.neuroml.model.IncludeType
+
+
Gets the value of the href property.
+
+
getI() - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Gets the value of the i property.
+
+
getI() - Method in class org.neuroml.model.FitzHughNagumoCell
+
+
Gets the value of the i property.
+
+
getI() - Method in class org.neuroml.model.Instance
+
+
Gets the value of the i property.
+
+
getIafCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the iafCell property.
+
+
getIafRefCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the iafRefCell property.
+
+
getIafTauCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the iafTauCell property.
+
+
getIafTauRefCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the iafTauRefCell property.
+
+
getIbase() - Method in class org.neuroml.model.AlphaCurrentSynapse
+
+
Gets the value of the ibase property.
+
+
getId() - Method in class org.neuroml.model.Base
+
+
Gets the value of the id property.
+
+
getId() - Method in class org.neuroml.model.BaseNonNegativeIntegerId
+
+
Gets the value of the id property.
+
+
getId() - Method in class org.neuroml.model.Instance
+
+
Gets the value of the id property.
+
+
getIDend() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the iDend property.
+
+
getIdsVsSegments(Cell) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getIFCondAlpha() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the ifCondAlpha property.
+
+
getIFCondExp() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the ifCondExp property.
+
+
getIFCurrAlpha() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the ifCurrAlpha property.
+
+
getIFCurrExp() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the ifCurrExp property.
+
+
getInclude() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the include property.
+
+
getInclude() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the include property.
+
+
getInhomogeneousParameter() - Method in class org.neuroml.model.InhomogeneousValue
+
+
Gets the value of the inhomogeneousParameter property.
+
+
getInhomogeneousParameter() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the inhomogeneousParameter property.
+
+
getInhomogeneousValue() - Method in class org.neuroml.model.VariableParameter
+
+
Gets the value of the inhomogeneousValue property.
+
+
getInitial() - Method in class org.neuroml.model.Regime
+
+
Gets the value of the initial property.
+
+
getInitialConcentration() - Method in class org.neuroml.model.Species
+
+
Gets the value of the initialConcentration property.
+
+
getInitialExtConcentration() - Method in class org.neuroml.model.Species
+
+
Gets the value of the initialExtConcentration property.
+
+
getInitMembPotential() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the initMembPotential property.
+
+
getInitReleaseProb() - Method in class org.neuroml.model.PlasticityMechanism
+
+
Gets the value of the initReleaseProb property.
+
+
getInput() - Method in class org.neuroml.model.ExplicitInput
+
+
Gets the value of the input property.
+
+
getInput() - Method in class org.neuroml.model.InputList
+
+
Gets the value of the input property.
+
+
getInputDatatype(H5File) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
 
+
getInputList() - Method in class org.neuroml.model.Network
+
+
Gets the value of the inputList property.
+
+
getInputW() - Method in class org.neuroml.model.InputList
+
+
Gets the value of the inputW property.
+
+
getInstance() - Method in class org.neuroml.model.Population
+
+
Gets the value of the instance property.
+
+
getInstanceRequirement() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the instanceRequirement property.
+
+
getInstances() - Method in class org.neuroml.model.GateFractional
+
+
Gets the value of the instances property.
+
+
getInstances() - Method in class org.neuroml.model.GateHHInstantaneous
+
+
Gets the value of the instances property.
+
+
getInstances() - Method in class org.neuroml.model.GateHHRates
+
+
Gets the value of the instances property.
+
+
getInstances() - Method in class org.neuroml.model.GateHHRatesInf
+
+
Gets the value of the instances property.
+
+
getInstances() - Method in class org.neuroml.model.GateHHRatesTau
+
+
Gets the value of the instances property.
+
+
getInstances() - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Gets the value of the instances property.
+
+
getInstances() - Method in class org.neuroml.model.GateHHTauInf
+
+
Gets the value of the instances property.
+
+
getInstances() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the instances property.
+
+
getInstances() - Method in class org.neuroml.model.GateKS
+
+
Gets the value of the instances property.
+
+
getIntracellularProperties() - Method in class org.neuroml.model.BiophysicalProperties
+
+
Gets the value of the intracellularProperties property.
+
+
getIntracellularProperties() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the intracellularProperties property.
+
+
getIntracellularProperties2CaPools() - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
+
Gets the value of the intracellularProperties2CaPools property.
+
+
getIOffset() - Method in class org.neuroml.model.BasePyNNCell
+
+
Gets the value of the iOffset property.
+
+
getIon() - Method in class org.neuroml.model.ChannelDensity
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.ChannelDensityNonUniform
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.ChannelPopulation
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
+
Gets the value of the ion property.
+
+
getIon() - Method in class org.neuroml.model.Species
+
+
Gets the value of the ion property.
+
+
getIonChannel() - Method in class org.neuroml.model.ChannelDensity
+
+
Gets the value of the ionChannel property.
+
+
getIonChannel() - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Gets the value of the ionChannel property.
+
+
getIonChannel() - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Gets the value of the ionChannel property.
+
+
getIonChannel() - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Gets the value of the ionChannel property.
+
+
getIonChannel() - Method in class org.neuroml.model.ChannelDensityNonUniform
+
+
Gets the value of the ionChannel property.
+
+
getIonChannel() - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
+
+
Gets the value of the ionChannel property.
+
+
getIonChannel() - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
+
+
Gets the value of the ionChannel property.
+
+
getIonChannel() - Method in class org.neuroml.model.ChannelPopulation
+
+
Gets the value of the ionChannel property.
+
+
getIonChannel() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the ionChannel property.
+
+
getIonChannelHH() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the ionChannelHH property.
+
+
getIonChannelKS() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the ionChannelKS property.
+
+
getIonChannelVShift() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the ionChannelVShift property.
+
+
getISoma() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the iSoma property.
+
+
getIzhikevich2007Cell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the izhikevich2007Cell property.
+
+
getIzhikevichCell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the izhikevichCell property.
+
+
getJ() - Method in class org.neuroml.model.Instance
+
+
Gets the value of the j property.
+
+
getK() - Method in class org.neuroml.model.GradedSynapse
+
+
Gets the value of the k property.
+
+
getK() - Method in class org.neuroml.model.Instance
+
+
Gets the value of the k property.
+
+
getK() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the k property.
+
+
getLayout() - Method in class org.neuroml.model.Population
+
+
Gets the value of the layout property.
+
+
getLeakConductance() - Method in class org.neuroml.model.IafCell
+
+
Gets the value of the leakConductance property.
+
+
getLeakReversal() - Method in class org.neuroml.model.IafCell
+
+
Gets the value of the leakReversal property.
+
+
getLeakReversal() - Method in class org.neuroml.model.IafTauCell
+
+
Gets the value of the leakReversal property.
+
+
getLinearGradedSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the linearGradedSynapse property.
+
+
getLocation() - Method in class org.neuroml.model.Instance
+
+
Gets the value of the location property.
+
+
getLocation(String, int, boolean) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getMaxISI() - Method in class org.neuroml.model.SpikeGeneratorRandom
+
+
Gets the value of the maxISI property.
+
+
getMember() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the member property.
+
+
getMembraneProperties() - Method in class org.neuroml.model.BiophysicalProperties
+
+
Gets the value of the membraneProperties property.
+
+
getMembraneProperties2CaPools() - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
+
Gets the value of the membraneProperties2CaPools property.
+
+
getMetaid() - Method in class org.neuroml.model.Standalone
+
+
Gets the value of the metaid property.
+
+
getMetric() - Method in class org.neuroml.model.InhomogeneousParameter
+
+
Gets the value of the metric property.
+
+
getMidpoint() - Method in class org.neuroml.model.HHRate
+
+
Gets the value of the midpoint property.
+
+
getMidpoint() - Method in class org.neuroml.model.HHTime
+
+
Gets the value of the midpoint property.
+
+
getMidpoint() - Method in class org.neuroml.model.HHVariable
+
+
Gets the value of the midpoint property.
+
+
getMinimumISI() - Method in class org.neuroml.model.SpikeGeneratorRefPoisson
+
+
Gets the value of the minimumISI property.
+
+
getMinISI() - Method in class org.neuroml.model.SpikeGeneratorRandom
+
+
Gets the value of the minISI property.
+
+
getMorphology() - Method in class org.neuroml.model.Cell
+
+
Gets the value of the morphology property.
+
+
getMorphology() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the morphology property.
+
+
getMorphologyAttr() - Method in class org.neuroml.model.Cell
+
+
Gets the value of the morphologyAttr property.
+
+
getName() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the name property.
+
+
getName() - Method in class org.neuroml.model.Constant
+
+
Gets the value of the name property.
+
+
getName() - Method in class org.neuroml.model.Exposure
+
+
Gets the value of the name property.
+
+
getName() - Method in class org.neuroml.model.InstanceRequirement
+
+
Gets the value of the name property.
+
+
getName() - Method in class org.neuroml.model.NamedDimensionalType
+
+
Gets the value of the name property.
+
+
getName() - Method in class org.neuroml.model.NamedDimensionalVariable
+
+
Gets the value of the name property.
+
+
getName() - Method in class org.neuroml.model.Regime
+
+
Gets the value of the name property.
+
+
getName() - Method in class org.neuroml.model.Segment
+
+
Gets the value of the name property.
+
+
getNamesVsSegmentGroups(Cell) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getNetwork() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the network property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.BaseCell
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.BaseConnection
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.BaseSynapse
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.IonChannelKS
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.IonChannelScalable
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.Network
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.Population
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.Segment
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroLexId() - Method in class org.neuroml.model.SynapticConnection
+
+
Gets the value of the neuroLexId property.
+
+
getNeuroMLDocument() - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getNeuroMLDocument() - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
getNormalizationEnd() - Method in class org.neuroml.model.DistalDetails
+
+
Gets the value of the normalizationEnd property.
+
+
getNotes() - Method in class org.neuroml.model.GateFractional
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateHHInstantaneous
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateHHRates
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateHHRatesInf
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateHHRatesTau
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateHHTauInf
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.GateKS
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the notes property.
+
+
getNotes() - Method in class org.neuroml.model.Standalone
+
+
Gets the value of the notes property.
+
+
getNumber() - Method in class org.neuroml.model.ChannelPopulation
+
+
Gets the value of the number property.
+
+
getNumber() - Method in class org.neuroml.model.RandomLayout
+
+
Gets the value of the number property.
+
+
getNumber() - Method in class org.neuroml.model.UnstructuredLayout
+
+
Gets the value of the number property.
+
+
getNumberConnections(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getOnCondition() - Method in class org.neuroml.model.Dynamics
+
+
Gets the value of the onCondition property.
+
+
getOnCondition() - Method in class org.neuroml.model.Regime
+
+
Gets the value of the onCondition property.
+
+
getOnEntry() - Method in class org.neuroml.model.Regime
+
+
Gets the value of the onEntry property.
+
+
getOnEvent() - Method in class org.neuroml.model.Dynamics
+
+
Gets the value of the onEvent property.
+
+
getOnStart() - Method in class org.neuroml.model.Dynamics
+
+
Gets the value of the onStart property.
+
+
getOpenState() - Method in class org.neuroml.model.GateKS
+
+
Gets the value of the openState property.
+
+
getParameter() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the parameter property.
+
+
getParameter() - Method in class org.neuroml.model.VariableParameter
+
+
Gets the value of the parameter property.
+
+
getParent() - Method in class org.neuroml.model.Segment
+
+
Gets the value of the parent property.
+
+
getPath() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the path property.
+
+
getPeriod() - Method in class org.neuroml.model.SineGenerator
+
+
Gets the value of the period property.
+
+
getPeriod() - Method in class org.neuroml.model.SineGeneratorDL
+
+
Gets the value of the period property.
+
+
getPeriod() - Method in class org.neuroml.model.SpikeGenerator
+
+
Gets the value of the period property.
+
+
getPermeability() - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Gets the value of the permeability property.
+
+
getPhase() - Method in class org.neuroml.model.SineGenerator
+
+
Gets the value of the phase property.
+
+
getPhase() - Method in class org.neuroml.model.SineGeneratorDL
+
+
Gets the value of the phase property.
+
+
getPhi() - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Gets the value of the phi property.
+
+
getPinskyRinzelCA3Cell() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the pinskyRinzelCA3Cell property.
+
+
getPlasticityMechanism() - Method in class org.neuroml.model.BlockingPlasticSynapse
+
+
Gets the value of the plasticityMechanism property.
+
+
getPoissonFiringSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the poissonFiringSynapse property.
+
+
getPopDatatype(H5File) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
 
+
getPopulation() - Method in class org.neuroml.model.InputList
+
+
Gets the value of the population property.
+
+
getPopulation() - Method in class org.neuroml.model.Network
+
+
Gets the value of the population property.
+
+
getPopulationComponent(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getPopulationIds() - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getPopulationSize(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getPopulationType(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getPort() - Method in class org.neuroml.model.EventOut
+
+
Gets the value of the port property.
+
+
getPort() - Method in class org.neuroml.model.OnEvent
+
+
Gets the value of the port property.
+
+
getPostCell() - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Gets the value of the postCell property.
+
+
getPostCellId() - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Gets the value of the postCellId property.
+
+
getPostCellId(BaseConnection) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
getPostComponent() - Method in class org.neuroml.model.ContinuousConnection
+
+
Gets the value of the postComponent property.
+
+
getPostFractionAlong() - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Gets the value of the postFractionAlong property.
+
+
getPostFractionAlong() - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Gets the value of the postFractionAlong property.
+
+
getPostSegment() - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Gets the value of the postSegment property.
+
+
getPostSegmentId() - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Gets the value of the postSegmentId property.
+
+
getPostsynapticPopulation() - Method in class org.neuroml.model.BaseProjection
+
+
Gets the value of the postsynapticPopulation property.
+
+
getPp() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the pp property.
+
+
getPreCell() - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Gets the value of the preCell property.
+
+
getPreCellId() - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Gets the value of the preCellId property.
+
+
getPreCellId(BaseConnection) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
getPreComponent() - Method in class org.neuroml.model.ContinuousConnection
+
+
Gets the value of the preComponent property.
+
+
getPreFractionAlong() - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Gets the value of the preFractionAlong property.
+
+
getPreFractionAlong() - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Gets the value of the preFractionAlong property.
+
+
getPreSegment() - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Gets the value of the preSegment property.
+
+
getPreSegmentId() - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Gets the value of the preSegmentId property.
+
+
getPresynapticPopulation() - Method in class org.neuroml.model.BaseProjection
+
+
Gets the value of the presynapticPopulation property.
+
+
getProjDatatype(H5File) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
 
+
getProjection() - Method in class org.neuroml.model.Network
+
+
Gets the value of the projection property.
+
+
getProjectionIds() - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
getProperty() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the property property.
+
+
getProperty() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the property property.
+
+
getProperty() - Method in class org.neuroml.model.Standalone
+
+
Gets the value of the property property.
+
+
getProximal() - Method in class org.neuroml.model.InhomogeneousParameter
+
+
Gets the value of the proximal property.
+
+
getProximal() - Method in class org.neuroml.model.Segment
+
+
Gets the value of the proximal property.
+
+
getPulseGenerator() - Method in class org.neuroml.model.CompoundInput
+
+
Gets the value of the pulseGenerator property.
+
+
getPulseGenerator() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the pulseGenerator property.
+
+
getPulseGeneratorDL() - Method in class org.neuroml.model.CompoundInputDL
+
+
Gets the value of the pulseGeneratorDL property.
+
+
getPulseGeneratorDL() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the pulseGeneratorDL property.
+
+
getQ10ConductanceScaling() - Method in class org.neuroml.model.IonChannelScalable
+
+
Gets the value of the q10ConductanceScaling property.
+
+
getQ10Factor() - Method in class org.neuroml.model.Q10ConductanceScaling
+
+
Gets the value of the q10Factor property.
+
+
getQ10Factor() - Method in class org.neuroml.model.Q10Settings
+
+
Gets the value of the q10Factor property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateFractional
+
+
Gets the value of the q10Settings property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Gets the value of the q10Settings property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateHHRates
+
+
Gets the value of the q10Settings property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateHHRatesInf
+
+
Gets the value of the q10Settings property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateHHRatesTau
+
+
Gets the value of the q10Settings property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Gets the value of the q10Settings property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateHHTauInf
+
+
Gets the value of the q10Settings property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the q10Settings property.
+
+
getQ10Settings() - Method in class org.neuroml.model.GateKS
+
+
Gets the value of the q10Settings property.
+
+
getQd0() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Gets the value of the qd0 property.
+
+
getR() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the r property.
+
+
getRampGenerator() - Method in class org.neuroml.model.CompoundInput
+
+
Gets the value of the rampGenerator property.
+
+
getRampGenerator() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the rampGenerator property.
+
+
getRampGeneratorDL() - Method in class org.neuroml.model.CompoundInputDL
+
+
Gets the value of the rampGeneratorDL property.
+
+
getRampGeneratorDL() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the rampGeneratorDL property.
+
+
getRandom() - Method in class org.neuroml.model.Layout
+
+
Gets the value of the random property.
+
+
getRate() - Method in class org.neuroml.model.HHRate
+
+
Gets the value of the rate property.
+
+
getRate() - Method in class org.neuroml.model.HHTime
+
+
Gets the value of the rate property.
+
+
getRate() - Method in class org.neuroml.model.HHVariable
+
+
Gets the value of the rate property.
+
+
getRate() - Method in class org.neuroml.model.SpikeSourcePoisson
+
+
Gets the value of the rate property.
+
+
getRefract() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the refract property.
+
+
getRefract() - Method in class org.neuroml.model.IafRefCell
+
+
Gets the value of the refract property.
+
+
getRefract() - Method in class org.neuroml.model.IafTauRefCell
+
+
Gets the value of the refract property.
+
+
getRegime() - Method in class org.neuroml.model.Dynamics
+
+
Gets the value of the regime property.
+
+
getRegime() - Method in class org.neuroml.model.Transition
+
+
Gets the value of the regime property.
+
+
getRegion() - Method in class org.neuroml.model.Network
+
+
Gets the value of the region property.
+
+
getRegion() - Method in class org.neuroml.model.RandomLayout
+
+
Gets the value of the region property.
+
+
getRequirement() - Method in class org.neuroml.model.ComponentType
+
+
Gets the value of the requirement property.
+
+
getReset() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the reset property.
+
+
getReset() - Method in class org.neuroml.model.IafCell
+
+
Gets the value of the reset property.
+
+
getReset() - Method in class org.neuroml.model.IafTauCell
+
+
Gets the value of the reset property.
+
+
getResistivity() - Method in class org.neuroml.model.IntracellularProperties
+
+
Gets the value of the resistivity property.
+
+
getRestingConc() - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
+
Gets the value of the restingConc property.
+
+
getRestingConc() - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
+
Gets the value of the restingConc property.
+
+
getReturnVoltage() - Method in class org.neuroml.model.VoltageClampTriple
+
+
Gets the value of the returnVoltage property.
+
+
getReverseRate() - Method in class org.neuroml.model.GateHHRates
+
+
Gets the value of the reverseRate property.
+
+
getReverseRate() - Method in class org.neuroml.model.GateHHRatesInf
+
+
Gets the value of the reverseRate property.
+
+
getReverseRate() - Method in class org.neuroml.model.GateHHRatesTau
+
+
Gets the value of the reverseRate property.
+
+
getReverseRate() - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Gets the value of the reverseRate property.
+
+
getReverseRate() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the reverseRate property.
+
+
getRho() - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
+
Gets the value of the rho property.
+
+
getRootGroup(H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
getS() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the s property.
+
+
getScale() - Method in class org.neuroml.model.HHRate
+
+
Gets the value of the scale property.
+
+
getScale() - Method in class org.neuroml.model.HHTime
+
+
Gets the value of the scale property.
+
+
getScale() - Method in class org.neuroml.model.HHVariable
+
+
Gets the value of the scale property.
+
+
getScalingConc() - Method in class org.neuroml.model.BlockMechanism
+
+
Gets the value of the scalingConc property.
+
+
getScalingVolt() - Method in class org.neuroml.model.BlockMechanism
+
+
Gets the value of the scalingVolt property.
+
+
getSegment() - Method in class org.neuroml.model.ChannelDensity
+
+
Gets the value of the segment property.
+
+
getSegment() - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Gets the value of the segment property.
+
+
getSegment() - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Gets the value of the segment property.
+
+
getSegment() - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Gets the value of the segment property.
+
+
getSegment() - Method in class org.neuroml.model.ChannelPopulation
+
+
Gets the value of the segment property.
+
+
getSegment() - Method in class org.neuroml.model.Member
+
+
Gets the value of the segment property.
+
+
getSegment() - Method in class org.neuroml.model.Morphology
+
+
Gets the value of the segment property.
+
+
getSegment() - Method in class org.neuroml.model.SegmentEndPoint
+
+
Gets the value of the segment property.
+
+
getSegment() - Method in class org.neuroml.model.SegmentParent
+
+
Gets the value of the segment property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.ChannelDensity
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.ChannelPopulation
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.Include
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.InitMembPotential
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.Morphology
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.Resistivity
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.Species
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.SpecificCapacitance
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.SpikeThresh
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup() - Method in class org.neuroml.model.VariableParameter
+
+
Gets the value of the segmentGroup property.
+
+
getSegmentGroup(Cell, String) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getSegmentGroupsVsSegIds(Cell) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getSegmentId() - Method in class org.neuroml.model.Input
+
+
Gets the value of the segmentId property.
+
+
getSegmentId(Input) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
getSegmentIdsInGroup(LinkedHashMap<String, SegmentGroup>, SegmentGroup) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getSegmentIdsInGroup(Cell, String) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getSegmentsInGroup(Cell, String) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getSegmentsInGroup(Cell, LinkedHashMap<String, SegmentGroup>, SegmentGroup) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getSegmentWithId(Cell, int) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
getSelect() - Method in class org.neuroml.model.CellSet
+
+
Gets the value of the select property.
+
+
getSelect() - Method in class org.neuroml.model.DerivedVariable
+
+
Gets the value of the select property.
+
+
getShellThickness() - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
+
Gets the value of the shellThickness property.
+
+
getSilentSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the silentSynapse property.
+
+
getSimpleAttr(String, String, H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
getSimpleSeriesResistance() - Method in class org.neuroml.model.VoltageClamp
+
+
Gets the value of the simpleSeriesResistance property.
+
+
getSimpleSeriesResistance() - Method in class org.neuroml.model.VoltageClampTriple
+
+
Gets the value of the simpleSeriesResistance property.
+
+
getSineGenerator() - Method in class org.neuroml.model.CompoundInput
+
+
Gets the value of the sineGenerator property.
+
+
getSineGenerator() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the sineGenerator property.
+
+
getSineGeneratorDL() - Method in class org.neuroml.model.CompoundInputDL
+
+
Gets the value of the sineGeneratorDL property.
+
+
getSineGeneratorDL() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the sineGeneratorDL property.
+
+
getSize() - Method in class org.neuroml.model.Population
+
+
Gets the value of the size property.
+
+
getSource() - Method in class org.neuroml.model.ReactionScheme
+
+
Gets the value of the source property.
+
+
getSpace() - Method in class org.neuroml.model.Layout
+
+
Gets the value of the space property.
+
+
getSpace() - Method in class org.neuroml.model.Network
+
+
Gets the value of the space property.
+
+
getSpace() - Method in class org.neuroml.model.Region
+
+
Gets the value of the space property.
+
+
getSpecies() - Method in class org.neuroml.model.BlockMechanism
+
+
Gets the value of the species property.
+
+
getSpecies() - Method in class org.neuroml.model.ExtracellularProperties
+
+
Gets the value of the species property.
+
+
getSpecies() - Method in class org.neuroml.model.ExtracellularPropertiesLocal
+
+
Gets the value of the species property.
+
+
getSpecies() - Method in class org.neuroml.model.IntracellularProperties
+
+
Gets the value of the species property.
+
+
getSpecies() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the species property.
+
+
getSpecies() - Method in class org.neuroml.model.IonChannelKS
+
+
Gets the value of the species property.
+
+
getSpecificCapacitance() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the specificCapacitance property.
+
+
getSpike() - Method in class org.neuroml.model.SpikeArray
+
+
Gets the value of the spike property.
+
+
getSpike() - Method in class org.neuroml.model.TimedSynapticInput
+
+
Gets the value of the spike property.
+
+
getSpikeArray() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the spikeArray property.
+
+
getSpikeGenerator() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the spikeGenerator property.
+
+
getSpikeGeneratorPoisson() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the spikeGeneratorPoisson property.
+
+
getSpikeGeneratorRandom() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the spikeGeneratorRandom property.
+
+
getSpikeGeneratorRefPoisson() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the spikeGeneratorRefPoisson property.
+
+
getSpikeSourcePoisson() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the spikeSourcePoisson property.
+
+
getSpikeTarget() - Method in class org.neuroml.model.PoissonFiringSynapse
+
+
Gets the value of the spikeTarget property.
+
+
getSpikeTarget() - Method in class org.neuroml.model.TimedSynapticInput
+
+
Gets the value of the spikeTarget property.
+
+
getSpikeTarget() - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Gets the value of the spikeTarget property.
+
+
getSpikeThresh() - Method in class org.neuroml.model.MembraneProperties
+
+
Gets the value of the spikeThresh property.
+
+
getStart() - Method in class org.neuroml.model.SpikeSourcePoisson
+
+
Gets the value of the start property.
+
+
getStartAmplitude() - Method in class org.neuroml.model.RampGenerator
+
+
Gets the value of the startAmplitude property.
+
+
getStartAmplitude() - Method in class org.neuroml.model.RampGeneratorDL
+
+
Gets the value of the startAmplitude property.
+
+
getStateAssignment() - Method in class org.neuroml.model.OnCondition
+
+
Gets the value of the stateAssignment property.
+
+
getStateAssignment() - Method in class org.neuroml.model.OnEntry
+
+
Gets the value of the stateAssignment property.
+
+
getStateAssignment() - Method in class org.neuroml.model.OnEvent
+
+
Gets the value of the stateAssignment property.
+
+
getStateAssignment() - Method in class org.neuroml.model.OnStart
+
+
Gets the value of the stateAssignment property.
+
+
getStateVariable() - Method in class org.neuroml.model.Dynamics
+
+
Gets the value of the stateVariable property.
+
+
getSteadyState() - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Gets the value of the steadyState property.
+
+
getSteadyState() - Method in class org.neuroml.model.GateHHInstantaneous
+
+
Gets the value of the steadyState property.
+
+
getSteadyState() - Method in class org.neuroml.model.GateHHRatesInf
+
+
Gets the value of the steadyState property.
+
+
getSteadyState() - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Gets the value of the steadyState property.
+
+
getSteadyState() - Method in class org.neuroml.model.GateHHTauInf
+
+
Gets the value of the steadyState property.
+
+
getSteadyState() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the steadyState property.
+
+
getSteadyState() - Method in class org.neuroml.model.TauInfTransition
+
+
Gets the value of the steadyState property.
+
+
getStructure() - Method in class org.neuroml.model.Space
+
+
Gets the value of the structure property.
+
+
getSubGate() - Method in class org.neuroml.model.GateFractional
+
+
Gets the value of the subGate property.
+
+
getSubGate() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the subGate property.
+
+
getSubTree() - Method in class org.neuroml.model.SegmentGroup
+
+
Gets the value of the subTree property.
+
+
getSynapse() - Method in class org.neuroml.model.ElectricalConnection
+
+
Gets the value of the synapse property.
+
+
getSynapse() - Method in class org.neuroml.model.PoissonFiringSynapse
+
+
Gets the value of the synapse property.
+
+
getSynapse() - Method in class org.neuroml.model.Projection
+
+
Gets the value of the synapse property.
+
+
getSynapse() - Method in class org.neuroml.model.SynapticConnection
+
+
Gets the value of the synapse property.
+
+
getSynapse() - Method in class org.neuroml.model.TimedSynapticInput
+
+
Gets the value of the synapse property.
+
+
getSynapse() - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Gets the value of the synapse property.
+
+
getSynapse1() - Method in class org.neuroml.model.DoubleSynapse
+
+
Gets the value of the synapse1 property.
+
+
getSynapse1Path() - Method in class org.neuroml.model.DoubleSynapse
+
+
Gets the value of the synapse1Path property.
+
+
getSynapse2() - Method in class org.neuroml.model.DoubleSynapse
+
+
Gets the value of the synapse2 property.
+
+
getSynapse2Path() - Method in class org.neuroml.model.DoubleSynapse
+
+
Gets the value of the synapse2Path property.
+
+
getSynapticConnection() - Method in class org.neuroml.model.Network
+
+
Gets the value of the synapticConnection property.
+
+
getTag() - Method in class org.neuroml.model.Property
+
+
Gets the value of the tag property.
+
+
getTarget() - Method in class org.neuroml.model.ExplicitInput
+
+
Gets the value of the target property.
+
+
getTarget() - Method in class org.neuroml.model.Input
+
+
Gets the value of the target property.
+
+
getTargetCellId(Input) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
getTargetVoltage() - Method in class org.neuroml.model.VoltageClamp
+
+
Gets the value of the targetVoltage property.
+
+
getTau() - Method in class org.neuroml.model.AlphaCurrentSynapse
+
+
Gets the value of the tau property.
+
+
getTau() - Method in class org.neuroml.model.AlphaSynapse
+
+
Gets the value of the tau property.
+
+
getTau() - Method in class org.neuroml.model.HHTime
+
+
Gets the value of the tau property.
+
+
getTau() - Method in class org.neuroml.model.IafTauCell
+
+
Gets the value of the tau property.
+
+
getTauDecay() - Method in class org.neuroml.model.ExpOneSynapse
+
+
Gets the value of the tauDecay property.
+
+
getTauDecay() - Method in class org.neuroml.model.ExpTwoSynapse
+
+
Gets the value of the tauDecay property.
+
+
getTauDecay1() - Method in class org.neuroml.model.ExpThreeSynapse
+
+
Gets the value of the tauDecay1 property.
+
+
getTauDecay2() - Method in class org.neuroml.model.ExpThreeSynapse
+
+
Gets the value of the tauDecay2 property.
+
+
getTauFac() - Method in class org.neuroml.model.PlasticityMechanism
+
+
Gets the value of the tauFac property.
+
+
getTauM() - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Gets the value of the tauM property.
+
+
getTauRec() - Method in class org.neuroml.model.PlasticityMechanism
+
+
Gets the value of the tauRec property.
+
+
getTauRefrac() - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Gets the value of the tauRefrac property.
+
+
getTauRise() - Method in class org.neuroml.model.ExpThreeSynapse
+
+
Gets the value of the tauRise property.
+
+
getTauRise() - Method in class org.neuroml.model.ExpTwoSynapse
+
+
Gets the value of the tauRise property.
+
+
getTauSyn() - Method in class org.neuroml.model.BasePynnSynapse
+
+
Gets the value of the tauSyn property.
+
+
getTauSynE() - Method in class org.neuroml.model.BasePyNNCell
+
+
Gets the value of the tauSynE property.
+
+
getTauSynI() - Method in class org.neuroml.model.BasePyNNCell
+
+
Gets the value of the tauSynI property.
+
+
getTauw() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the tauw property.
+
+
getTauW() - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Gets the value of the tauW property.
+
+
getTemperature() - Method in class org.neuroml.model.Network
+
+
Gets the value of the temperature property.
+
+
getTest() - Method in class org.neuroml.model.OnCondition
+
+
Gets the value of the test property.
+
+
getTestingVoltage() - Method in class org.neuroml.model.VoltageClampTriple
+
+
Gets the value of the testingVoltage property.
+
+
getThresh() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the thresh property.
+
+
getThresh() - Method in class org.neuroml.model.IafCell
+
+
Gets the value of the thresh property.
+
+
getThresh() - Method in class org.neuroml.model.IafTauCell
+
+
Gets the value of the thresh property.
+
+
getThresh() - Method in class org.neuroml.model.IzhikevichCell
+
+
Gets the value of the thresh property.
+
+
getTime() - Method in class org.neuroml.model.Spike
+
+
Gets the value of the time property.
+
+
getTimeCourse() - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Gets the value of the timeCourse property.
+
+
getTimeCourse() - Method in class org.neuroml.model.GateHHRatesTau
+
+
Gets the value of the timeCourse property.
+
+
getTimeCourse() - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Gets the value of the timeCourse property.
+
+
getTimeCourse() - Method in class org.neuroml.model.GateHHTauInf
+
+
Gets the value of the timeCourse property.
+
+
getTimeCourse() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the timeCourse property.
+
+
getTimeCourse() - Method in class org.neuroml.model.TauInfTransition
+
+
Gets the value of the timeCourse property.
+
+
getTimeDerivative() - Method in class org.neuroml.model.Dynamics
+
+
Gets the value of the timeDerivative property.
+
+
getTimeDerivative() - Method in class org.neuroml.model.Regime
+
+
Gets the value of the timeDerivative property.
+
+
getTimedSynapticInput() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the timedSynapticInput property.
+
+
getTo() - Method in class org.neuroml.model.ForwardTransition
+
+
Gets the value of the to property.
+
+
getTo() - Method in class org.neuroml.model.Path
+
+
Gets the value of the to property.
+
+
getTo() - Method in class org.neuroml.model.ReverseTransition
+
+
Gets the value of the to property.
+
+
getTo() - Method in class org.neuroml.model.SubTree
+
+
Gets the value of the to property.
+
+
getTo() - Method in class org.neuroml.model.SynapticConnection
+
+
Gets the value of the to property.
+
+
getTo() - Method in class org.neuroml.model.TauInfTransition
+
+
Gets the value of the to property.
+
+
getTransientPoissonFiringSynapse() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the transientPoissonFiringSynapse property.
+
+
getTransition() - Method in class org.neuroml.model.OnCondition
+
+
Gets the value of the transition property.
+
+
getTranslationStart() - Method in class org.neuroml.model.ProximalDetails
+
+
Gets the value of the translationStart property.
+
+
getType() - Method in class org.neuroml.model.BlockMechanism
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.ConcentrationModelD
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.GateHHUndetermined
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.HHRate
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.HHTime
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.HHVariable
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.InstanceRequirement
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.IonChannel
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.Network
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.PlasticityMechanism
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.Population
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.Q10Settings
+
+
Gets the value of the type property.
+
+
getType() - Method in class org.neuroml.model.ReactionScheme
+
+
Gets the value of the type property.
+
+
getUnstructured() - Method in class org.neuroml.model.Layout
+
+
Gets the value of the unstructured property.
+
+
getV0() - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Gets the value of the v0 property.
+
+
getV0() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the v0 property.
+
+
getV0() - Method in class org.neuroml.model.IzhikevichCell
+
+
Gets the value of the v0 property.
+
+
getValidity() - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
getValue() - Method in class org.neuroml.model.Case
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.Constant
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.DerivedParameter
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.DerivedVariable
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.InhomogeneousValue
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.InitMembPotential
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.Property
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.Resistivity
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.SpecificCapacitance
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.SpikeThresh
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.StateAssignment
+
+
Gets the value of the value property.
+
+
getValue() - Method in class org.neuroml.model.TimeDerivative
+
+
Gets the value of the value property.
+
+
getVariable() - Method in class org.neuroml.model.InhomogeneousParameter
+
+
Gets the value of the variable property.
+
+
getVariable() - Method in class org.neuroml.model.StateAssignment
+
+
Gets the value of the variable property.
+
+
getVariable() - Method in class org.neuroml.model.TimeDerivative
+
+
Gets the value of the variable property.
+
+
getVariableParameter() - Method in class org.neuroml.model.ChannelDensity
+
+
Gets the value of the variableParameter property.
+
+
getVariableParameter() - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Gets the value of the variableParameter property.
+
+
getVariableParameter() - Method in class org.neuroml.model.ChannelDensityNonUniform
+
+
Gets the value of the variableParameter property.
+
+
getVariableParameter() - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
+
+
Gets the value of the variableParameter property.
+
+
getVariableParameter() - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
+
+
Gets the value of the variableParameter property.
+
+
getVariableParameter() - Method in class org.neuroml.model.ChannelPopulation
+
+
Gets the value of the variableParameter property.
+
+
getVInit() - Method in class org.neuroml.model.BasePyNNCell
+
+
Gets the value of the vInit property.
+
+
getVOffset() - Method in class org.neuroml.model.HHCondExp
+
+
Gets the value of the vOffset property.
+
+
getVoltageClamp() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the voltageClamp property.
+
+
getVoltageClampTriple() - Method in class org.neuroml.model.NeuroMLDocument
+
+
Gets the value of the voltageClampTriple property.
+
+
getVpeak() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the vpeak property.
+
+
getVr() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the vr property.
+
+
getVReset() - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Gets the value of the vReset property.
+
+
getVRest() - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Gets the value of the vRest property.
+
+
getVScaling() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the vScaling property.
+
+
getVShift() - Method in class org.neuroml.model.ChannelDensityVShift
+
+
Gets the value of the vShift property.
+
+
getVShift() - Method in class org.neuroml.model.IonChannelVShift
+
+
Gets the value of the vShift property.
+
+
getVSpike() - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Gets the value of the vSpike property.
+
+
getVt() - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Gets the value of the vt property.
+
+
getVT() - Method in class org.neuroml.model.AdExIaFCell
+
+
Gets the value of the vt property.
+
+
getVth() - Method in class org.neuroml.model.GradedSynapse
+
+
Gets the value of the vth property.
+
+
getVThresh() - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Gets the value of the vThresh property.
+
+
getW0() - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Gets the value of the w0 property.
+
+
getWarnings() - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
getWeight() - Method in class org.neuroml.model.ConnectionWD
+
+
Gets the value of the weight property.
+
+
getWeight() - Method in class org.neuroml.model.ContinuousConnectionInstanceW
+
+
Gets the value of the weight property.
+
+
getWeight() - Method in class org.neuroml.model.ElectricalConnectionInstanceW
+
+
Gets the value of the weight property.
+
+
getWeight() - Method in class org.neuroml.model.InputW
+
+
Gets the value of the weight property.
+
+
getX() - Method in class org.neuroml.model.Location
+
+
Gets the value of the x property.
+
+
getX() - Method in class org.neuroml.model.Point3DWithDiam
+
+
Gets the value of the x property.
+
+
getX0() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the x0 property.
+
+
getX1() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the x1 property.
+
+
getXSize() - Method in class org.neuroml.model.GridLayout
+
+
Gets the value of the xSize property.
+
+
getXSpacing() - Method in class org.neuroml.model.SpaceStructure
+
+
Gets the value of the xSpacing property.
+
+
getXStart() - Method in class org.neuroml.model.SpaceStructure
+
+
Gets the value of the xStart property.
+
+
getY() - Method in class org.neuroml.model.Location
+
+
Gets the value of the y property.
+
+
getY() - Method in class org.neuroml.model.Point3DWithDiam
+
+
Gets the value of the y property.
+
+
getY0() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the y0 property.
+
+
getYSize() - Method in class org.neuroml.model.GridLayout
+
+
Gets the value of the ySize property.
+
+
getYSpacing() - Method in class org.neuroml.model.SpaceStructure
+
+
Gets the value of the ySpacing property.
+
+
getYStart() - Method in class org.neuroml.model.SpaceStructure
+
+
Gets the value of the yStart property.
+
+
getZ() - Method in class org.neuroml.model.Location
+
+
Gets the value of the z property.
+
+
getZ() - Method in class org.neuroml.model.Point3DWithDiam
+
+
Gets the value of the z property.
+
+
getZ0() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Gets the value of the z0 property.
+
+
getZSize() - Method in class org.neuroml.model.GridLayout
+
+
Gets the value of the zSize property.
+
+
getZSpacing() - Method in class org.neuroml.model.SpaceStructure
+
+
Gets the value of the zSpacing property.
+
+
getZStart() - Method in class org.neuroml.model.SpaceStructure
+
+
Gets the value of the zStart property.
+
+
gKahp - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
gkc - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
gKdr - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
gl - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
gLd - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
gLeak - Variable in class org.neuroml.model.HHCondExp
+
 
+
gLs - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
gNa - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
gNmda - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
gradedSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
GradedSynapse - Class in org.neuroml.model
+
+
Graded/analog synapse.
+
+
GradedSynapse() - Constructor for class org.neuroml.model.GradedSynapse
+
 
+
grid - Variable in class org.neuroml.model.Layout
+
 
+
GRID_1_D - Enum constant in enum org.neuroml.model.AllowedSpaces
+
 
+
GRID_2_D - Enum constant in enum org.neuroml.model.AllowedSpaces
+
 
+
GRID_3_D - Enum constant in enum org.neuroml.model.AllowedSpaces
+
 
+
GridLayout - Class in org.neuroml.model
+
+
Java class for GridLayout complex type.
+
+
GridLayout() - Constructor for class org.neuroml.model.GridLayout
+
 
+
+

H

+
+
hasSegmentGroup(Cell, String) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
hasUnbranchedNonOverlappingInfo(Cell) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
hasWarnings() - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
Hdf5Exception - Exception in org.neuroml.model.util.hdf5
+
 
+
Hdf5Exception(String) - Constructor for exception org.neuroml.model.util.hdf5.Hdf5Exception
+
 
+
Hdf5Exception(String, Throwable) - Constructor for exception org.neuroml.model.util.hdf5.Hdf5Exception
+
 
+
Hdf5Utils - Class in org.neuroml.model.util.hdf5
+
 
+
Hdf5Utils() - Constructor for class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
hhCondExp - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
HHCondExp - Class in org.neuroml.model
+
+
Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
+
+
HHCondExp() - Constructor for class org.neuroml.model.HHCondExp
+
 
+
HHRate - Class in org.neuroml.model
+
+
Java class for HHRate complex type.
+
+
HHRate() - Constructor for class org.neuroml.model.HHRate
+
 
+
HHTime - Class in org.neuroml.model
+
+
Java class for HHTime complex type.
+
+
HHTime() - Constructor for class org.neuroml.model.HHTime
+
 
+
HHVariable - Class in org.neuroml.model
+
+
Java class for HHVariable complex type.
+
+
HHVariable() - Constructor for class org.neuroml.model.HHVariable
+
 
+
hindmarshRose1984Cell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
HindmarshRose1984Cell - Class in org.neuroml.model
+
+
The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
+
+
HindmarshRose1984Cell() - Constructor for class org.neuroml.model.HindmarshRose1984Cell
+
 
+
href - Variable in class org.neuroml.model.IncludeType
+
 
+
+

I

+
+
i - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
i - Variable in class org.neuroml.model.FitzHughNagumoCell
+
 
+
i - Variable in class org.neuroml.model.Instance
+
 
+
iafCell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IafCell - Class in org.neuroml.model
+
+
Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
+
+
IafCell() - Constructor for class org.neuroml.model.IafCell
+
 
+
iafRefCell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IafRefCell - Class in org.neuroml.model
+
+
Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
+
+
IafRefCell() - Constructor for class org.neuroml.model.IafRefCell
+
 
+
iafTauCell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IafTauCell - Class in org.neuroml.model
+
+
Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
+
+
IafTauCell() - Constructor for class org.neuroml.model.IafTauCell
+
 
+
iafTauRefCell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IafTauRefCell - Class in org.neuroml.model
+
+
Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
+
+
IafTauRefCell() - Constructor for class org.neuroml.model.IafTauRefCell
+
 
+
ibase - Variable in class org.neuroml.model.AlphaCurrentSynapse
+
 
+
id - Variable in class org.neuroml.model.Base
+
 
+
id - Variable in class org.neuroml.model.BaseNonNegativeIntegerId
+
 
+
id - Variable in class org.neuroml.model.Instance
+
 
+
id - Variable in class org.neuroml.model.util.StandardTest
+
 
+
iDend - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
ifCondAlpha - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IFCondAlpha - Class in org.neuroml.model
+
+
Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
IFCondAlpha() - Constructor for class org.neuroml.model.IFCondAlpha
+
 
+
ifCondExp - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IFCondExp - Class in org.neuroml.model
+
+
Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
IFCondExp() - Constructor for class org.neuroml.model.IFCondExp
+
 
+
ifCurrAlpha - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IFCurrAlpha - Class in org.neuroml.model
+
+
Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
IFCurrAlpha() - Constructor for class org.neuroml.model.IFCurrAlpha
+
 
+
ifCurrExp - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IFCurrExp - Class in org.neuroml.model
+
+
Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
+
+
IFCurrExp() - Constructor for class org.neuroml.model.IFCurrExp
+
 
+
include - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
include - Variable in class org.neuroml.model.SegmentGroup
+
 
+
Include - Class in org.neuroml.model
+
+
Include all members of another **segmentGroup** in this group
+
+
Include() - Constructor for class org.neuroml.model.Include
+
 
+
IncludeType - Class in org.neuroml.model
+
+
Java class for IncludeType complex type.
+
+
IncludeType() - Constructor for class org.neuroml.model.IncludeType
+
 
+
inhomogeneousParameter - Variable in class org.neuroml.model.InhomogeneousValue
+
 
+
inhomogeneousParameter - Variable in class org.neuroml.model.SegmentGroup
+
 
+
InhomogeneousParameter - Class in org.neuroml.model
+
+
An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ).
+
+
InhomogeneousParameter() - Constructor for class org.neuroml.model.InhomogeneousParameter
+
 
+
inhomogeneousValue - Variable in class org.neuroml.model.VariableParameter
+
 
+
InhomogeneousValue - Class in org.neuroml.model
+
+
Specifies the **value** of an **inhomogeneousParameter.** For usage see **variableParameter**
+
+
InhomogeneousValue() - Constructor for class org.neuroml.model.InhomogeneousValue
+
 
+
initial - Variable in class org.neuroml.model.Regime
+
 
+
initialConcentration - Variable in class org.neuroml.model.Species
+
 
+
initialExtConcentration - Variable in class org.neuroml.model.Species
+
 
+
initMembPotential - Variable in class org.neuroml.model.MembraneProperties
+
 
+
InitMembPotential - Class in org.neuroml.model
+
+
Explicitly set initial membrane potential for the cell + \n + :param value: + :type value: voltage
+
+
InitMembPotential() - Constructor for class org.neuroml.model.InitMembPotential
+
 
+
initReleaseProb - Variable in class org.neuroml.model.PlasticityMechanism
+
 
+
input - Variable in class org.neuroml.model.ExplicitInput
+
 
+
input - Variable in class org.neuroml.model.InputList
+
 
+
Input - Class in org.neuroml.model
+
+
Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
+
+
Input() - Constructor for class org.neuroml.model.Input
+
 
+
INPUT_LIST - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
inputList - Variable in class org.neuroml.model.Network
+
 
+
InputList - Class in org.neuroml.model
+
+
An explicit list of **input** s to a **population.**
+
+
InputList() - Constructor for class org.neuroml.model.InputList
+
 
+
inputW - Variable in class org.neuroml.model.InputList
+
 
+
InputW - Class in org.neuroml.model
+
+
Specifies input lists.
+
+
InputW() - Constructor for class org.neuroml.model.InputW
+
 
+
instance - Variable in class org.neuroml.model.Population
+
 
+
Instance - Class in org.neuroml.model
+
+
Specifies a single instance of a component in a **population** ( placed at **location** ).
+
+
Instance() - Constructor for class org.neuroml.model.Instance
+
 
+
INSTANCE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
instanceRequirement - Variable in class org.neuroml.model.ComponentType
+
 
+
InstanceRequirement - Class in org.neuroml.model
+
+
Java class for InstanceRequirement complex type.
+
+
InstanceRequirement() - Constructor for class org.neuroml.model.InstanceRequirement
+
 
+
instances - Variable in class org.neuroml.model.GateFractional
+
 
+
instances - Variable in class org.neuroml.model.GateHHInstantaneous
+
 
+
instances - Variable in class org.neuroml.model.GateHHRates
+
 
+
instances - Variable in class org.neuroml.model.GateHHRatesInf
+
 
+
instances - Variable in class org.neuroml.model.GateHHRatesTau
+
 
+
instances - Variable in class org.neuroml.model.GateHHRatesTauInf
+
 
+
instances - Variable in class org.neuroml.model.GateHHTauInf
+
 
+
instances - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
instances - Variable in class org.neuroml.model.GateKS
+
 
+
intracellularProperties - Variable in class org.neuroml.model.BiophysicalProperties
+
 
+
intracellularProperties - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IntracellularProperties - Class in org.neuroml.model
+
+
Biophysical properties related to the intracellular space within the **cell** , such as the **resistivity** and the list of ionic **species** present.
+
+
IntracellularProperties() - Constructor for class org.neuroml.model.IntracellularProperties
+
 
+
intracellularProperties2CaPools - Variable in class org.neuroml.model.BiophysicalProperties2CaPools
+
 
+
IntracellularProperties2CaPools - Class in org.neuroml.model
+
+
Variant of intracellularProperties with 2 independent Ca pools
+
+
IntracellularProperties2CaPools() - Constructor for class org.neuroml.model.IntracellularProperties2CaPools
+
 
+
iOffset - Variable in class org.neuroml.model.BasePyNNCell
+
 
+
ion - Variable in class org.neuroml.model.ChannelDensity
+
 
+
ion - Variable in class org.neuroml.model.ChannelDensityGHK
+
 
+
ion - Variable in class org.neuroml.model.ChannelDensityGHK2
+
 
+
ion - Variable in class org.neuroml.model.ChannelDensityNernst
+
 
+
ion - Variable in class org.neuroml.model.ChannelDensityNonUniform
+
 
+
ion - Variable in class org.neuroml.model.ChannelDensityNonUniformGHK
+
 
+
ion - Variable in class org.neuroml.model.ChannelDensityNonUniformNernst
+
 
+
ion - Variable in class org.neuroml.model.ChannelPopulation
+
 
+
ion - Variable in class org.neuroml.model.DecayingPoolConcentrationModel
+
 
+
ion - Variable in class org.neuroml.model.FixedFactorConcentrationModel
+
 
+
ion - Variable in class org.neuroml.model.Species
+
 
+
ION_CHANNEL_HH - Enum constant in enum org.neuroml.model.ChannelTypes
+
 
+
ION_CHANNEL_HH_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
ION_CHANNEL_KS_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
ION_CHANNEL_PASSIVE - Enum constant in enum org.neuroml.model.ChannelTypes
+
 
+
ION_CHANNEL_V_SHIFT_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
ionChannel - Variable in class org.neuroml.model.ChannelDensity
+
 
+
ionChannel - Variable in class org.neuroml.model.ChannelDensityGHK
+
 
+
ionChannel - Variable in class org.neuroml.model.ChannelDensityGHK2
+
 
+
ionChannel - Variable in class org.neuroml.model.ChannelDensityNernst
+
 
+
ionChannel - Variable in class org.neuroml.model.ChannelDensityNonUniform
+
 
+
ionChannel - Variable in class org.neuroml.model.ChannelDensityNonUniformGHK
+
 
+
ionChannel - Variable in class org.neuroml.model.ChannelDensityNonUniformNernst
+
 
+
ionChannel - Variable in class org.neuroml.model.ChannelPopulation
+
 
+
ionChannel - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IonChannel - Class in org.neuroml.model
+
+
Note **ionChannel** and **ionChannelHH** are currently functionally identical.
+
+
IonChannel() - Constructor for class org.neuroml.model.IonChannel
+
 
+
ionChannelHH - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IonChannelHH - Class in org.neuroml.model
+
+
Note **ionChannel** and **ionChannelHH** are currently functionally identical.
+
+
IonChannelHH() - Constructor for class org.neuroml.model.IonChannelHH
+
 
+
ionChannelKS - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IonChannelKS - Class in org.neuroml.model
+
+
A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param conductance: + :type conductance: conductance
+
+
IonChannelKS() - Constructor for class org.neuroml.model.IonChannelKS
+
 
+
IonChannelScalable - Class in org.neuroml.model
+
+
Java class for IonChannelScalable complex type.
+
+
IonChannelScalable() - Constructor for class org.neuroml.model.IonChannelScalable
+
 
+
ionChannelVShift - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IonChannelVShift - Class in org.neuroml.model
+
+
Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
+
+
IonChannelVShift() - Constructor for class org.neuroml.model.IonChannelVShift
+
 
+
iSoma - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
isUnbranchedNonOverlapping(SegmentGroup) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
isValid() - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
isWarning() - Method in class org.neuroml.model.util.StandardTest
+
 
+
izhikevich2007Cell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
Izhikevich2007Cell - Class in org.neuroml.model
+
+
Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
+
+
Izhikevich2007Cell() - Constructor for class org.neuroml.model.Izhikevich2007Cell
+
 
+
izhikevichCell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
IzhikevichCell - Class in org.neuroml.model
+
+
Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage
+
+
IzhikevichCell() - Constructor for class org.neuroml.model.IzhikevichCell
+
 
+
+

J

+
+
j - Variable in class org.neuroml.model.Instance
+
 
+
jaxb - Static variable in class org.neuroml.model.util.NeuroMLConverter
+
 
+
+

K

+
+
k - Variable in class org.neuroml.model.GradedSynapse
+
 
+
k - Variable in class org.neuroml.model.Instance
+
 
+
k - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
KS_STATE_COMP_TYPE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
+

L

+
+
LATEST_SCHEMA - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
LATEST_SCHEMA_LOCATION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
LATEST_SCHEMA_VERSION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
layout - Variable in class org.neuroml.model.Population
+
 
+
Layout - Class in org.neuroml.model
+
+
Java class for Layout complex type.
+
+
Layout() - Constructor for class org.neuroml.model.Layout
+
 
+
leakConductance - Variable in class org.neuroml.model.IafCell
+
 
+
leakReversal - Variable in class org.neuroml.model.IafCell
+
 
+
leakReversal - Variable in class org.neuroml.model.IafTauCell
+
 
+
LEMSProperty - Class in org.neuroml.model
+
+
Java class for LEMS_Property complex type.
+
+
LEMSProperty() - Constructor for class org.neuroml.model.LEMSProperty
+
 
+
level - Variable in class org.neuroml.model.util.StandardTest
+
 
+
linearGradedSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
LinearGradedSynapse - Class in org.neuroml.model
+
+
Behaves just like a one way gap junction.
+
+
LinearGradedSynapse() - Constructor for class org.neuroml.model.LinearGradedSynapse
+
 
+
loadNeuroML(File) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroML(File, boolean) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroML(File, boolean, boolean) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroML(File, boolean, boolean, ArrayList<String>) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroML(String) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroML(String, boolean, File) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroML(String, boolean, File, ArrayList<String>) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroMLOptimized(File) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroMLOptimized(File, boolean) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
loadNeuroMLOptimized(String) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
location - Variable in class org.neuroml.model.Instance
+
 
+
Location - Class in org.neuroml.model
+
+
Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** + \n + :param x: + :type x: none + :param y: + :type y: none + :param z: + :type z: none
+
+
Location() - Constructor for class org.neuroml.model.Location
+
 
+
LOCATION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
LOCATION_X - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
LOCATION_Y - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
LOCATION_Z - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
+

M

+
+
main(String[]) - Static method in class org.neuroml.model.util.CellUtils
+
 
+
main(String[]) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
main(String[]) - Static method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
main(String[]) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
main(String[]) - Static method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
 
+
main(String[]) - Static method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
main(String[]) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
marshal(Integer) - Method in class org.neuroml.model.Adapter1
+
 
+
marshal(Integer) - Method in class org.neuroml.model.Adapter2
+
 
+
marshaller - Static variable in class org.neuroml.model.util.NeuroMLConverter
+
 
+
maxISI - Variable in class org.neuroml.model.SpikeGeneratorRandom
+
 
+
member - Variable in class org.neuroml.model.SegmentGroup
+
 
+
Member - Class in org.neuroml.model
+
+
A single identified **segment** which is part of the **segmentGroup**
+
+
Member() - Constructor for class org.neuroml.model.Member
+
 
+
membraneProperties - Variable in class org.neuroml.model.BiophysicalProperties
+
 
+
MembraneProperties - Class in org.neuroml.model
+
+
Properties specific to the membrane, such as the **populations** of channels, **channelDensities,** **specificCapacitance,** etc.
+
+
MembraneProperties() - Constructor for class org.neuroml.model.MembraneProperties
+
 
+
membraneProperties2CaPools - Variable in class org.neuroml.model.BiophysicalProperties2CaPools
+
 
+
MembraneProperties2CaPools - Class in org.neuroml.model
+
+
Variant of membraneProperties with 2 independent Ca pools
+
+
MembraneProperties2CaPools() - Constructor for class org.neuroml.model.MembraneProperties2CaPools
+
 
+
metaid - Variable in class org.neuroml.model.Standalone
+
 
+
metric - Variable in class org.neuroml.model.InhomogeneousParameter
+
 
+
Metric - Enum in org.neuroml.model
+
+
Java class for Metric.
+
+
midpoint - Variable in class org.neuroml.model.HHRate
+
 
+
midpoint - Variable in class org.neuroml.model.HHTime
+
 
+
midpoint - Variable in class org.neuroml.model.HHVariable
+
 
+
minimumISI - Variable in class org.neuroml.model.SpikeGeneratorRefPoisson
+
 
+
minISI - Variable in class org.neuroml.model.SpikeGeneratorRandom
+
 
+
morphology - Variable in class org.neuroml.model.Cell
+
 
+
morphology - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
Morphology - Class in org.neuroml.model
+
+
The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
+
+
Morphology() - Constructor for class org.neuroml.model.Morphology
+
 
+
morphologyAttr - Variable in class org.neuroml.model.Cell
+
 
+
+

N

+
+
name - Variable in class org.neuroml.model.ComponentType
+
 
+
name - Variable in class org.neuroml.model.Constant
+
 
+
name - Variable in class org.neuroml.model.Exposure
+
 
+
name - Variable in class org.neuroml.model.InstanceRequirement
+
 
+
name - Variable in class org.neuroml.model.NamedDimensionalType
+
 
+
name - Variable in class org.neuroml.model.NamedDimensionalVariable
+
 
+
name - Variable in class org.neuroml.model.Regime
+
 
+
name - Variable in class org.neuroml.model.Segment
+
 
+
NamedDimensionalType - Class in org.neuroml.model
+
+
Java class for NamedDimensionalType complex type.
+
+
NamedDimensionalType() - Constructor for class org.neuroml.model.NamedDimensionalType
+
 
+
NamedDimensionalVariable - Class in org.neuroml.model
+
+
Java class for NamedDimensionalVariable complex type.
+
+
NamedDimensionalVariable() - Constructor for class org.neuroml.model.NamedDimensionalVariable
+
 
+
NAMESPACE_URI_VERSION_2 - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
namespaceToPrefixMap - Variable in class org.neuroml.model.util.NeuroMLNamespacePrefixMapper
+
 
+
network - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
Network - Class in org.neuroml.model
+
+
Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
+
+
Network() - Constructor for class org.neuroml.model.Network
+
 
+
NETWORK - Enum constant in enum org.neuroml.model.NetworkTypes
+
 
+
NETWORK - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
NETWORK_WITH_TEMPERATURE - Enum constant in enum org.neuroml.model.NetworkTypes
+
 
+
NetworkHelper - Class in org.neuroml.model.util.hdf5
+
 
+
NetworkHelper() - Constructor for class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
NetworkHelper(NeuroMLDocument) - Constructor for class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
NetworkTypes - Enum in org.neuroml.model
+
+
Java class for networkTypes.
+
+
neuroLexId - Variable in class org.neuroml.model.BaseCell
+
 
+
neuroLexId - Variable in class org.neuroml.model.BaseConnection
+
 
+
neuroLexId - Variable in class org.neuroml.model.BaseSynapse
+
 
+
neuroLexId - Variable in class org.neuroml.model.IonChannelKS
+
 
+
neuroLexId - Variable in class org.neuroml.model.IonChannelScalable
+
 
+
neuroLexId - Variable in class org.neuroml.model.Network
+
 
+
neuroLexId - Variable in class org.neuroml.model.Population
+
 
+
neuroLexId - Variable in class org.neuroml.model.Segment
+
 
+
neuroLexId - Variable in class org.neuroml.model.SegmentGroup
+
 
+
neuroLexId - Variable in class org.neuroml.model.SynapticConnection
+
 
+
NEUROML_ROOT - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
NEUROML_TOP_LEVEL_CONTENT - Static variable in class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
 
+
NEUROML2_NEUROLEX_UNBRANCHED_NONOVERLAPPING_SEG_GROUP - Static variable in class org.neuroml.model.util.CellUtils
+
 
+
neuroml2ToXml(NeuroMLDocument) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
neuroml2ToXml(NeuroMLDocument, String) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
NeuroML2Validator - Class in org.neuroml.model.util
+
 
+
NeuroML2Validator() - Constructor for class org.neuroml.model.util.NeuroML2Validator
+
 
+
NeuroMLConverter - Class in org.neuroml.model.util
+
 
+
NeuroMLConverter() - Constructor for class org.neuroml.model.util.NeuroMLConverter
+
 
+
NeuroMLDocument - Class in org.neuroml.model
+
+
Java class for NeuroMLDocument complex type.
+
+
NeuroMLDocument() - Constructor for class org.neuroml.model.NeuroMLDocument
+
 
+
NeuroMLElements - Class in org.neuroml.model.util
+
 
+
NeuroMLElements() - Constructor for class org.neuroml.model.util.NeuroMLElements
+
 
+
NeuroMLException - Exception in org.neuroml.model.util
+
 
+
NeuroMLException(String) - Constructor for exception org.neuroml.model.util.NeuroMLException
+
 
+
NeuroMLException(String, Throwable) - Constructor for exception org.neuroml.model.util.NeuroMLException
+
 
+
NeuroMLException(Throwable) - Constructor for exception org.neuroml.model.util.NeuroMLException
+
 
+
NeuroMLHDF5Reader - Class in org.neuroml.model.util.hdf5
+
 
+
NeuroMLHDF5Reader() - Constructor for class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
NeuroMLHDF5Writer - Class in org.neuroml.model.util.hdf5
+
 
+
NeuroMLHDF5Writer() - Constructor for class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
 
+
NeuroMLNamespacePrefixMapper - Class in org.neuroml.model.util
+
 
+
NeuroMLNamespacePrefixMapper() - Constructor for class org.neuroml.model.util.NeuroMLNamespacePrefixMapper
+
 
+
NO_WARNINGS - Static variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
normalizationEnd - Variable in class org.neuroml.model.DistalDetails
+
 
+
notes - Variable in class org.neuroml.model.GateFractional
+
 
+
notes - Variable in class org.neuroml.model.GateFractionalSubgate
+
 
+
notes - Variable in class org.neuroml.model.GateHHInstantaneous
+
 
+
notes - Variable in class org.neuroml.model.GateHHRates
+
 
+
notes - Variable in class org.neuroml.model.GateHHRatesInf
+
 
+
notes - Variable in class org.neuroml.model.GateHHRatesTau
+
 
+
notes - Variable in class org.neuroml.model.GateHHRatesTauInf
+
 
+
notes - Variable in class org.neuroml.model.GateHHTauInf
+
 
+
notes - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
notes - Variable in class org.neuroml.model.GateKS
+
 
+
notes - Variable in class org.neuroml.model.SegmentGroup
+
 
+
notes - Variable in class org.neuroml.model.Standalone
+
 
+
number - Variable in class org.neuroml.model.ChannelPopulation
+
 
+
number - Variable in class org.neuroml.model.RandomLayout
+
 
+
number - Variable in class org.neuroml.model.UnstructuredLayout
+
 
+
+

O

+
+
ObjectFactory - Class in org.neuroml.model
+
+
This object contains factory methods for each + Java content interface and Java element interface + generated in the org.neuroml.model package.
+
+
ObjectFactory() - Constructor for class org.neuroml.model.ObjectFactory
+
+
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.neuroml.model
+
+
onCondition - Variable in class org.neuroml.model.Dynamics
+
 
+
onCondition - Variable in class org.neuroml.model.Regime
+
 
+
OnCondition - Class in org.neuroml.model
+
+
Java class for OnCondition complex type.
+
+
OnCondition() - Constructor for class org.neuroml.model.OnCondition
+
 
+
onEntry - Variable in class org.neuroml.model.Regime
+
 
+
OnEntry - Class in org.neuroml.model
+
+
Java class for OnEntry complex type.
+
+
OnEntry() - Constructor for class org.neuroml.model.OnEntry
+
 
+
onEvent - Variable in class org.neuroml.model.Dynamics
+
 
+
OnEvent - Class in org.neuroml.model
+
+
Java class for OnEvent complex type.
+
+
OnEvent() - Constructor for class org.neuroml.model.OnEvent
+
 
+
onStart - Variable in class org.neuroml.model.Dynamics
+
 
+
OnStart - Class in org.neuroml.model
+
+
Java class for OnStart complex type.
+
+
OnStart() - Constructor for class org.neuroml.model.OnStart
+
 
+
open(H5File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
openForRead(File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
openH5file(File) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
openState - Variable in class org.neuroml.model.GateKS
+
 
+
OpenState - Class in org.neuroml.model
+
+
A **KSState** with **relativeConductance** of 1 + \n + :param relativeConductance: + :type relativeConductance: none
+
+
OpenState() - Constructor for class org.neuroml.model.OpenState
+
 
+
ORG_NEUROML_MODEL_VERSION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
org.neuroml.model - package org.neuroml.model
+
 
+
org.neuroml.model.util - package org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5 - package org.neuroml.model.util.hdf5
+
 
+
+

P

+
+
parameter - Variable in class org.neuroml.model.ComponentType
+
 
+
parameter - Variable in class org.neuroml.model.VariableParameter
+
 
+
Parameter - Class in org.neuroml.model
+
+
Java class for Parameter complex type.
+
+
Parameter() - Constructor for class org.neuroml.model.Parameter
+
 
+
parent - Variable in class org.neuroml.model.Segment
+
 
+
parse(File, boolean) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
parse(File, boolean, ArrayList<String>) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
parse(File, boolean, ArrayList<String>, boolean) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
parse2Ddataset(Dataset) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
parseAttribute(Attribute, String, Properties, boolean) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
parseDatasetForAttributes(Dataset) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
parseGroup(Group) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
parseGroupForAttributes(Group) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
parseOptimized(File) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
parseOptimized(File, boolean) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
path - Variable in class org.neuroml.model.SegmentGroup
+
 
+
Path - Class in org.neuroml.model
+
+
Include all the **segment** s between those specified by **from** and **to** , inclusive
+
+
Path() - Constructor for class org.neuroml.model.Path
+
 
+
PATH_LENGTH_FROM_ROOT - Enum constant in enum org.neuroml.model.Metric
+
 
+
period - Variable in class org.neuroml.model.SineGenerator
+
 
+
period - Variable in class org.neuroml.model.SineGeneratorDL
+
 
+
period - Variable in class org.neuroml.model.SpikeGenerator
+
 
+
permeability - Variable in class org.neuroml.model.ChannelDensityGHK
+
 
+
phase - Variable in class org.neuroml.model.SineGenerator
+
 
+
phase - Variable in class org.neuroml.model.SineGeneratorDL
+
 
+
phi - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
pinskyRinzelCA3Cell - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
PinskyRinzelCA3Cell - Class in org.neuroml.model
+
+
Reduced CA3 cell model from Pinsky, P.
+
+
PinskyRinzelCA3Cell() - Constructor for class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
plasticityMechanism - Variable in class org.neuroml.model.BlockingPlasticSynapse
+
 
+
PlasticityMechanism - Class in org.neuroml.model
+
+
Java class for PlasticityMechanism complex type.
+
+
PlasticityMechanism() - Constructor for class org.neuroml.model.PlasticityMechanism
+
 
+
PlasticityTypes - Enum in org.neuroml.model
+
+
Java class for PlasticityTypes.
+
+
POINT_CURR_CURRENT - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
Point3DWithDiam - Class in org.neuroml.model
+
+
Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ).
+
+
Point3DWithDiam() - Constructor for class org.neuroml.model.Point3DWithDiam
+
 
+
poissonFiringSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
PoissonFiringSynapse - Class in org.neuroml.model
+
+
Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
+
+
PoissonFiringSynapse() - Constructor for class org.neuroml.model.PoissonFiringSynapse
+
 
+
population - Variable in class org.neuroml.model.InputList
+
 
+
population - Variable in class org.neuroml.model.Network
+
 
+
Population - Class in org.neuroml.model
+
+
A population of components, with just one parameter for the **size,** i.
+
+
Population() - Constructor for class org.neuroml.model.Population
+
 
+
POPULATION - Enum constant in enum org.neuroml.model.PopulationTypes
+
 
+
POPULATION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
POPULATION_COMPONENT - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
POPULATION_LIST - Enum constant in enum org.neuroml.model.PopulationTypes
+
 
+
POPULATION_LIST - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
POPULATION_SIZE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
populationHasPositions(String) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
PopulationTypes - Enum in org.neuroml.model
+
+
Java class for populationTypes.
+
+
port - Variable in class org.neuroml.model.EventOut
+
 
+
port - Variable in class org.neuroml.model.OnEvent
+
 
+
postCell - Variable in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
postCellId - Variable in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
postComponent - Variable in class org.neuroml.model.ContinuousConnection
+
 
+
postFractionAlong - Variable in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
postFractionAlong - Variable in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
postSegment - Variable in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
postSegmentId - Variable in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
postsynapticPopulation - Variable in class org.neuroml.model.BaseProjection
+
 
+
pp - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
preCell - Variable in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
preCellId - Variable in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
preComponent - Variable in class org.neuroml.model.ContinuousConnection
+
 
+
preFractionAlong - Variable in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
preFractionAlong - Variable in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
preSegment - Variable in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
preSegmentId - Variable in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
presynapticPopulation - Variable in class org.neuroml.model.BaseProjection
+
 
+
projection - Variable in class org.neuroml.model.Network
+
 
+
Projection - Class in org.neuroml.model
+
+
Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements.
+
+
Projection() - Constructor for class org.neuroml.model.Projection
+
 
+
PROJECTION - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
property - Variable in class org.neuroml.model.ComponentType
+
 
+
property - Variable in class org.neuroml.model.SegmentGroup
+
 
+
property - Variable in class org.neuroml.model.Standalone
+
 
+
Property - Class in org.neuroml.model
+
+
A property ( a **tag** and **value** pair ), which can be on any **baseStandalone** either as a direct child, or within an **Annotation** .
+
+
Property() - Constructor for class org.neuroml.model.Property
+
 
+
proximal - Variable in class org.neuroml.model.InhomogeneousParameter
+
 
+
proximal - Variable in class org.neuroml.model.Segment
+
 
+
ProximalDetails - Class in org.neuroml.model
+
+
What to do at the proximal point when creating an inhomogeneous parameter
+
+
ProximalDetails() - Constructor for class org.neuroml.model.ProximalDetails
+
 
+
PULSE_GENERATOR_CURRENT - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
PULSE_GENERATOR_CURRENT_DL - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
pulseGenerator - Variable in class org.neuroml.model.CompoundInput
+
 
+
pulseGenerator - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
PulseGenerator - Class in org.neuroml.model
+
+
Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
+
+
PulseGenerator() - Constructor for class org.neuroml.model.PulseGenerator
+
 
+
pulseGeneratorDL - Variable in class org.neuroml.model.CompoundInputDL
+
 
+
pulseGeneratorDL - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
PulseGeneratorDL - Class in org.neuroml.model
+
+
Dimensionless equivalent of **pulseGenerator** .
+
+
PulseGeneratorDL() - Constructor for class org.neuroml.model.PulseGeneratorDL
+
 
+
+

Q

+
+
q10ConductanceScaling - Variable in class org.neuroml.model.IonChannelScalable
+
 
+
Q10ConductanceScaling - Class in org.neuroml.model
+
+
A value for the conductance scaling which varies as a standard function of the difference between the current temperature, **temperature,** and the temperature at which the conductance was originally determined, **experimentalTemp** + \n + :param q10Factor: + :type q10Factor: none + :param experimentalTemp: + :type experimentalTemp: temperature
+
+
Q10ConductanceScaling() - Constructor for class org.neuroml.model.Q10ConductanceScaling
+
 
+
q10Factor - Variable in class org.neuroml.model.Q10ConductanceScaling
+
 
+
q10Factor - Variable in class org.neuroml.model.Q10Settings
+
 
+
q10Settings - Variable in class org.neuroml.model.GateFractional
+
 
+
q10Settings - Variable in class org.neuroml.model.GateFractionalSubgate
+
 
+
q10Settings - Variable in class org.neuroml.model.GateHHRates
+
 
+
q10Settings - Variable in class org.neuroml.model.GateHHRatesInf
+
 
+
q10Settings - Variable in class org.neuroml.model.GateHHRatesTau
+
 
+
q10Settings - Variable in class org.neuroml.model.GateHHRatesTauInf
+
 
+
q10Settings - Variable in class org.neuroml.model.GateHHTauInf
+
 
+
q10Settings - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
q10Settings - Variable in class org.neuroml.model.GateKS
+
 
+
Q10Settings - Class in org.neuroml.model
+
+
Java class for Q10Settings complex type.
+
+
Q10Settings() - Constructor for class org.neuroml.model.Q10Settings
+
 
+
qd0 - Variable in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
+

R

+
+
r - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
rampGenerator - Variable in class org.neuroml.model.CompoundInput
+
 
+
rampGenerator - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
RampGenerator - Class in org.neuroml.model
+
+
Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
+
+
RampGenerator() - Constructor for class org.neuroml.model.RampGenerator
+
 
+
rampGeneratorDL - Variable in class org.neuroml.model.CompoundInputDL
+
 
+
rampGeneratorDL - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
RampGeneratorDL - Class in org.neuroml.model
+
+
Dimensionless equivalent of **rampGenerator** .
+
+
RampGeneratorDL() - Constructor for class org.neuroml.model.RampGeneratorDL
+
 
+
random - Variable in class org.neuroml.model.Layout
+
 
+
RandomLayout - Class in org.neuroml.model
+
+
Java class for RandomLayout complex type.
+
+
RandomLayout() - Constructor for class org.neuroml.model.RandomLayout
+
 
+
rate - Variable in class org.neuroml.model.HHRate
+
 
+
rate - Variable in class org.neuroml.model.HHTime
+
 
+
rate - Variable in class org.neuroml.model.HHVariable
+
 
+
rate - Variable in class org.neuroml.model.SpikeSourcePoisson
+
 
+
ReactionScheme - Class in org.neuroml.model
+
+
Java class for ReactionScheme complex type.
+
+
ReactionScheme() - Constructor for class org.neuroml.model.ReactionScheme
+
 
+
refract - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
refract - Variable in class org.neuroml.model.IafRefCell
+
 
+
refract - Variable in class org.neuroml.model.IafTauRefCell
+
 
+
regime - Variable in class org.neuroml.model.Dynamics
+
 
+
regime - Variable in class org.neuroml.model.Transition
+
 
+
Regime - Class in org.neuroml.model
+
+
Java class for Regime complex type.
+
+
Regime() - Constructor for class org.neuroml.model.Regime
+
 
+
region - Variable in class org.neuroml.model.Network
+
 
+
region - Variable in class org.neuroml.model.RandomLayout
+
 
+
Region - Class in org.neuroml.model
+
+
Initial attempt to specify 3D region for placing cells.
+
+
Region() - Constructor for class org.neuroml.model.Region
+
 
+
requirement - Variable in class org.neuroml.model.ComponentType
+
 
+
Requirement - Class in org.neuroml.model
+
+
Java class for Requirement complex type.
+
+
Requirement() - Constructor for class org.neuroml.model.Requirement
+
 
+
reset - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
reset - Variable in class org.neuroml.model.IafCell
+
 
+
reset - Variable in class org.neuroml.model.IafTauCell
+
 
+
reset() - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
resistivity - Variable in class org.neuroml.model.IntracellularProperties
+
 
+
Resistivity - Class in org.neuroml.model
+
+
The resistivity, or specific axial resistance, of the cytoplasm + \n + :param value: + :type value: resistivity
+
+
Resistivity() - Constructor for class org.neuroml.model.Resistivity
+
 
+
restingConc - Variable in class org.neuroml.model.DecayingPoolConcentrationModel
+
 
+
restingConc - Variable in class org.neuroml.model.FixedFactorConcentrationModel
+
 
+
returnVoltage - Variable in class org.neuroml.model.VoltageClampTriple
+
 
+
reverseRate - Variable in class org.neuroml.model.GateHHRates
+
 
+
reverseRate - Variable in class org.neuroml.model.GateHHRatesInf
+
 
+
reverseRate - Variable in class org.neuroml.model.GateHHRatesTau
+
 
+
reverseRate - Variable in class org.neuroml.model.GateHHRatesTauInf
+
 
+
reverseRate - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
ReverseTransition - Class in org.neuroml.model
+
+
A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
+
+
ReverseTransition() - Constructor for class org.neuroml.model.ReverseTransition
+
 
+
rho - Variable in class org.neuroml.model.FixedFactorConcentrationModel
+
 
+
+

S

+
+
s - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
scale - Variable in class org.neuroml.model.HHRate
+
 
+
scale - Variable in class org.neuroml.model.HHTime
+
 
+
scale - Variable in class org.neuroml.model.HHVariable
+
 
+
scalingConc - Variable in class org.neuroml.model.BlockMechanism
+
 
+
scalingVolt - Variable in class org.neuroml.model.BlockMechanism
+
 
+
segment - Variable in class org.neuroml.model.ChannelDensity
+
 
+
segment - Variable in class org.neuroml.model.ChannelDensityGHK
+
 
+
segment - Variable in class org.neuroml.model.ChannelDensityGHK2
+
 
+
segment - Variable in class org.neuroml.model.ChannelDensityNernst
+
 
+
segment - Variable in class org.neuroml.model.ChannelPopulation
+
 
+
segment - Variable in class org.neuroml.model.Member
+
 
+
segment - Variable in class org.neuroml.model.Morphology
+
 
+
segment - Variable in class org.neuroml.model.SegmentEndPoint
+
 
+
segment - Variable in class org.neuroml.model.SegmentParent
+
 
+
Segment - Class in org.neuroml.model
+
+
A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
+
+
Segment() - Constructor for class org.neuroml.model.Segment
+
 
+
SEGMENT_GROUP_ALL - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
SegmentEndPoint - Class in org.neuroml.model
+
+
Java class for SegmentEndPoint complex type.
+
+
SegmentEndPoint() - Constructor for class org.neuroml.model.SegmentEndPoint
+
 
+
segmentGroup - Variable in class org.neuroml.model.ChannelDensity
+
 
+
segmentGroup - Variable in class org.neuroml.model.ChannelDensityGHK
+
 
+
segmentGroup - Variable in class org.neuroml.model.ChannelDensityGHK2
+
 
+
segmentGroup - Variable in class org.neuroml.model.ChannelDensityNernst
+
 
+
segmentGroup - Variable in class org.neuroml.model.ChannelPopulation
+
 
+
segmentGroup - Variable in class org.neuroml.model.Include
+
 
+
segmentGroup - Variable in class org.neuroml.model.InitMembPotential
+
 
+
segmentGroup - Variable in class org.neuroml.model.Morphology
+
 
+
segmentGroup - Variable in class org.neuroml.model.Resistivity
+
 
+
segmentGroup - Variable in class org.neuroml.model.Species
+
 
+
segmentGroup - Variable in class org.neuroml.model.SpecificCapacitance
+
 
+
segmentGroup - Variable in class org.neuroml.model.SpikeThresh
+
 
+
segmentGroup - Variable in class org.neuroml.model.VariableParameter
+
 
+
SegmentGroup - Class in org.neuroml.model
+
+
A method to describe a group of **segment** s in a **morphology** , e.
+
+
SegmentGroup() - Constructor for class org.neuroml.model.SegmentGroup
+
 
+
segmentId - Variable in class org.neuroml.model.Input
+
 
+
SegmentParent - Class in org.neuroml.model
+
+
Java class for SegmentParent complex type.
+
+
SegmentParent() - Constructor for class org.neuroml.model.SegmentParent
+
 
+
select - Variable in class org.neuroml.model.CellSet
+
 
+
select - Variable in class org.neuroml.model.DerivedVariable
+
 
+
setA(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Sets the value of the a property.
+
+
setA(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the a property.
+
+
setA(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Sets the value of the a property.
+
+
setA(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the a property.
+
+
setA(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the a property.
+
+
setA(String) - Method in class org.neuroml.model.IzhikevichCell
+
+
Sets the value of the a property.
+
+
setActive(double) - Method in class org.neuroml.model.VoltageClampTriple
+
+
Sets the value of the active property.
+
+
setAlphac(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the alphac property.
+
+
setAmplitude(String) - Method in class org.neuroml.model.PulseGenerator
+
+
Sets the value of the amplitude property.
+
+
setAmplitude(String) - Method in class org.neuroml.model.PulseGeneratorDL
+
+
Sets the value of the amplitude property.
+
+
setAmplitude(String) - Method in class org.neuroml.model.SineGenerator
+
+
Sets the value of the amplitude property.
+
+
setAmplitude(String) - Method in class org.neuroml.model.SineGeneratorDL
+
+
Sets the value of the amplitude property.
+
+
setAnnotation(Annotation) - Method in class org.neuroml.model.SegmentGroup
+
+
Sets the value of the annotation property.
+
+
setAnnotation(Annotation) - Method in class org.neuroml.model.Standalone
+
+
Sets the value of the annotation property.
+
+
setAverageRate(String) - Method in class org.neuroml.model.PoissonFiringSynapse
+
+
Sets the value of the averageRate property.
+
+
setAverageRate(String) - Method in class org.neuroml.model.SpikeGeneratorPoisson
+
+
Sets the value of the averageRate property.
+
+
setAverageRate(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Sets the value of the averageRate property.
+
+
setB(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Sets the value of the b property.
+
+
setB(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the b property.
+
+
setB(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Sets the value of the b property.
+
+
setB(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the b property.
+
+
setB(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the b property.
+
+
setB(String) - Method in class org.neuroml.model.IzhikevichCell
+
+
Sets the value of the b property.
+
+
setBaseDirectory(File) - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
setBasedOn(AllowedSpaces) - Method in class org.neuroml.model.Space
+
+
Sets the value of the basedOn property.
+
+
setBaselineAmplitude(String) - Method in class org.neuroml.model.RampGenerator
+
+
Sets the value of the baselineAmplitude property.
+
+
setBaselineAmplitude(String) - Method in class org.neuroml.model.RampGeneratorDL
+
+
Sets the value of the baselineAmplitude property.
+
+
setBetac(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the betac property.
+
+
setBiophysicalProperties(BiophysicalProperties) - Method in class org.neuroml.model.Cell
+
+
Sets the value of the biophysicalProperties property.
+
+
setBiophysicalProperties2CaPools(BiophysicalProperties2CaPools) - Method in class org.neuroml.model.Cell2CaPools
+
+
Sets the value of the biophysicalProperties2CaPools property.
+
+
setBiophysicalPropertiesAttr(String) - Method in class org.neuroml.model.Cell
+
+
Sets the value of the biophysicalPropertiesAttr property.
+
+
setBlockConcentration(String) - Method in class org.neuroml.model.BlockMechanism
+
+
Sets the value of the blockConcentration property.
+
+
setBlockMechanism(BlockMechanism) - Method in class org.neuroml.model.BlockingPlasticSynapse
+
+
Sets the value of the blockMechanism property.
+
+
setC(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the c property.
+
+
setC(String) - Method in class org.neuroml.model.IafCell
+
+
Sets the value of the c property.
+
+
setC(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the c property.
+
+
setC(String) - Method in class org.neuroml.model.IzhikevichCell
+
+
Sets the value of the c property.
+
+
setCap(String) - Method in class org.neuroml.model.BaseCellMembPotCap
+
+
Sets the value of the cap property.
+
+
setCm(float) - Method in class org.neuroml.model.BasePyNNCell
+
+
Sets the value of the cm property.
+
+
setCm(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the cm property.
+
+
setComponent(String) - Method in class org.neuroml.model.InputList
+
+
Sets the value of the component property.
+
+
setComponent(String) - Method in class org.neuroml.model.Population
+
+
Sets the value of the component property.
+
+
setConcentrationModel(String) - Method in class org.neuroml.model.Species
+
+
Sets the value of the concentrationModel property.
+
+
setCondDensity(String) - Method in class org.neuroml.model.ChannelDensity
+
+
Sets the value of the condDensity property.
+
+
setCondDensity(String) - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Sets the value of the condDensity property.
+
+
setCondDensity(String) - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Sets the value of the condDensity property.
+
+
setCondition(String) - Method in class org.neuroml.model.Case
+
+
Sets the value of the condition property.
+
+
setConditioningVoltage(String) - Method in class org.neuroml.model.VoltageClampTriple
+
+
Sets the value of the conditioningVoltage property.
+
+
setConductance(String) - Method in class org.neuroml.model.GapJunction
+
+
Sets the value of the conductance property.
+
+
setConductance(String) - Method in class org.neuroml.model.GradedSynapse
+
+
Sets the value of the conductance property.
+
+
setConductance(String) - Method in class org.neuroml.model.IonChannel
+
+
Sets the value of the conductance property.
+
+
setConductance(String) - Method in class org.neuroml.model.IonChannelKS
+
+
Sets the value of the conductance property.
+
+
setConductance(String) - Method in class org.neuroml.model.LinearGradedSynapse
+
+
Sets the value of the conductance property.
+
+
setD(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the d property.
+
+
setD(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the d property.
+
+
setD(String) - Method in class org.neuroml.model.IzhikevichCell
+
+
Sets the value of the d property.
+
+
setDecayConstant(String) - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
+
Sets the value of the decayConstant property.
+
+
setDecayConstant(String) - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
+
Sets the value of the decayConstant property.
+
+
setDefaultValue(Double) - Method in class org.neuroml.model.LEMSProperty
+
+
Sets the value of the defaultValue property.
+
+
setDelay(String) - Method in class org.neuroml.model.ConnectionWD
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.PulseGenerator
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.PulseGeneratorDL
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.RampGenerator
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.RampGeneratorDL
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.SineGenerator
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.SineGeneratorDL
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.VoltageClamp
+
+
Sets the value of the delay property.
+
+
setDelay(String) - Method in class org.neuroml.model.VoltageClampTriple
+
+
Sets the value of the delay property.
+
+
setDelT(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the delT property.
+
+
setDelta(String) - Method in class org.neuroml.model.GradedSynapse
+
+
Sets the value of the delta property.
+
+
setDeltaT(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Sets the value of the deltaT property.
+
+
setDescription(String) - Method in class org.neuroml.model.ComponentType
+
+
Sets the value of the description property.
+
+
setDescription(String) - Method in class org.neuroml.model.Constant
+
+
Sets the value of the description property.
+
+
setDescription(String) - Method in class org.neuroml.model.Exposure
+
+
Sets the value of the description property.
+
+
setDescription(String) - Method in class org.neuroml.model.NamedDimensionalType
+
+
Sets the value of the description property.
+
+
setDescription(String) - Method in class org.neuroml.model.NamedDimensionalVariable
+
+
Sets the value of the description property.
+
+
setDestination(String) - Method in class org.neuroml.model.ExplicitInput
+
+
Sets the value of the destination property.
+
+
setDestination(String) - Method in class org.neuroml.model.Input
+
+
Sets the value of the destination property.
+
+
setDestination(String) - Method in class org.neuroml.model.SynapticConnection
+
+
Sets the value of the destination property.
+
+
setDiameter(double) - Method in class org.neuroml.model.Point3DWithDiam
+
+
Sets the value of the diameter property.
+
+
setDimension(String) - Method in class org.neuroml.model.Constant
+
+
Sets the value of the dimension property.
+
+
setDimension(String) - Method in class org.neuroml.model.Exposure
+
+
Sets the value of the dimension property.
+
+
setDimension(String) - Method in class org.neuroml.model.NamedDimensionalType
+
+
Sets the value of the dimension property.
+
+
setDimension(String) - Method in class org.neuroml.model.NamedDimensionalVariable
+
+
Sets the value of the dimension property.
+
+
setDistal(DistalDetails) - Method in class org.neuroml.model.InhomogeneousParameter
+
+
Sets the value of the distal property.
+
+
setDistal(Point3DWithDiam) - Method in class org.neuroml.model.Segment
+
+
Sets the value of the distal property.
+
+
setDuration(String) - Method in class org.neuroml.model.PulseGenerator
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.PulseGeneratorDL
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.RampGenerator
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.RampGeneratorDL
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.SineGenerator
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.SineGeneratorDL
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.SpikeSourcePoisson
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.VoltageClamp
+
+
Sets the value of the duration property.
+
+
setDuration(String) - Method in class org.neuroml.model.VoltageClampTriple
+
+
Sets the value of the duration property.
+
+
setECa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the eCa property.
+
+
setEK(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the ek property.
+
+
setEL(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the el property.
+
+
setEL(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the el property.
+
+
setENa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the eNa property.
+
+
setErev(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapse
+
+
Sets the value of the erev property.
+
+
setErev(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
+
Sets the value of the erev property.
+
+
setErev(String) - Method in class org.neuroml.model.ChannelDensity
+
+
Sets the value of the erev property.
+
+
setErev(String) - Method in class org.neuroml.model.ChannelDensityNonUniform
+
+
Sets the value of the erev property.
+
+
setErev(String) - Method in class org.neuroml.model.ChannelPopulation
+
+
Sets the value of the erev property.
+
+
setErev(String) - Method in class org.neuroml.model.GradedSynapse
+
+
Sets the value of the erev property.
+
+
setERev(float) - Method in class org.neuroml.model.AlphaCondSynapse
+
+
Sets the value of the eRev property.
+
+
setERev(float) - Method in class org.neuroml.model.ExpCondSynapse
+
+
Sets the value of the eRev property.
+
+
setERevE(float) - Method in class org.neuroml.model.BasePyNNIaFCondCell
+
+
Sets the value of the eRevE property.
+
+
setERevE(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the eRevE property.
+
+
setERevI(float) - Method in class org.neuroml.model.BasePyNNIaFCondCell
+
+
Sets the value of the eRevI property.
+
+
setERevI(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the eRevI property.
+
+
setERevK(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the eRevK property.
+
+
setERevLeak(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the eRevLeak property.
+
+
setERevNa(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the eRevNa property.
+
+
setExperimentalTemp(String) - Method in class org.neuroml.model.Q10ConductanceScaling
+
+
Sets the value of the experimentalTemp property.
+
+
setExperimentalTemp(String) - Method in class org.neuroml.model.Q10Settings
+
+
Sets the value of the experimentalTemp property.
+
+
setExposure(String) - Method in class org.neuroml.model.NamedDimensionalVariable
+
+
Sets the value of the exposure property.
+
+
setExtends(String) - Method in class org.neuroml.model.ComponentType
+
+
Sets the value of the extends property.
+
+
setExtracellularProperties(String) - Method in class org.neuroml.model.Population
+
+
Sets the value of the extracellularProperties property.
+
+
setExtracellularProperties(ExtracellularProperties) - Method in class org.neuroml.model.BiophysicalProperties
+
+
Sets the value of the extracellularProperties property.
+
+
setExtracellularProperties(ExtracellularProperties) - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
+
Sets the value of the extracellularProperties property.
+
+
setFinishAmplitude(String) - Method in class org.neuroml.model.RampGenerator
+
+
Sets the value of the finishAmplitude property.
+
+
setFinishAmplitude(String) - Method in class org.neuroml.model.RampGeneratorDL
+
+
Sets the value of the finishAmplitude property.
+
+
setFixedQ10(String) - Method in class org.neuroml.model.Q10Settings
+
+
Sets the value of the fixedQ10 property.
+
+
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHRates
+
+
Sets the value of the forwardRate property.
+
+
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHRatesInf
+
+
Sets the value of the forwardRate property.
+
+
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHRatesTau
+
+
Sets the value of the forwardRate property.
+
+
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Sets the value of the forwardRate property.
+
+
setForwardRate(HHRate) - Method in class org.neuroml.model.GateHHUndetermined
+
+
Sets the value of the forwardRate property.
+
+
setFractionalConductance(String) - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Sets the value of the fractionalConductance property.
+
+
setFractionAlong(Float) - Method in class org.neuroml.model.Input
+
+
Sets the value of the fractionAlong property.
+
+
setFractionAlong(Float) - Method in class org.neuroml.model.SegmentParent
+
+
Sets the value of the fractionAlong property.
+
+
setFrom(String) - Method in class org.neuroml.model.ForwardTransition
+
+
Sets the value of the from property.
+
+
setFrom(String) - Method in class org.neuroml.model.ReverseTransition
+
+
Sets the value of the from property.
+
+
setFrom(String) - Method in class org.neuroml.model.SynapticConnection
+
+
Sets the value of the from property.
+
+
setFrom(String) - Method in class org.neuroml.model.TauInfTransition
+
+
Sets the value of the from property.
+
+
setFrom(SegmentEndPoint) - Method in class org.neuroml.model.Path
+
+
Sets the value of the from property.
+
+
setFrom(SegmentEndPoint) - Method in class org.neuroml.model.SubTree
+
+
Sets the value of the from property.
+
+
setGAmpa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gAmpa property.
+
+
setGbarK(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the gbarK property.
+
+
setGbarNa(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the gbarNa property.
+
+
setGbase(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapse
+
+
Sets the value of the gbase property.
+
+
setGbase1(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
+
Sets the value of the gbase1 property.
+
+
setGbase2(String) - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
+
Sets the value of the gbase2 property.
+
+
setGc(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gc property.
+
+
setGCa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gCa property.
+
+
setGKahp(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gKahp property.
+
+
setGKC(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gkc property.
+
+
setGKdr(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gKdr property.
+
+
setGL(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the gl property.
+
+
setGLd(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gLd property.
+
+
setGLeak(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the gLeak property.
+
+
setGLs(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gLs property.
+
+
setGNa(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gNa property.
+
+
setGNmda(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the gNmda property.
+
+
setGrid(GridLayout) - Method in class org.neuroml.model.Layout
+
+
Sets the value of the grid property.
+
+
setHref(String) - Method in class org.neuroml.model.IncludeType
+
+
Sets the value of the href property.
+
+
setI(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Sets the value of the i property.
+
+
setI(String) - Method in class org.neuroml.model.FitzHughNagumoCell
+
+
Sets the value of the i property.
+
+
setI(BigInteger) - Method in class org.neuroml.model.Instance
+
+
Sets the value of the i property.
+
+
setIbase(String) - Method in class org.neuroml.model.AlphaCurrentSynapse
+
+
Sets the value of the ibase property.
+
+
setId(Integer) - Method in class org.neuroml.model.BaseNonNegativeIntegerId
+
+
Sets the value of the id property.
+
+
setId(String) - Method in class org.neuroml.model.Base
+
+
Sets the value of the id property.
+
+
setId(BigInteger) - Method in class org.neuroml.model.Instance
+
+
Sets the value of the id property.
+
+
setIDend(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the iDend property.
+
+
setInhomogeneousParameter(String) - Method in class org.neuroml.model.InhomogeneousValue
+
+
Sets the value of the inhomogeneousParameter property.
+
+
setInhomogeneousValue(InhomogeneousValue) - Method in class org.neuroml.model.VariableParameter
+
+
Sets the value of the inhomogeneousValue property.
+
+
setInitial(TrueOrFalse) - Method in class org.neuroml.model.Regime
+
+
Sets the value of the initial property.
+
+
setInitialConcentration(String) - Method in class org.neuroml.model.Species
+
+
Sets the value of the initialConcentration property.
+
+
setInitialExtConcentration(String) - Method in class org.neuroml.model.Species
+
+
Sets the value of the initialExtConcentration property.
+
+
setInitReleaseProb(float) - Method in class org.neuroml.model.PlasticityMechanism
+
+
Sets the value of the initReleaseProb property.
+
+
setInput(String) - Method in class org.neuroml.model.ExplicitInput
+
+
Sets the value of the input property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateFractional
+
+
Sets the value of the instances property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateHHInstantaneous
+
+
Sets the value of the instances property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateHHRates
+
+
Sets the value of the instances property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateHHRatesInf
+
+
Sets the value of the instances property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateHHRatesTau
+
+
Sets the value of the instances property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Sets the value of the instances property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateHHTauInf
+
+
Sets the value of the instances property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateHHUndetermined
+
+
Sets the value of the instances property.
+
+
setInstances(Integer) - Method in class org.neuroml.model.GateKS
+
+
Sets the value of the instances property.
+
+
setIntracellularProperties(IntracellularProperties) - Method in class org.neuroml.model.BiophysicalProperties
+
+
Sets the value of the intracellularProperties property.
+
+
setIntracellularProperties2CaPools(IntracellularProperties2CaPools) - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
+
Sets the value of the intracellularProperties2CaPools property.
+
+
setIOffset(float) - Method in class org.neuroml.model.BasePyNNCell
+
+
Sets the value of the iOffset property.
+
+
setIon(String) - Method in class org.neuroml.model.ChannelDensity
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.ChannelDensityNonUniform
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.ChannelPopulation
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
+
Sets the value of the ion property.
+
+
setIon(String) - Method in class org.neuroml.model.Species
+
+
Sets the value of the ion property.
+
+
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensity
+
+
Sets the value of the ionChannel property.
+
+
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Sets the value of the ionChannel property.
+
+
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Sets the value of the ionChannel property.
+
+
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Sets the value of the ionChannel property.
+
+
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityNonUniform
+
+
Sets the value of the ionChannel property.
+
+
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
+
+
Sets the value of the ionChannel property.
+
+
setIonChannel(String) - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
+
+
Sets the value of the ionChannel property.
+
+
setIonChannel(String) - Method in class org.neuroml.model.ChannelPopulation
+
+
Sets the value of the ionChannel property.
+
+
setISoma(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the iSoma property.
+
+
setJ(BigInteger) - Method in class org.neuroml.model.Instance
+
+
Sets the value of the j property.
+
+
setK(String) - Method in class org.neuroml.model.GradedSynapse
+
+
Sets the value of the k property.
+
+
setK(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the k property.
+
+
setK(BigInteger) - Method in class org.neuroml.model.Instance
+
+
Sets the value of the k property.
+
+
setLayout(Layout) - Method in class org.neuroml.model.Population
+
+
Sets the value of the layout property.
+
+
setLeakConductance(String) - Method in class org.neuroml.model.IafCell
+
+
Sets the value of the leakConductance property.
+
+
setLeakReversal(String) - Method in class org.neuroml.model.IafCell
+
+
Sets the value of the leakReversal property.
+
+
setLeakReversal(String) - Method in class org.neuroml.model.IafTauCell
+
+
Sets the value of the leakReversal property.
+
+
setLocation(Location) - Method in class org.neuroml.model.Instance
+
+
Sets the value of the location property.
+
+
setMaxISI(String) - Method in class org.neuroml.model.SpikeGeneratorRandom
+
+
Sets the value of the maxISI property.
+
+
setMembraneProperties(MembraneProperties) - Method in class org.neuroml.model.BiophysicalProperties
+
+
Sets the value of the membraneProperties property.
+
+
setMembraneProperties2CaPools(MembraneProperties2CaPools) - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
+
Sets the value of the membraneProperties2CaPools property.
+
+
setMetaid(String) - Method in class org.neuroml.model.Standalone
+
+
Sets the value of the metaid property.
+
+
setMetric(Metric) - Method in class org.neuroml.model.InhomogeneousParameter
+
+
Sets the value of the metric property.
+
+
setMidpoint(String) - Method in class org.neuroml.model.HHRate
+
+
Sets the value of the midpoint property.
+
+
setMidpoint(String) - Method in class org.neuroml.model.HHTime
+
+
Sets the value of the midpoint property.
+
+
setMidpoint(String) - Method in class org.neuroml.model.HHVariable
+
+
Sets the value of the midpoint property.
+
+
setMinimumISI(String) - Method in class org.neuroml.model.SpikeGeneratorRefPoisson
+
+
Sets the value of the minimumISI property.
+
+
setMinISI(String) - Method in class org.neuroml.model.SpikeGeneratorRandom
+
+
Sets the value of the minISI property.
+
+
setMorphology(Morphology) - Method in class org.neuroml.model.Cell
+
+
Sets the value of the morphology property.
+
+
setMorphologyAttr(String) - Method in class org.neuroml.model.Cell
+
+
Sets the value of the morphologyAttr property.
+
+
setName(String) - Method in class org.neuroml.model.ComponentType
+
+
Sets the value of the name property.
+
+
setName(String) - Method in class org.neuroml.model.Constant
+
+
Sets the value of the name property.
+
+
setName(String) - Method in class org.neuroml.model.Exposure
+
+
Sets the value of the name property.
+
+
setName(String) - Method in class org.neuroml.model.InstanceRequirement
+
+
Sets the value of the name property.
+
+
setName(String) - Method in class org.neuroml.model.NamedDimensionalType
+
+
Sets the value of the name property.
+
+
setName(String) - Method in class org.neuroml.model.NamedDimensionalVariable
+
+
Sets the value of the name property.
+
+
setName(String) - Method in class org.neuroml.model.Regime
+
+
Sets the value of the name property.
+
+
setName(String) - Method in class org.neuroml.model.Segment
+
+
Sets the value of the name property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.BaseCell
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.BaseConnection
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.BaseSynapse
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.IonChannelKS
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.IonChannelScalable
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.Network
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.Population
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.Segment
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.SegmentGroup
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroLexId(String) - Method in class org.neuroml.model.SynapticConnection
+
+
Sets the value of the neuroLexId property.
+
+
setNeuroMLDocument(NeuroMLDocument) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
setNormalizationEnd(double) - Method in class org.neuroml.model.DistalDetails
+
+
Sets the value of the normalizationEnd property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateFractional
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateHHInstantaneous
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateHHRates
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateHHRatesInf
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateHHRatesTau
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateHHTauInf
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateHHUndetermined
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.GateKS
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.SegmentGroup
+
+
Sets the value of the notes property.
+
+
setNotes(String) - Method in class org.neuroml.model.Standalone
+
+
Sets the value of the notes property.
+
+
setNumber(Integer) - Method in class org.neuroml.model.ChannelPopulation
+
+
Sets the value of the number property.
+
+
setNumber(BigInteger) - Method in class org.neuroml.model.RandomLayout
+
+
Sets the value of the number property.
+
+
setNumber(BigInteger) - Method in class org.neuroml.model.UnstructuredLayout
+
+
Sets the value of the number property.
+
+
setOnEntry(OnEntry) - Method in class org.neuroml.model.Regime
+
+
Sets the value of the onEntry property.
+
+
setOnStart(OnStart) - Method in class org.neuroml.model.Dynamics
+
+
Sets the value of the onStart property.
+
+
setParameter(String) - Method in class org.neuroml.model.VariableParameter
+
+
Sets the value of the parameter property.
+
+
setParent(SegmentParent) - Method in class org.neuroml.model.Segment
+
+
Sets the value of the parent property.
+
+
setPeriod(String) - Method in class org.neuroml.model.SineGenerator
+
+
Sets the value of the period property.
+
+
setPeriod(String) - Method in class org.neuroml.model.SineGeneratorDL
+
+
Sets the value of the period property.
+
+
setPeriod(String) - Method in class org.neuroml.model.SpikeGenerator
+
+
Sets the value of the period property.
+
+
setPermeability(String) - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Sets the value of the permeability property.
+
+
setPhase(String) - Method in class org.neuroml.model.SineGenerator
+
+
Sets the value of the phase property.
+
+
setPhase(String) - Method in class org.neuroml.model.SineGeneratorDL
+
+
Sets the value of the phase property.
+
+
setPhi(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Sets the value of the phi property.
+
+
setPlasticityMechanism(PlasticityMechanism) - Method in class org.neuroml.model.BlockingPlasticSynapse
+
+
Sets the value of the plasticityMechanism property.
+
+
setPopulation(String) - Method in class org.neuroml.model.InputList
+
+
Sets the value of the population property.
+
+
setPopulationArray(Population, HashMap<String, Integer>, float[][]) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
setPort(String) - Method in class org.neuroml.model.EventOut
+
+
Sets the value of the port property.
+
+
setPort(String) - Method in class org.neuroml.model.OnEvent
+
+
Sets the value of the port property.
+
+
setPostCell(String) - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Sets the value of the postCell property.
+
+
setPostCellId(String) - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Sets the value of the postCellId property.
+
+
setPostComponent(String) - Method in class org.neuroml.model.ContinuousConnection
+
+
Sets the value of the postComponent property.
+
+
setPostFractionAlong(Float) - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Sets the value of the postFractionAlong property.
+
+
setPostFractionAlong(Float) - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Sets the value of the postFractionAlong property.
+
+
setPostSegment(Integer) - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Sets the value of the postSegment property.
+
+
setPostSegmentId(Integer) - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Sets the value of the postSegmentId property.
+
+
setPostsynapticPopulation(String) - Method in class org.neuroml.model.BaseProjection
+
+
Sets the value of the postsynapticPopulation property.
+
+
setPp(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the pp property.
+
+
setPreCell(String) - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Sets the value of the preCell property.
+
+
setPreCellId(String) - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Sets the value of the preCellId property.
+
+
setPreComponent(String) - Method in class org.neuroml.model.ContinuousConnection
+
+
Sets the value of the preComponent property.
+
+
setPreFractionAlong(Float) - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Sets the value of the preFractionAlong property.
+
+
setPreFractionAlong(Float) - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Sets the value of the preFractionAlong property.
+
+
setPreSegment(Integer) - Method in class org.neuroml.model.BaseConnectionNewFormat
+
+
Sets the value of the preSegment property.
+
+
setPreSegmentId(Integer) - Method in class org.neuroml.model.BaseConnectionOldFormat
+
+
Sets the value of the preSegmentId property.
+
+
setPresynapticPopulation(String) - Method in class org.neuroml.model.BaseProjection
+
+
Sets the value of the presynapticPopulation property.
+
+
setProjectionArray(BaseProjection, HashMap<String, Integer>, float[][]) - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
setProximal(Point3DWithDiam) - Method in class org.neuroml.model.Segment
+
+
Sets the value of the proximal property.
+
+
setProximal(ProximalDetails) - Method in class org.neuroml.model.InhomogeneousParameter
+
+
Sets the value of the proximal property.
+
+
setQ10Factor(String) - Method in class org.neuroml.model.Q10ConductanceScaling
+
+
Sets the value of the q10Factor property.
+
+
setQ10Factor(String) - Method in class org.neuroml.model.Q10Settings
+
+
Sets the value of the q10Factor property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateFractional
+
+
Sets the value of the q10Settings property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Sets the value of the q10Settings property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHRates
+
+
Sets the value of the q10Settings property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHRatesInf
+
+
Sets the value of the q10Settings property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHRatesTau
+
+
Sets the value of the q10Settings property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Sets the value of the q10Settings property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHTauInf
+
+
Sets the value of the q10Settings property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateHHUndetermined
+
+
Sets the value of the q10Settings property.
+
+
setQ10Settings(Q10Settings) - Method in class org.neuroml.model.GateKS
+
+
Sets the value of the q10Settings property.
+
+
setQd0(String) - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
+
Sets the value of the qd0 property.
+
+
setR(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the r property.
+
+
setRandom(RandomLayout) - Method in class org.neuroml.model.Layout
+
+
Sets the value of the random property.
+
+
setRate(Float) - Method in class org.neuroml.model.HHVariable
+
+
Sets the value of the rate property.
+
+
setRate(String) - Method in class org.neuroml.model.HHRate
+
+
Sets the value of the rate property.
+
+
setRate(String) - Method in class org.neuroml.model.HHTime
+
+
Sets the value of the rate property.
+
+
setRate(String) - Method in class org.neuroml.model.SpikeSourcePoisson
+
+
Sets the value of the rate property.
+
+
setRefract(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the refract property.
+
+
setRefract(String) - Method in class org.neuroml.model.IafRefCell
+
+
Sets the value of the refract property.
+
+
setRefract(String) - Method in class org.neuroml.model.IafTauRefCell
+
+
Sets the value of the refract property.
+
+
setRegime(String) - Method in class org.neuroml.model.Transition
+
+
Sets the value of the regime property.
+
+
setRegion(String) - Method in class org.neuroml.model.RandomLayout
+
+
Sets the value of the region property.
+
+
setReset(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the reset property.
+
+
setReset(String) - Method in class org.neuroml.model.IafCell
+
+
Sets the value of the reset property.
+
+
setReset(String) - Method in class org.neuroml.model.IafTauCell
+
+
Sets the value of the reset property.
+
+
setRestingConc(String) - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
+
Sets the value of the restingConc property.
+
+
setRestingConc(String) - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
+
Sets the value of the restingConc property.
+
+
setReturnVoltage(String) - Method in class org.neuroml.model.VoltageClampTriple
+
+
Sets the value of the returnVoltage property.
+
+
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHRates
+
+
Sets the value of the reverseRate property.
+
+
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHRatesInf
+
+
Sets the value of the reverseRate property.
+
+
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHRatesTau
+
+
Sets the value of the reverseRate property.
+
+
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Sets the value of the reverseRate property.
+
+
setReverseRate(HHRate) - Method in class org.neuroml.model.GateHHUndetermined
+
+
Sets the value of the reverseRate property.
+
+
setRho(String) - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
+
Sets the value of the rho property.
+
+
setS(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the s property.
+
+
setScale(String) - Method in class org.neuroml.model.HHRate
+
+
Sets the value of the scale property.
+
+
setScale(String) - Method in class org.neuroml.model.HHTime
+
+
Sets the value of the scale property.
+
+
setScale(String) - Method in class org.neuroml.model.HHVariable
+
+
Sets the value of the scale property.
+
+
setScalingConc(String) - Method in class org.neuroml.model.BlockMechanism
+
+
Sets the value of the scalingConc property.
+
+
setScalingVolt(String) - Method in class org.neuroml.model.BlockMechanism
+
+
Sets the value of the scalingVolt property.
+
+
setSegment(Integer) - Method in class org.neuroml.model.ChannelDensity
+
+
Sets the value of the segment property.
+
+
setSegment(Integer) - Method in class org.neuroml.model.ChannelPopulation
+
+
Sets the value of the segment property.
+
+
setSegment(Integer) - Method in class org.neuroml.model.Member
+
+
Sets the value of the segment property.
+
+
setSegment(Integer) - Method in class org.neuroml.model.SegmentEndPoint
+
+
Sets the value of the segment property.
+
+
setSegment(Integer) - Method in class org.neuroml.model.SegmentParent
+
+
Sets the value of the segment property.
+
+
setSegment(String) - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Sets the value of the segment property.
+
+
setSegment(String) - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Sets the value of the segment property.
+
+
setSegment(String) - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Sets the value of the segment property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelDensity
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelDensityGHK
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelDensityGHK2
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelDensityNernst
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.ChannelPopulation
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.Include
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.InitMembPotential
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.Resistivity
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.Species
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.SpecificCapacitance
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.SpikeThresh
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentGroup(String) - Method in class org.neuroml.model.VariableParameter
+
+
Sets the value of the segmentGroup property.
+
+
setSegmentId(Integer) - Method in class org.neuroml.model.Input
+
+
Sets the value of the segmentId property.
+
+
setSelect(String) - Method in class org.neuroml.model.CellSet
+
+
Sets the value of the select property.
+
+
setSelect(String) - Method in class org.neuroml.model.DerivedVariable
+
+
Sets the value of the select property.
+
+
setShellThickness(String) - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
+
Sets the value of the shellThickness property.
+
+
setSimpleSeriesResistance(String) - Method in class org.neuroml.model.VoltageClamp
+
+
Sets the value of the simpleSeriesResistance property.
+
+
setSimpleSeriesResistance(String) - Method in class org.neuroml.model.VoltageClampTriple
+
+
Sets the value of the simpleSeriesResistance property.
+
+
setSize(Integer) - Method in class org.neuroml.model.Population
+
+
Sets the value of the size property.
+
+
setSource(String) - Method in class org.neuroml.model.ReactionScheme
+
+
Sets the value of the source property.
+
+
setSpace(String) - Method in class org.neuroml.model.Layout
+
+
Sets the value of the space property.
+
+
setSpace(String) - Method in class org.neuroml.model.Region
+
+
Sets the value of the space property.
+
+
setSpecies(String) - Method in class org.neuroml.model.BlockMechanism
+
+
Sets the value of the species property.
+
+
setSpecies(String) - Method in class org.neuroml.model.IonChannel
+
+
Sets the value of the species property.
+
+
setSpecies(String) - Method in class org.neuroml.model.IonChannelKS
+
+
Sets the value of the species property.
+
+
setSpikeTarget(String) - Method in class org.neuroml.model.PoissonFiringSynapse
+
+
Sets the value of the spikeTarget property.
+
+
setSpikeTarget(String) - Method in class org.neuroml.model.TimedSynapticInput
+
+
Sets the value of the spikeTarget property.
+
+
setSpikeTarget(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Sets the value of the spikeTarget property.
+
+
setStart(String) - Method in class org.neuroml.model.SpikeSourcePoisson
+
+
Sets the value of the start property.
+
+
setStartAmplitude(String) - Method in class org.neuroml.model.RampGenerator
+
+
Sets the value of the startAmplitude property.
+
+
setStartAmplitude(String) - Method in class org.neuroml.model.RampGeneratorDL
+
+
Sets the value of the startAmplitude property.
+
+
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Sets the value of the steadyState property.
+
+
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHInstantaneous
+
+
Sets the value of the steadyState property.
+
+
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHRatesInf
+
+
Sets the value of the steadyState property.
+
+
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Sets the value of the steadyState property.
+
+
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHTauInf
+
+
Sets the value of the steadyState property.
+
+
setSteadyState(HHVariable) - Method in class org.neuroml.model.GateHHUndetermined
+
+
Sets the value of the steadyState property.
+
+
setSteadyState(HHVariable) - Method in class org.neuroml.model.TauInfTransition
+
+
Sets the value of the steadyState property.
+
+
setStructure(SpaceStructure) - Method in class org.neuroml.model.Space
+
+
Sets the value of the structure property.
+
+
setSynapse(String) - Method in class org.neuroml.model.ElectricalConnection
+
+
Sets the value of the synapse property.
+
+
setSynapse(String) - Method in class org.neuroml.model.PoissonFiringSynapse
+
+
Sets the value of the synapse property.
+
+
setSynapse(String) - Method in class org.neuroml.model.Projection
+
+
Sets the value of the synapse property.
+
+
setSynapse(String) - Method in class org.neuroml.model.SynapticConnection
+
+
Sets the value of the synapse property.
+
+
setSynapse(String) - Method in class org.neuroml.model.TimedSynapticInput
+
+
Sets the value of the synapse property.
+
+
setSynapse(String) - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
+
Sets the value of the synapse property.
+
+
setSynapse1(String) - Method in class org.neuroml.model.DoubleSynapse
+
+
Sets the value of the synapse1 property.
+
+
setSynapse1Path(String) - Method in class org.neuroml.model.DoubleSynapse
+
+
Sets the value of the synapse1Path property.
+
+
setSynapse2(String) - Method in class org.neuroml.model.DoubleSynapse
+
+
Sets the value of the synapse2 property.
+
+
setSynapse2Path(String) - Method in class org.neuroml.model.DoubleSynapse
+
+
Sets the value of the synapse2Path property.
+
+
setTag(String) - Method in class org.neuroml.model.Property
+
+
Sets the value of the tag property.
+
+
setTarget(String) - Method in class org.neuroml.model.ExplicitInput
+
+
Sets the value of the target property.
+
+
setTarget(String) - Method in class org.neuroml.model.Input
+
+
Sets the value of the target property.
+
+
setTargetVoltage(String) - Method in class org.neuroml.model.VoltageClamp
+
+
Sets the value of the targetVoltage property.
+
+
setTau(String) - Method in class org.neuroml.model.AlphaCurrentSynapse
+
+
Sets the value of the tau property.
+
+
setTau(String) - Method in class org.neuroml.model.AlphaSynapse
+
+
Sets the value of the tau property.
+
+
setTau(String) - Method in class org.neuroml.model.HHTime
+
+
Sets the value of the tau property.
+
+
setTau(String) - Method in class org.neuroml.model.IafTauCell
+
+
Sets the value of the tau property.
+
+
setTauDecay(String) - Method in class org.neuroml.model.ExpOneSynapse
+
+
Sets the value of the tauDecay property.
+
+
setTauDecay(String) - Method in class org.neuroml.model.ExpTwoSynapse
+
+
Sets the value of the tauDecay property.
+
+
setTauDecay1(String) - Method in class org.neuroml.model.ExpThreeSynapse
+
+
Sets the value of the tauDecay1 property.
+
+
setTauDecay2(String) - Method in class org.neuroml.model.ExpThreeSynapse
+
+
Sets the value of the tauDecay2 property.
+
+
setTauFac(String) - Method in class org.neuroml.model.PlasticityMechanism
+
+
Sets the value of the tauFac property.
+
+
setTauM(float) - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Sets the value of the tauM property.
+
+
setTauRec(String) - Method in class org.neuroml.model.PlasticityMechanism
+
+
Sets the value of the tauRec property.
+
+
setTauRefrac(float) - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Sets the value of the tauRefrac property.
+
+
setTauRise(String) - Method in class org.neuroml.model.ExpThreeSynapse
+
+
Sets the value of the tauRise property.
+
+
setTauRise(String) - Method in class org.neuroml.model.ExpTwoSynapse
+
+
Sets the value of the tauRise property.
+
+
setTauSyn(float) - Method in class org.neuroml.model.BasePynnSynapse
+
+
Sets the value of the tauSyn property.
+
+
setTauSynE(float) - Method in class org.neuroml.model.BasePyNNCell
+
+
Sets the value of the tauSynE property.
+
+
setTauSynI(float) - Method in class org.neuroml.model.BasePyNNCell
+
+
Sets the value of the tauSynI property.
+
+
setTauw(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the tauw property.
+
+
setTauW(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Sets the value of the tauW property.
+
+
setTemperature(String) - Method in class org.neuroml.model.Network
+
+
Sets the value of the temperature property.
+
+
setTest(String) - Method in class org.neuroml.model.OnCondition
+
+
Sets the value of the test property.
+
+
setTestingVoltage(String) - Method in class org.neuroml.model.VoltageClampTriple
+
+
Sets the value of the testingVoltage property.
+
+
setThresh(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the thresh property.
+
+
setThresh(String) - Method in class org.neuroml.model.IafCell
+
+
Sets the value of the thresh property.
+
+
setThresh(String) - Method in class org.neuroml.model.IafTauCell
+
+
Sets the value of the thresh property.
+
+
setThresh(String) - Method in class org.neuroml.model.IzhikevichCell
+
+
Sets the value of the thresh property.
+
+
setTime(String) - Method in class org.neuroml.model.Spike
+
+
Sets the value of the time property.
+
+
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateFractionalSubgate
+
+
Sets the value of the timeCourse property.
+
+
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateHHRatesTau
+
+
Sets the value of the timeCourse property.
+
+
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateHHRatesTauInf
+
+
Sets the value of the timeCourse property.
+
+
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateHHTauInf
+
+
Sets the value of the timeCourse property.
+
+
setTimeCourse(HHTime) - Method in class org.neuroml.model.GateHHUndetermined
+
+
Sets the value of the timeCourse property.
+
+
setTimeCourse(HHTime) - Method in class org.neuroml.model.TauInfTransition
+
+
Sets the value of the timeCourse property.
+
+
setTo(String) - Method in class org.neuroml.model.ForwardTransition
+
+
Sets the value of the to property.
+
+
setTo(String) - Method in class org.neuroml.model.ReverseTransition
+
+
Sets the value of the to property.
+
+
setTo(String) - Method in class org.neuroml.model.SynapticConnection
+
+
Sets the value of the to property.
+
+
setTo(String) - Method in class org.neuroml.model.TauInfTransition
+
+
Sets the value of the to property.
+
+
setTo(SegmentEndPoint) - Method in class org.neuroml.model.Path
+
+
Sets the value of the to property.
+
+
setTo(SegmentEndPoint) - Method in class org.neuroml.model.SubTree
+
+
Sets the value of the to property.
+
+
setTransition(Transition) - Method in class org.neuroml.model.OnCondition
+
+
Sets the value of the transition property.
+
+
setTranslationStart(double) - Method in class org.neuroml.model.ProximalDetails
+
+
Sets the value of the translationStart property.
+
+
setType(String) - Method in class org.neuroml.model.ConcentrationModelD
+
+
Sets the value of the type property.
+
+
setType(String) - Method in class org.neuroml.model.HHRate
+
+
Sets the value of the type property.
+
+
setType(String) - Method in class org.neuroml.model.HHTime
+
+
Sets the value of the type property.
+
+
setType(String) - Method in class org.neuroml.model.HHVariable
+
+
Sets the value of the type property.
+
+
setType(String) - Method in class org.neuroml.model.InstanceRequirement
+
+
Sets the value of the type property.
+
+
setType(String) - Method in class org.neuroml.model.Q10Settings
+
+
Sets the value of the type property.
+
+
setType(String) - Method in class org.neuroml.model.ReactionScheme
+
+
Sets the value of the type property.
+
+
setType(BlockTypes) - Method in class org.neuroml.model.BlockMechanism
+
+
Sets the value of the type property.
+
+
setType(ChannelTypes) - Method in class org.neuroml.model.IonChannel
+
+
Sets the value of the type property.
+
+
setType(GateTypes) - Method in class org.neuroml.model.GateHHUndetermined
+
+
Sets the value of the type property.
+
+
setType(NetworkTypes) - Method in class org.neuroml.model.Network
+
+
Sets the value of the type property.
+
+
setType(PlasticityTypes) - Method in class org.neuroml.model.PlasticityMechanism
+
+
Sets the value of the type property.
+
+
setType(PopulationTypes) - Method in class org.neuroml.model.Population
+
+
Sets the value of the type property.
+
+
setUnstructured(UnstructuredLayout) - Method in class org.neuroml.model.Layout
+
+
Sets the value of the unstructured property.
+
+
setV0(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Sets the value of the v0 property.
+
+
setV0(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the v0 property.
+
+
setV0(String) - Method in class org.neuroml.model.IzhikevichCell
+
+
Sets the value of the v0 property.
+
+
setValue(String) - Method in class org.neuroml.model.Case
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.Constant
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.DerivedParameter
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.DerivedVariable
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.InhomogeneousValue
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.InitMembPotential
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.Property
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.Resistivity
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.SpecificCapacitance
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.SpikeThresh
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.StateAssignment
+
+
Sets the value of the value property.
+
+
setValue(String) - Method in class org.neuroml.model.TimeDerivative
+
+
Sets the value of the value property.
+
+
setVariable(String) - Method in class org.neuroml.model.InhomogeneousParameter
+
+
Sets the value of the variable property.
+
+
setVariable(String) - Method in class org.neuroml.model.StateAssignment
+
+
Sets the value of the variable property.
+
+
setVariable(String) - Method in class org.neuroml.model.TimeDerivative
+
+
Sets the value of the variable property.
+
+
setVerbose(boolean) - Static method in class org.neuroml.model.util.hdf5.Hdf5Utils
+
 
+
setVerbose(boolean) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
setVInit(float) - Method in class org.neuroml.model.BasePyNNCell
+
+
Sets the value of the vInit property.
+
+
setVOffset(float) - Method in class org.neuroml.model.HHCondExp
+
+
Sets the value of the vOffset property.
+
+
setVpeak(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the vpeak property.
+
+
setVr(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the vr property.
+
+
setVReset(float) - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Sets the value of the vReset property.
+
+
setVRest(float) - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Sets the value of the vRest property.
+
+
setVScaling(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the vScaling property.
+
+
setVShift(String) - Method in class org.neuroml.model.ChannelDensityVShift
+
+
Sets the value of the vShift property.
+
+
setVShift(String) - Method in class org.neuroml.model.IonChannelVShift
+
+
Sets the value of the vShift property.
+
+
setVSpike(float) - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
+
Sets the value of the vSpike property.
+
+
setVt(String) - Method in class org.neuroml.model.Izhikevich2007Cell
+
+
Sets the value of the vt property.
+
+
setVT(String) - Method in class org.neuroml.model.AdExIaFCell
+
+
Sets the value of the vt property.
+
+
setVth(String) - Method in class org.neuroml.model.GradedSynapse
+
+
Sets the value of the vth property.
+
+
setVThresh(float) - Method in class org.neuroml.model.BasePyNNIaFCell
+
+
Sets the value of the vThresh property.
+
+
setW0(String) - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
+
Sets the value of the w0 property.
+
+
setWeight(float) - Method in class org.neuroml.model.ConnectionWD
+
+
Sets the value of the weight property.
+
+
setWeight(float) - Method in class org.neuroml.model.ContinuousConnectionInstanceW
+
+
Sets the value of the weight property.
+
+
setWeight(float) - Method in class org.neuroml.model.ElectricalConnectionInstanceW
+
+
Sets the value of the weight property.
+
+
setWeight(float) - Method in class org.neuroml.model.InputW
+
+
Sets the value of the weight property.
+
+
setX(double) - Method in class org.neuroml.model.Point3DWithDiam
+
+
Sets the value of the x property.
+
+
setX(float) - Method in class org.neuroml.model.Location
+
+
Sets the value of the x property.
+
+
setX0(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the x0 property.
+
+
setX1(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the x1 property.
+
+
setXSize(BigInteger) - Method in class org.neuroml.model.GridLayout
+
+
Sets the value of the xSize property.
+
+
setXSpacing(Float) - Method in class org.neuroml.model.SpaceStructure
+
+
Sets the value of the xSpacing property.
+
+
setXStart(Float) - Method in class org.neuroml.model.SpaceStructure
+
+
Sets the value of the xStart property.
+
+
setY(double) - Method in class org.neuroml.model.Point3DWithDiam
+
+
Sets the value of the y property.
+
+
setY(float) - Method in class org.neuroml.model.Location
+
+
Sets the value of the y property.
+
+
setY0(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the y0 property.
+
+
setYSize(BigInteger) - Method in class org.neuroml.model.GridLayout
+
+
Sets the value of the ySize property.
+
+
setYSpacing(Float) - Method in class org.neuroml.model.SpaceStructure
+
+
Sets the value of the ySpacing property.
+
+
setYStart(Float) - Method in class org.neuroml.model.SpaceStructure
+
+
Sets the value of the yStart property.
+
+
setZ(double) - Method in class org.neuroml.model.Point3DWithDiam
+
+
Sets the value of the z property.
+
+
setZ(float) - Method in class org.neuroml.model.Location
+
+
Sets the value of the z property.
+
+
setZ0(String) - Method in class org.neuroml.model.HindmarshRose1984Cell
+
+
Sets the value of the z0 property.
+
+
setZSize(BigInteger) - Method in class org.neuroml.model.GridLayout
+
+
Sets the value of the zSize property.
+
+
setZSpacing(Float) - Method in class org.neuroml.model.SpaceStructure
+
+
Sets the value of the zSpacing property.
+
+
setZStart(Float) - Method in class org.neuroml.model.SpaceStructure
+
+
Sets the value of the zStart property.
+
+
shellThickness - Variable in class org.neuroml.model.DecayingPoolConcentrationModel
+
 
+
silentSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SilentSynapse - Class in org.neuroml.model
+
+
Dummy synapse which emits no current.
+
+
SilentSynapse() - Constructor for class org.neuroml.model.SilentSynapse
+
 
+
simpleSeriesResistance - Variable in class org.neuroml.model.VoltageClamp
+
 
+
simpleSeriesResistance - Variable in class org.neuroml.model.VoltageClampTriple
+
 
+
sineGenerator - Variable in class org.neuroml.model.CompoundInput
+
 
+
sineGenerator - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SineGenerator - Class in org.neuroml.model
+
+
Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
+
+
SineGenerator() - Constructor for class org.neuroml.model.SineGenerator
+
 
+
sineGeneratorDL - Variable in class org.neuroml.model.CompoundInputDL
+
 
+
sineGeneratorDL - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SineGeneratorDL - Class in org.neuroml.model
+
+
Dimensionless equivalent of **sineGenerator** .
+
+
SineGeneratorDL() - Constructor for class org.neuroml.model.SineGeneratorDL
+
 
+
size - Variable in class org.neuroml.model.Population
+
 
+
source - Variable in class org.neuroml.model.ReactionScheme
+
 
+
space - Variable in class org.neuroml.model.Layout
+
 
+
space - Variable in class org.neuroml.model.Network
+
 
+
space - Variable in class org.neuroml.model.Region
+
 
+
Space - Class in org.neuroml.model
+
+
Java class for Space complex type.
+
+
Space() - Constructor for class org.neuroml.model.Space
+
 
+
SpaceStructure - Class in org.neuroml.model
+
+
Java class for SpaceStructure complex type.
+
+
SpaceStructure() - Constructor for class org.neuroml.model.SpaceStructure
+
 
+
species - Variable in class org.neuroml.model.BlockMechanism
+
 
+
species - Variable in class org.neuroml.model.ExtracellularProperties
+
 
+
species - Variable in class org.neuroml.model.ExtracellularPropertiesLocal
+
 
+
species - Variable in class org.neuroml.model.IntracellularProperties
+
 
+
species - Variable in class org.neuroml.model.IonChannel
+
 
+
species - Variable in class org.neuroml.model.IonChannelKS
+
 
+
Species - Class in org.neuroml.model
+
+
Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration + \n + :param initialConcentration: + :type initialConcentration: concentration + :param initialExtConcentration: + :type initialExtConcentration: concentration
+
+
Species() - Constructor for class org.neuroml.model.Species
+
 
+
specificCapacitance - Variable in class org.neuroml.model.MembraneProperties
+
 
+
SpecificCapacitance - Class in org.neuroml.model
+
+
Capacitance per unit area + \n + :param value: + :type value: specificCapacitance
+
+
SpecificCapacitance() - Constructor for class org.neuroml.model.SpecificCapacitance
+
 
+
spike - Variable in class org.neuroml.model.SpikeArray
+
 
+
spike - Variable in class org.neuroml.model.TimedSynapticInput
+
 
+
Spike - Class in org.neuroml.model
+
+
Emits a single spike at the specified **time** + \n + :param time: Time at which to emit one spike event + :type time: time
+
+
Spike() - Constructor for class org.neuroml.model.Spike
+
 
+
SPIKE_ARRAY - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
SPIKE_GENERATOR - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
spikeArray - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SpikeArray - Class in org.neuroml.model
+
+
Set of spike ComponentTypes, each emitting one spike at a certain time.
+
+
SpikeArray() - Constructor for class org.neuroml.model.SpikeArray
+
 
+
spikeGenerator - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SpikeGenerator - Class in org.neuroml.model
+
+
Simple generator of spikes at a regular interval set by **period** + \n + :param period: Time between spikes.
+
+
SpikeGenerator() - Constructor for class org.neuroml.model.SpikeGenerator
+
 
+
spikeGeneratorPoisson - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SpikeGeneratorPoisson - Class in org.neuroml.model
+
+
Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
+
+
SpikeGeneratorPoisson() - Constructor for class org.neuroml.model.SpikeGeneratorPoisson
+
 
+
spikeGeneratorRandom - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SpikeGeneratorRandom - Class in org.neuroml.model
+
+
Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** + \n + :param maxISI: Maximum interspike interval + :type maxISI: time + :param minISI: Minimum interspike interval + :type minISI: time
+
+
SpikeGeneratorRandom() - Constructor for class org.neuroml.model.SpikeGeneratorRandom
+
 
+
spikeGeneratorRefPoisson - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SpikeGeneratorRefPoisson - Class in org.neuroml.model
+
+
Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** + \n + :param minimumISI: The minimum interspike interval + :type minimumISI: time + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
+
+
SpikeGeneratorRefPoisson() - Constructor for class org.neuroml.model.SpikeGeneratorRefPoisson
+
 
+
spikeSourcePoisson - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
SpikeSourcePoisson - Class in org.neuroml.model
+
+
Spike source, generating spikes according to a Poisson process.
+
+
SpikeSourcePoisson() - Constructor for class org.neuroml.model.SpikeSourcePoisson
+
 
+
spikeTarget - Variable in class org.neuroml.model.PoissonFiringSynapse
+
 
+
spikeTarget - Variable in class org.neuroml.model.TimedSynapticInput
+
 
+
spikeTarget - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
spikeThresh - Variable in class org.neuroml.model.MembraneProperties
+
 
+
SpikeThresh - Class in org.neuroml.model
+
+
Membrane potential at which to emit a spiking event.
+
+
SpikeThresh() - Constructor for class org.neuroml.model.SpikeThresh
+
 
+
Standalone - Class in org.neuroml.model
+
+
Elements which can stand alone and be referenced by id, e.g.
+
+
Standalone() - Constructor for class org.neuroml.model.Standalone
+
 
+
StandardTest - Class in org.neuroml.model.util
+
 
+
StandardTest(int, String) - Constructor for class org.neuroml.model.util.StandardTest
+
 
+
StandardTest(int, String, StandardTest.LEVEL) - Constructor for class org.neuroml.model.util.StandardTest
+
 
+
StandardTest.LEVEL - Enum in org.neuroml.model.util
+
 
+
start - Variable in class org.neuroml.model.SpikeSourcePoisson
+
 
+
startAmplitude - Variable in class org.neuroml.model.RampGenerator
+
 
+
startAmplitude - Variable in class org.neuroml.model.RampGeneratorDL
+
 
+
startGroup(Group) - Method in class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
 
+
stateAssignment - Variable in class org.neuroml.model.OnCondition
+
 
+
stateAssignment - Variable in class org.neuroml.model.OnEntry
+
 
+
stateAssignment - Variable in class org.neuroml.model.OnEvent
+
 
+
stateAssignment - Variable in class org.neuroml.model.OnStart
+
 
+
StateAssignment - Class in org.neuroml.model
+
+
Java class for StateAssignment complex type.
+
+
StateAssignment() - Constructor for class org.neuroml.model.StateAssignment
+
 
+
stateVariable - Variable in class org.neuroml.model.Dynamics
+
 
+
StateVariable - Class in org.neuroml.model
+
+
Java class for StateVariable complex type.
+
+
StateVariable() - Constructor for class org.neuroml.model.StateVariable
+
 
+
steadyState - Variable in class org.neuroml.model.GateFractionalSubgate
+
 
+
steadyState - Variable in class org.neuroml.model.GateHHInstantaneous
+
 
+
steadyState - Variable in class org.neuroml.model.GateHHRatesInf
+
 
+
steadyState - Variable in class org.neuroml.model.GateHHRatesTauInf
+
 
+
steadyState - Variable in class org.neuroml.model.GateHHTauInf
+
 
+
steadyState - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
steadyState - Variable in class org.neuroml.model.TauInfTransition
+
 
+
structure - Variable in class org.neuroml.model.Space
+
 
+
subGate - Variable in class org.neuroml.model.GateFractional
+
 
+
subGate - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
subTree - Variable in class org.neuroml.model.SegmentGroup
+
 
+
SubTree - Class in org.neuroml.model
+
+
Include all the **segment** s distal to that specified by **from** in the **segmentGroup**
+
+
SubTree() - Constructor for class org.neuroml.model.SubTree
+
 
+
summary(NeuroMLDocument) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
summary(NeuroMLDocument, boolean) - Static method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
synapse - Variable in class org.neuroml.model.ElectricalConnection
+
 
+
synapse - Variable in class org.neuroml.model.PoissonFiringSynapse
+
 
+
synapse - Variable in class org.neuroml.model.Projection
+
 
+
synapse - Variable in class org.neuroml.model.SynapticConnection
+
 
+
synapse - Variable in class org.neuroml.model.TimedSynapticInput
+
 
+
synapse - Variable in class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
SYNAPSE_PORT_IN - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
synapse1 - Variable in class org.neuroml.model.DoubleSynapse
+
 
+
synapse1Path - Variable in class org.neuroml.model.DoubleSynapse
+
 
+
synapse2 - Variable in class org.neuroml.model.DoubleSynapse
+
 
+
synapse2Path - Variable in class org.neuroml.model.DoubleSynapse
+
 
+
synapticConnection - Variable in class org.neuroml.model.Network
+
 
+
SynapticConnection - Class in org.neuroml.model
+
+
Explicit event connection between named components, which gets processed via a new instance of a **synapse** component which is created on the target component
+
+
SynapticConnection() - Constructor for class org.neuroml.model.SynapticConnection
+
 
+
+

T

+
+
tag - Variable in class org.neuroml.model.Property
+
 
+
target - Variable in class org.neuroml.model.ExplicitInput
+
 
+
target - Variable in class org.neuroml.model.Input
+
 
+
targetVoltage - Variable in class org.neuroml.model.VoltageClamp
+
 
+
tau - Variable in class org.neuroml.model.AlphaCurrentSynapse
+
 
+
tau - Variable in class org.neuroml.model.AlphaSynapse
+
 
+
tau - Variable in class org.neuroml.model.HHTime
+
 
+
tau - Variable in class org.neuroml.model.IafTauCell
+
 
+
tauDecay - Variable in class org.neuroml.model.ExpOneSynapse
+
 
+
tauDecay - Variable in class org.neuroml.model.ExpTwoSynapse
+
 
+
tauDecay1 - Variable in class org.neuroml.model.ExpThreeSynapse
+
 
+
tauDecay2 - Variable in class org.neuroml.model.ExpThreeSynapse
+
 
+
tauFac - Variable in class org.neuroml.model.PlasticityMechanism
+
 
+
TauInfTransition - Class in org.neuroml.model
+
+
KS Transition specified in terms of time constant **tau** and steady state **inf**
+
+
TauInfTransition() - Constructor for class org.neuroml.model.TauInfTransition
+
 
+
tauM - Variable in class org.neuroml.model.BasePyNNIaFCell
+
 
+
tauRec - Variable in class org.neuroml.model.PlasticityMechanism
+
 
+
tauRefrac - Variable in class org.neuroml.model.BasePyNNIaFCell
+
 
+
tauRise - Variable in class org.neuroml.model.ExpThreeSynapse
+
 
+
tauRise - Variable in class org.neuroml.model.ExpTwoSynapse
+
 
+
tauSyn - Variable in class org.neuroml.model.BasePynnSynapse
+
 
+
tauSynE - Variable in class org.neuroml.model.BasePyNNCell
+
 
+
tauSynI - Variable in class org.neuroml.model.BasePyNNCell
+
 
+
tauw - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
tauW - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
TEMP_NAMESPACE - Static variable in class org.neuroml.model.util.NeuroMLNamespacePrefixMapper
+
 
+
temperature - Variable in class org.neuroml.model.Network
+
 
+
TEMPERATURE - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
TEMPERATURE_DIM - Static variable in class org.neuroml.model.util.NeuroMLElements
+
 
+
test - Variable in class org.neuroml.model.OnCondition
+
 
+
TEST_CONC_MODEL_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_FORMATTING_CELL_ID_IN_CONNECTION - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_INCLUDE_SEGMENT_GROUP_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_INCLUDED_FILES_EXIST - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_ION_CHANNEL_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_MEMBER_SEGMENT_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_NETWORK_REPEATED_IDS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_NUM_INT_DIVS_SEGMENT_GROUP - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_ONE_SEG_MISSING_PARENT - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_POPULATION_COMPONENT_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_POPULATION_SIZE_MATCHES_INSTANCES - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_POPULATIONS_IN_PROJECTIONS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_REPEATED_GROUPS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_REPEATED_IDS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_SEGMENT_GROUP_IN_BIOPHYSICS_EXISTS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_SEGMENT_ID_IN_CONNECTION - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_SYNAPSE_IN_PROJECTION - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
TEST_TOP_LEVEL_REPEATED_IDS - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
testingVoltage - Variable in class org.neuroml.model.VoltageClampTriple
+
 
+
testValidity(File, String) - Static method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
testValidity(File, StreamSource) - Static method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
testValidityAgainstNeuroML2Schema(File) - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
thresh - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
thresh - Variable in class org.neuroml.model.IafCell
+
 
+
thresh - Variable in class org.neuroml.model.IafTauCell
+
 
+
thresh - Variable in class org.neuroml.model.IzhikevichCell
+
 
+
time - Variable in class org.neuroml.model.Spike
+
 
+
timeCourse - Variable in class org.neuroml.model.GateFractionalSubgate
+
 
+
timeCourse - Variable in class org.neuroml.model.GateHHRatesTau
+
 
+
timeCourse - Variable in class org.neuroml.model.GateHHRatesTauInf
+
 
+
timeCourse - Variable in class org.neuroml.model.GateHHTauInf
+
 
+
timeCourse - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
timeCourse - Variable in class org.neuroml.model.TauInfTransition
+
 
+
timeDerivative - Variable in class org.neuroml.model.Dynamics
+
 
+
timeDerivative - Variable in class org.neuroml.model.Regime
+
 
+
TimeDerivative - Class in org.neuroml.model
+
+
Java class for TimeDerivative complex type.
+
+
TimeDerivative() - Constructor for class org.neuroml.model.TimeDerivative
+
 
+
timedSynapticInput - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
TimedSynapticInput - Class in org.neuroml.model
+
+
Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
+
+
TimedSynapticInput() - Constructor for class org.neuroml.model.TimedSynapticInput
+
 
+
to - Variable in class org.neuroml.model.ForwardTransition
+
 
+
to - Variable in class org.neuroml.model.Path
+
 
+
to - Variable in class org.neuroml.model.ReverseTransition
+
 
+
to - Variable in class org.neuroml.model.SubTree
+
 
+
to - Variable in class org.neuroml.model.SynapticConnection
+
 
+
to - Variable in class org.neuroml.model.TauInfTransition
+
 
+
toString() - Method in class org.neuroml.model.AdExIaFCell
+
 
+
toString() - Method in class org.neuroml.model.AlphaCondSynapse
+
 
+
toString() - Method in class org.neuroml.model.AlphaCurrentSynapse
+
 
+
toString() - Method in class org.neuroml.model.AlphaCurrSynapse
+
 
+
toString() - Method in class org.neuroml.model.AlphaSynapse
+
 
+
toString() - Method in class org.neuroml.model.Annotation
+
 
+
toString() - Method in class org.neuroml.model.Base
+
 
+
toString() - Method in class org.neuroml.model.BaseCell
+
 
+
toString() - Method in class org.neuroml.model.BaseCellMembPotCap
+
 
+
toString() - Method in class org.neuroml.model.BaseConductanceBasedSynapse
+
 
+
toString() - Method in class org.neuroml.model.BaseConductanceBasedSynapseTwo
+
 
+
toString() - Method in class org.neuroml.model.BaseConnection
+
 
+
toString() - Method in class org.neuroml.model.BaseConnectionNewFormat
+
 
+
toString() - Method in class org.neuroml.model.BaseConnectionOldFormat
+
 
+
toString() - Method in class org.neuroml.model.BaseCurrentBasedSynapse
+
 
+
toString() - Method in class org.neuroml.model.BaseNonNegativeIntegerId
+
 
+
toString() - Method in class org.neuroml.model.BaseProjection
+
 
+
toString() - Method in class org.neuroml.model.BasePyNNCell
+
 
+
toString() - Method in class org.neuroml.model.BasePyNNIaFCell
+
 
+
toString() - Method in class org.neuroml.model.BasePyNNIaFCondCell
+
 
+
toString() - Method in class org.neuroml.model.BasePynnSynapse
+
 
+
toString() - Method in class org.neuroml.model.BaseSynapse
+
 
+
toString() - Method in class org.neuroml.model.BaseVoltageDepSynapse
+
 
+
toString() - Method in class org.neuroml.model.BaseWithoutId
+
 
+
toString() - Method in class org.neuroml.model.BiophysicalProperties
+
 
+
toString() - Method in class org.neuroml.model.BiophysicalProperties2CaPools
+
 
+
toString() - Method in class org.neuroml.model.BlockingPlasticSynapse
+
 
+
toString() - Method in class org.neuroml.model.BlockMechanism
+
 
+
toString() - Method in class org.neuroml.model.Case
+
 
+
toString() - Method in class org.neuroml.model.Cell
+
 
+
toString() - Method in class org.neuroml.model.Cell2CaPools
+
 
+
toString() - Method in class org.neuroml.model.CellSet
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensity
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensityGHK
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensityGHK2
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensityNernst
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensityNernstCa2
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensityNonUniform
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensityNonUniformGHK
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensityNonUniformNernst
+
 
+
toString() - Method in class org.neuroml.model.ChannelDensityVShift
+
 
+
toString() - Method in class org.neuroml.model.ChannelPopulation
+
 
+
toString() - Method in class org.neuroml.model.ClosedState
+
 
+
toString() - Method in class org.neuroml.model.ComponentType
+
 
+
toString() - Method in class org.neuroml.model.CompoundInput
+
 
+
toString() - Method in class org.neuroml.model.CompoundInputDL
+
 
+
toString() - Method in class org.neuroml.model.ConcentrationModelD
+
 
+
toString() - Method in class org.neuroml.model.ConditionalDerivedVariable
+
 
+
toString() - Method in class org.neuroml.model.Connection
+
 
+
toString() - Method in class org.neuroml.model.ConnectionWD
+
 
+
toString() - Method in class org.neuroml.model.Constant
+
 
+
toString() - Method in class org.neuroml.model.ContinuousConnection
+
 
+
toString() - Method in class org.neuroml.model.ContinuousConnectionInstance
+
 
+
toString() - Method in class org.neuroml.model.ContinuousConnectionInstanceW
+
 
+
toString() - Method in class org.neuroml.model.ContinuousProjection
+
 
+
toString() - Method in class org.neuroml.model.DecayingPoolConcentrationModel
+
 
+
toString() - Method in class org.neuroml.model.DerivedParameter
+
 
+
toString() - Method in class org.neuroml.model.DerivedVariable
+
 
+
toString() - Method in class org.neuroml.model.DistalDetails
+
 
+
toString() - Method in class org.neuroml.model.DoubleSynapse
+
 
+
toString() - Method in class org.neuroml.model.Dynamics
+
 
+
toString() - Method in class org.neuroml.model.EIFCondAlphaIsfaIsta
+
 
+
toString() - Method in class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
toString() - Method in class org.neuroml.model.ElectricalConnection
+
 
+
toString() - Method in class org.neuroml.model.ElectricalConnectionInstance
+
 
+
toString() - Method in class org.neuroml.model.ElectricalConnectionInstanceW
+
 
+
toString() - Method in class org.neuroml.model.ElectricalProjection
+
 
+
toString() - Method in class org.neuroml.model.EventOut
+
 
+
toString() - Method in class org.neuroml.model.ExpCondSynapse
+
 
+
toString() - Method in class org.neuroml.model.ExpCurrSynapse
+
 
+
toString() - Method in class org.neuroml.model.ExplicitInput
+
 
+
toString() - Method in class org.neuroml.model.ExpOneSynapse
+
 
+
toString() - Method in class org.neuroml.model.Exposure
+
 
+
toString() - Method in class org.neuroml.model.ExpThreeSynapse
+
 
+
toString() - Method in class org.neuroml.model.ExpTwoSynapse
+
 
+
toString() - Method in class org.neuroml.model.ExtracellularProperties
+
 
+
toString() - Method in class org.neuroml.model.ExtracellularPropertiesLocal
+
 
+
toString() - Method in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
toString() - Method in class org.neuroml.model.FitzHughNagumoCell
+
 
+
toString() - Method in class org.neuroml.model.FixedFactorConcentrationModel
+
 
+
toString() - Method in class org.neuroml.model.ForwardTransition
+
 
+
toString() - Method in class org.neuroml.model.GapJunction
+
 
+
toString() - Method in class org.neuroml.model.GateFractional
+
 
+
toString() - Method in class org.neuroml.model.GateFractionalSubgate
+
 
+
toString() - Method in class org.neuroml.model.GateHHInstantaneous
+
 
+
toString() - Method in class org.neuroml.model.GateHHRates
+
 
+
toString() - Method in class org.neuroml.model.GateHHRatesInf
+
 
+
toString() - Method in class org.neuroml.model.GateHHRatesTau
+
 
+
toString() - Method in class org.neuroml.model.GateHHRatesTauInf
+
 
+
toString() - Method in class org.neuroml.model.GateHHTauInf
+
 
+
toString() - Method in class org.neuroml.model.GateHHUndetermined
+
 
+
toString() - Method in class org.neuroml.model.GateKS
+
 
+
toString() - Method in class org.neuroml.model.GradedSynapse
+
 
+
toString() - Method in class org.neuroml.model.GridLayout
+
 
+
toString() - Method in class org.neuroml.model.HHCondExp
+
 
+
toString() - Method in class org.neuroml.model.HHRate
+
 
+
toString() - Method in class org.neuroml.model.HHTime
+
 
+
toString() - Method in class org.neuroml.model.HHVariable
+
 
+
toString() - Method in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
toString() - Method in class org.neuroml.model.IafCell
+
 
+
toString() - Method in class org.neuroml.model.IafRefCell
+
 
+
toString() - Method in class org.neuroml.model.IafTauCell
+
 
+
toString() - Method in class org.neuroml.model.IafTauRefCell
+
 
+
toString() - Method in class org.neuroml.model.IFCondAlpha
+
 
+
toString() - Method in class org.neuroml.model.IFCondExp
+
 
+
toString() - Method in class org.neuroml.model.IFCurrAlpha
+
 
+
toString() - Method in class org.neuroml.model.IFCurrExp
+
 
+
toString() - Method in class org.neuroml.model.Include
+
 
+
toString() - Method in class org.neuroml.model.IncludeType
+
 
+
toString() - Method in class org.neuroml.model.InhomogeneousParameter
+
 
+
toString() - Method in class org.neuroml.model.InhomogeneousValue
+
 
+
toString() - Method in class org.neuroml.model.InitMembPotential
+
 
+
toString() - Method in class org.neuroml.model.Input
+
 
+
toString() - Method in class org.neuroml.model.InputList
+
 
+
toString() - Method in class org.neuroml.model.InputW
+
 
+
toString() - Method in class org.neuroml.model.Instance
+
 
+
toString() - Method in class org.neuroml.model.InstanceRequirement
+
 
+
toString() - Method in class org.neuroml.model.IntracellularProperties
+
 
+
toString() - Method in class org.neuroml.model.IntracellularProperties2CaPools
+
 
+
toString() - Method in class org.neuroml.model.IonChannel
+
 
+
toString() - Method in class org.neuroml.model.IonChannelHH
+
 
+
toString() - Method in class org.neuroml.model.IonChannelKS
+
 
+
toString() - Method in class org.neuroml.model.IonChannelScalable
+
 
+
toString() - Method in class org.neuroml.model.IonChannelVShift
+
 
+
toString() - Method in class org.neuroml.model.Izhikevich2007Cell
+
 
+
toString() - Method in class org.neuroml.model.IzhikevichCell
+
 
+
toString() - Method in class org.neuroml.model.Layout
+
 
+
toString() - Method in class org.neuroml.model.LEMSProperty
+
 
+
toString() - Method in class org.neuroml.model.LinearGradedSynapse
+
 
+
toString() - Method in class org.neuroml.model.Location
+
 
+
toString() - Method in class org.neuroml.model.Member
+
 
+
toString() - Method in class org.neuroml.model.MembraneProperties
+
 
+
toString() - Method in class org.neuroml.model.MembraneProperties2CaPools
+
 
+
toString() - Method in class org.neuroml.model.Morphology
+
 
+
toString() - Method in class org.neuroml.model.NamedDimensionalType
+
 
+
toString() - Method in class org.neuroml.model.NamedDimensionalVariable
+
 
+
toString() - Method in class org.neuroml.model.Network
+
 
+
toString() - Method in class org.neuroml.model.NeuroMLDocument
+
 
+
toString() - Method in class org.neuroml.model.OnCondition
+
 
+
toString() - Method in class org.neuroml.model.OnEntry
+
 
+
toString() - Method in class org.neuroml.model.OnEvent
+
 
+
toString() - Method in class org.neuroml.model.OnStart
+
 
+
toString() - Method in class org.neuroml.model.OpenState
+
 
+
toString() - Method in class org.neuroml.model.Parameter
+
 
+
toString() - Method in class org.neuroml.model.Path
+
 
+
toString() - Method in class org.neuroml.model.PinskyRinzelCA3Cell
+
 
+
toString() - Method in class org.neuroml.model.PlasticityMechanism
+
 
+
toString() - Method in class org.neuroml.model.Point3DWithDiam
+
 
+
toString() - Method in class org.neuroml.model.PoissonFiringSynapse
+
 
+
toString() - Method in class org.neuroml.model.Population
+
 
+
toString() - Method in class org.neuroml.model.Projection
+
 
+
toString() - Method in class org.neuroml.model.Property
+
 
+
toString() - Method in class org.neuroml.model.ProximalDetails
+
 
+
toString() - Method in class org.neuroml.model.PulseGenerator
+
 
+
toString() - Method in class org.neuroml.model.PulseGeneratorDL
+
 
+
toString() - Method in class org.neuroml.model.Q10ConductanceScaling
+
 
+
toString() - Method in class org.neuroml.model.Q10Settings
+
 
+
toString() - Method in class org.neuroml.model.RampGenerator
+
 
+
toString() - Method in class org.neuroml.model.RampGeneratorDL
+
 
+
toString() - Method in class org.neuroml.model.RandomLayout
+
 
+
toString() - Method in class org.neuroml.model.ReactionScheme
+
 
+
toString() - Method in class org.neuroml.model.Regime
+
 
+
toString() - Method in class org.neuroml.model.Region
+
 
+
toString() - Method in class org.neuroml.model.Requirement
+
 
+
toString() - Method in class org.neuroml.model.Resistivity
+
 
+
toString() - Method in class org.neuroml.model.ReverseTransition
+
 
+
toString() - Method in class org.neuroml.model.Segment
+
 
+
toString() - Method in class org.neuroml.model.SegmentEndPoint
+
 
+
toString() - Method in class org.neuroml.model.SegmentGroup
+
 
+
toString() - Method in class org.neuroml.model.SegmentParent
+
 
+
toString() - Method in class org.neuroml.model.SilentSynapse
+
 
+
toString() - Method in class org.neuroml.model.SineGenerator
+
 
+
toString() - Method in class org.neuroml.model.SineGeneratorDL
+
 
+
toString() - Method in class org.neuroml.model.Space
+
 
+
toString() - Method in class org.neuroml.model.SpaceStructure
+
 
+
toString() - Method in class org.neuroml.model.Species
+
 
+
toString() - Method in class org.neuroml.model.SpecificCapacitance
+
 
+
toString() - Method in class org.neuroml.model.Spike
+
 
+
toString() - Method in class org.neuroml.model.SpikeArray
+
 
+
toString() - Method in class org.neuroml.model.SpikeGenerator
+
 
+
toString() - Method in class org.neuroml.model.SpikeGeneratorPoisson
+
 
+
toString() - Method in class org.neuroml.model.SpikeGeneratorRandom
+
 
+
toString() - Method in class org.neuroml.model.SpikeGeneratorRefPoisson
+
 
+
toString() - Method in class org.neuroml.model.SpikeSourcePoisson
+
 
+
toString() - Method in class org.neuroml.model.SpikeThresh
+
 
+
toString() - Method in class org.neuroml.model.Standalone
+
 
+
toString() - Method in class org.neuroml.model.StateAssignment
+
 
+
toString() - Method in class org.neuroml.model.StateVariable
+
 
+
toString() - Method in class org.neuroml.model.SubTree
+
 
+
toString() - Method in class org.neuroml.model.SynapticConnection
+
 
+
toString() - Method in class org.neuroml.model.TauInfTransition
+
 
+
toString() - Method in class org.neuroml.model.TimeDerivative
+
 
+
toString() - Method in class org.neuroml.model.TimedSynapticInput
+
 
+
toString() - Method in class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
toString() - Method in class org.neuroml.model.Transition
+
 
+
toString() - Method in class org.neuroml.model.UnstructuredLayout
+
 
+
toString() - Method in class org.neuroml.model.util.hdf5.NetworkHelper
+
 
+
toString() - Method in class org.neuroml.model.VariableParameter
+
 
+
toString() - Method in class org.neuroml.model.VoltageClamp
+
 
+
toString() - Method in class org.neuroml.model.VoltageClampTriple
+
 
+
transientPoissonFiringSynapse - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
TransientPoissonFiringSynapse - Class in org.neuroml.model
+
+
Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
+
+
TransientPoissonFiringSynapse() - Constructor for class org.neuroml.model.TransientPoissonFiringSynapse
+
 
+
transition - Variable in class org.neuroml.model.OnCondition
+
 
+
Transition - Class in org.neuroml.model
+
+
Java class for Transition complex type.
+
+
Transition() - Constructor for class org.neuroml.model.Transition
+
 
+
translationStart - Variable in class org.neuroml.model.ProximalDetails
+
 
+
TRUE - Enum constant in enum org.neuroml.model.TrueOrFalse
+
 
+
TrueOrFalse - Enum in org.neuroml.model
+
+
Java class for TrueOrFalse.
+
+
TSODYKS_MARKRAM_DEP_FAC_MECHANISM - Enum constant in enum org.neuroml.model.PlasticityTypes
+
 
+
TSODYKS_MARKRAM_DEP_MECHANISM - Enum constant in enum org.neuroml.model.PlasticityTypes
+
 
+
type - Variable in class org.neuroml.model.BlockMechanism
+
 
+
type - Variable in class org.neuroml.model.ConcentrationModelD
+
 
+
type - Variable in class org.neuroml.model.GateHHUndetermined
+
 
+
type - Variable in class org.neuroml.model.HHRate
+
 
+
type - Variable in class org.neuroml.model.HHTime
+
 
+
type - Variable in class org.neuroml.model.HHVariable
+
 
+
type - Variable in class org.neuroml.model.InstanceRequirement
+
 
+
type - Variable in class org.neuroml.model.IonChannel
+
 
+
type - Variable in class org.neuroml.model.Network
+
 
+
type - Variable in class org.neuroml.model.PlasticityMechanism
+
 
+
type - Variable in class org.neuroml.model.Population
+
 
+
type - Variable in class org.neuroml.model.Q10Settings
+
 
+
type - Variable in class org.neuroml.model.ReactionScheme
+
 
+
+

U

+
+
UnitsFormatterUtils - Class in org.neuroml.model.util
+
 
+
UnitsFormatterUtils() - Constructor for class org.neuroml.model.util.UnitsFormatterUtils
+
 
+
unmarshal(String) - Method in class org.neuroml.model.Adapter1
+
 
+
unmarshal(String) - Method in class org.neuroml.model.Adapter2
+
 
+
unmarshaller - Static variable in class org.neuroml.model.util.NeuroMLConverter
+
 
+
unstructured - Variable in class org.neuroml.model.Layout
+
 
+
UnstructuredLayout - Class in org.neuroml.model
+
+
Java class for UnstructuredLayout complex type.
+
+
UnstructuredLayout() - Constructor for class org.neuroml.model.UnstructuredLayout
+
 
+
urlToNeuroML(URL) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
+

V

+
+
v0 - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
v0 - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
v0 - Variable in class org.neuroml.model.IzhikevichCell
+
 
+
VALID_AGAINST_SCHEMA - Static variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
VALID_AGAINST_SCHEMA_AND_TESTS - Static variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
VALID_AGAINST_TESTS - Static variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
validateWithTests(File) - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
validateWithTests(NeuroMLDocument) - Method in class org.neuroml.model.util.NeuroML2Validator
+
 
+
value - Variable in class org.neuroml.model.Case
+
 
+
value - Variable in class org.neuroml.model.Constant
+
 
+
value - Variable in class org.neuroml.model.DerivedParameter
+
 
+
value - Variable in class org.neuroml.model.DerivedVariable
+
 
+
value - Variable in class org.neuroml.model.InhomogeneousValue
+
 
+
value - Variable in class org.neuroml.model.InitMembPotential
+
 
+
value - Variable in class org.neuroml.model.Property
+
 
+
value - Variable in class org.neuroml.model.Resistivity
+
 
+
value - Variable in class org.neuroml.model.SpecificCapacitance
+
 
+
value - Variable in class org.neuroml.model.SpikeThresh
+
 
+
value - Variable in class org.neuroml.model.StateAssignment
+
 
+
value - Variable in class org.neuroml.model.TimeDerivative
+
 
+
value() - Method in enum org.neuroml.model.AllowedSpaces
+
 
+
value() - Method in enum org.neuroml.model.BlockTypes
+
 
+
value() - Method in enum org.neuroml.model.ChannelTypes
+
 
+
value() - Method in enum org.neuroml.model.GateTypes
+
 
+
value() - Method in enum org.neuroml.model.Metric
+
 
+
value() - Method in enum org.neuroml.model.NetworkTypes
+
 
+
value() - Method in enum org.neuroml.model.PlasticityTypes
+
 
+
value() - Method in enum org.neuroml.model.PopulationTypes
+
 
+
value() - Method in enum org.neuroml.model.TrueOrFalse
+
 
+
valueOf(String) - Static method in enum org.neuroml.model.AllowedSpaces
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.BlockTypes
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.ChannelTypes
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.GateTypes
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.Metric
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.NetworkTypes
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.PlasticityTypes
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.PopulationTypes
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.TrueOrFalse
+
+
Returns the enum constant of this type with the specified name.
+
+
valueOf(String) - Static method in enum org.neuroml.model.util.StandardTest.LEVEL
+
+
Returns the enum constant of this type with the specified name.
+
+
values() - Static method in enum org.neuroml.model.AllowedSpaces
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.BlockTypes
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.ChannelTypes
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.GateTypes
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.Metric
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.NetworkTypes
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.PlasticityTypes
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.PopulationTypes
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.TrueOrFalse
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
values() - Static method in enum org.neuroml.model.util.StandardTest.LEVEL
+
+
Returns an array containing the constants of this enum type, in +the order they are declared.
+
+
variable - Variable in class org.neuroml.model.InhomogeneousParameter
+
 
+
variable - Variable in class org.neuroml.model.StateAssignment
+
 
+
variable - Variable in class org.neuroml.model.TimeDerivative
+
 
+
variableParameter - Variable in class org.neuroml.model.ChannelDensity
+
 
+
variableParameter - Variable in class org.neuroml.model.ChannelDensityNernst
+
 
+
variableParameter - Variable in class org.neuroml.model.ChannelDensityNonUniform
+
 
+
variableParameter - Variable in class org.neuroml.model.ChannelDensityNonUniformGHK
+
 
+
variableParameter - Variable in class org.neuroml.model.ChannelDensityNonUniformNernst
+
 
+
variableParameter - Variable in class org.neuroml.model.ChannelPopulation
+
 
+
VariableParameter - Class in org.neuroml.model
+
+
Specifies a **parameter** ( e.
+
+
VariableParameter() - Constructor for class org.neuroml.model.VariableParameter
+
 
+
vInit - Variable in class org.neuroml.model.BasePyNNCell
+
 
+
vOffset - Variable in class org.neuroml.model.HHCondExp
+
 
+
VOLTAGE_CONC_DEP_BLOCK_MECHANISM - Enum constant in enum org.neuroml.model.BlockTypes
+
 
+
voltageClamp - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
VoltageClamp - Class in org.neuroml.model
+
+
Voltage clamp.
+
+
VoltageClamp() - Constructor for class org.neuroml.model.VoltageClamp
+
 
+
voltageClampTriple - Variable in class org.neuroml.model.NeuroMLDocument
+
 
+
VoltageClampTriple - Class in org.neuroml.model
+
+
Voltage clamp with 3 clamp levels.
+
+
VoltageClampTriple() - Constructor for class org.neuroml.model.VoltageClampTriple
+
 
+
vpeak - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
vr - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
vReset - Variable in class org.neuroml.model.BasePyNNIaFCell
+
 
+
vRest - Variable in class org.neuroml.model.BasePyNNIaFCell
+
 
+
vScaling - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
vShift - Variable in class org.neuroml.model.ChannelDensityVShift
+
 
+
vShift - Variable in class org.neuroml.model.IonChannelVShift
+
 
+
vSpike - Variable in class org.neuroml.model.EIFCondExpIsfaIsta
+
 
+
vt - Variable in class org.neuroml.model.AdExIaFCell
+
 
+
vt - Variable in class org.neuroml.model.Izhikevich2007Cell
+
 
+
vth - Variable in class org.neuroml.model.GradedSynapse
+
 
+
vThresh - Variable in class org.neuroml.model.BasePyNNIaFCell
+
 
+
+

W

+
+
w0 - Variable in class org.neuroml.model.FitzHughNagumo1969Cell
+
 
+
WARN_INCLUDE_SEGMENT_GROUP_ORDER - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
WARN_ROOT_ID_0 - Variable in class org.neuroml.model.util.NeuroML2Validator
+
 
+
WARNING - Enum constant in enum org.neuroml.model.util.StandardTest.LEVEL
+
 
+
weight - Variable in class org.neuroml.model.ConnectionWD
+
 
+
weight - Variable in class org.neuroml.model.ContinuousConnectionInstanceW
+
 
+
weight - Variable in class org.neuroml.model.ElectricalConnectionInstanceW
+
 
+
weight - Variable in class org.neuroml.model.InputW
+
 
+
+

X

+
+
x - Variable in class org.neuroml.model.Location
+
 
+
x - Variable in class org.neuroml.model.Point3DWithDiam
+
 
+
x0 - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
x1 - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
xmlToMorphology(String) - Method in class org.neuroml.model.util.NeuroMLConverter
+
 
+
xSize - Variable in class org.neuroml.model.GridLayout
+
 
+
xSpacing - Variable in class org.neuroml.model.SpaceStructure
+
 
+
xStart - Variable in class org.neuroml.model.SpaceStructure
+
 
+
+

Y

+
+
y - Variable in class org.neuroml.model.Location
+
 
+
y - Variable in class org.neuroml.model.Point3DWithDiam
+
 
+
y0 - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
ySize - Variable in class org.neuroml.model.GridLayout
+
 
+
ySpacing - Variable in class org.neuroml.model.SpaceStructure
+
 
+
yStart - Variable in class org.neuroml.model.SpaceStructure
+
 
+
+

Z

+
+
z - Variable in class org.neuroml.model.Location
+
 
+
z - Variable in class org.neuroml.model.Point3DWithDiam
+
 
+
z0 - Variable in class org.neuroml.model.HindmarshRose1984Cell
+
 
+
zSize - Variable in class org.neuroml.model.GridLayout
+
 
+
zSpacing - Variable in class org.neuroml.model.SpaceStructure
+
 
+
zStart - Variable in class org.neuroml.model.SpaceStructure
+
 
+
+

_

+
+
_case - Variable in class org.neuroml.model.ConditionalDerivedVariable
+
 
+
_extends - Variable in class org.neuroml.model.ComponentType
+
 
+
+A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ 
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form
+ +
+
+ + diff --git a/index.html b/index.html new file mode 100644 index 00000000..8795c8cb --- /dev/null +++ b/index.html @@ -0,0 +1,75 @@ + + + + +Overview (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

org.neuroml.model 1.9.1 API

+
+
+
Packages
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+
+ +
+
+ + diff --git a/jquery-ui.overrides.css b/jquery-ui.overrides.css new file mode 100644 index 00000000..facf852c --- /dev/null +++ b/jquery-ui.overrides.css @@ -0,0 +1,35 @@ +/* + * Copyright (c) 2020, 2022, Oracle and/or its affiliates. All rights reserved. + * DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER. + * + * This code is free software; you can redistribute it and/or modify it + * under the terms of the GNU General Public License version 2 only, as + * published by the Free Software Foundation. Oracle designates this + * particular file as subject to the "Classpath" exception as provided + * by Oracle in the LICENSE file that accompanied this code. + * + * This code is distributed in the hope that it will be useful, but WITHOUT + * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + * FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License + * version 2 for more details (a copy is included in the LICENSE file that + * accompanied this code). + * + * You should have received a copy of the GNU General Public License version + * 2 along with this work; if not, write to the Free Software Foundation, + * Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA. + * + * Please contact Oracle, 500 Oracle Parkway, Redwood Shores, CA 94065 USA + * or visit www.oracle.com if you need additional information or have any + * questions. + */ + +.ui-state-active, +.ui-widget-content .ui-state-active, +.ui-widget-header .ui-state-active, +a.ui-button:active, +.ui-button:active, +.ui-button.ui-state-active:hover { + /* Overrides the color of selection used in jQuery UI */ + background: #F8981D; + border: 1px solid #F8981D; +} diff --git a/legal/ADDITIONAL_LICENSE_INFO b/legal/ADDITIONAL_LICENSE_INFO new file mode 100644 index 00000000..ff700cd0 --- /dev/null +++ b/legal/ADDITIONAL_LICENSE_INFO @@ -0,0 +1,37 @@ + ADDITIONAL INFORMATION ABOUT LICENSING + +Certain files distributed by Oracle America, Inc. and/or its affiliates are +subject to the following clarification and special exception to the GPLv2, +based on the GNU Project exception for its Classpath libraries, known as the +GNU Classpath Exception. + +Note that Oracle includes multiple, independent programs in this software +package. Some of those programs are provided under licenses deemed +incompatible with the GPLv2 by the Free Software Foundation and others. +For example, the package includes programs licensed under the Apache +License, Version 2.0 and may include FreeType. Such programs are licensed +to you under their original licenses. + +Oracle facilitates your further distribution of this package by adding the +Classpath Exception to the necessary parts of its GPLv2 code, which permits +you to use that code in combination with other independent modules not +licensed under the GPLv2. However, note that this would not permit you to +commingle code under an incompatible license with Oracle's GPLv2 licensed +code by, for example, cutting and pasting such code into a file also +containing Oracle's GPLv2 licensed code and then distributing the result. + +Additionally, if you were to remove the Classpath Exception from any of the +files to which it applies and distribute the result, you would likely be +required to license some or all of the other code in that distribution under +the GPLv2 as well, and since the GPLv2 is incompatible with the license terms +of some items included in the distribution by Oracle, removing the Classpath +Exception could therefore effectively compromise your ability to further +distribute the package. + +Failing to distribute notices associated with some files may also create +unexpected legal consequences. + +Proceed with caution and we recommend that you obtain the advice of a lawyer +skilled in open source matters before removing the Classpath Exception or +making modifications to this package which may subsequently be redistributed +and/or involve the use of third party software. diff --git a/legal/ASSEMBLY_EXCEPTION b/legal/ASSEMBLY_EXCEPTION new file mode 100644 index 00000000..065b8d90 --- /dev/null +++ b/legal/ASSEMBLY_EXCEPTION @@ -0,0 +1,27 @@ + +OPENJDK ASSEMBLY EXCEPTION + +The OpenJDK source code made available by Oracle America, Inc. (Oracle) at +openjdk.java.net ("OpenJDK Code") is distributed under the terms of the GNU +General Public License version 2 +only ("GPL2"), with the following clarification and special exception. + + Linking this OpenJDK Code statically or dynamically with other code + is making a combined work based on this library. Thus, the terms + and conditions of GPL2 cover the whole combination. + + As a special exception, Oracle gives you permission to link this + OpenJDK Code with certain code licensed by Oracle as indicated at + http://openjdk.java.net/legal/exception-modules-2007-05-08.html + ("Designated Exception Modules") to produce an executable, + regardless of the license terms of the Designated Exception Modules, + and to copy and distribute the resulting executable under GPL2, + provided that the Designated Exception Modules continue to be + governed by the licenses under which they were offered by Oracle. + +As such, it allows licensees and sublicensees of Oracle's GPL2 OpenJDK Code +to build an executable that includes those portions of necessary code that +Oracle could not provide under GPL2 (or that Oracle has provided under GPL2 +with the Classpath exception). If you modify or add to the OpenJDK code, +that new GPL2 code may still be combined with Designated Exception Modules +if the new code is made subject to this exception by its copyright holder. diff --git a/legal/LICENSE b/legal/LICENSE new file mode 100644 index 00000000..8b400c7a --- /dev/null +++ b/legal/LICENSE @@ -0,0 +1,347 @@ +The GNU General Public License (GPL) + +Version 2, June 1991 + +Copyright (C) 1989, 1991 Free Software Foundation, Inc. +51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA + +Everyone is permitted to copy and distribute verbatim copies of this license +document, but changing it is not allowed. + +Preamble + +The licenses for most software are designed to take away your freedom to share +and change it. By contrast, the GNU General Public License is intended to +guarantee your freedom to share and change free software--to make sure the +software is free for all its users. This General Public License applies to +most of the Free Software Foundation's software and to any other program whose +authors commit to using it. (Some other Free Software Foundation software is +covered by the GNU Library General Public License instead.) You can apply it to +your programs, too. + +When we speak of free software, we are referring to freedom, not price. Our +General Public Licenses are designed to make sure that you have the freedom to +distribute copies of free software (and charge for this service if you wish), +that you receive source code or can get it if you want it, that you can change +the software or use pieces of it in new free programs; and that you know you +can do these things. + +To protect your rights, we need to make restrictions that forbid anyone to deny +you these rights or to ask you to surrender the rights. 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For software which is copyrighted by the Free Software Foundation, +write to the Free Software Foundation; we sometimes make exceptions for this. +Our decision will be guided by the two goals of preserving the free status of +all derivatives of our free software and of promoting the sharing and reuse of +software generally. + +NO WARRANTY + +11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR +THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE +STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE +PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, +INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND +FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND +PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, +YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. + +12. 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It is safest to attach +them to the start of each source file to most effectively convey the exclusion +of warranty; and each file should have at least the "copyright" line and a +pointer to where the full notice is found. + + One line to give the program's name and a brief idea of what it does. + + Copyright (C) + + This program is free software; you can redistribute it and/or modify it + under the terms of the GNU General Public License as published by the Free + Software Foundation; either version 2 of the License, or (at your option) + any later version. + + This program is distributed in the hope that it will be useful, but WITHOUT + ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for + more details. + + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + +Also add information on how to contact you by electronic and paper mail. + +If the program is interactive, make it output a short notice like this when it +starts in an interactive mode: + + Gnomovision version 69, Copyright (C) year name of author Gnomovision comes + with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free + software, and you are welcome to redistribute it under certain conditions; + type 'show c' for details. + +The hypothetical commands 'show w' and 'show c' should show the appropriate +parts of the General Public License. Of course, the commands you use may be +called something other than 'show w' and 'show c'; they could even be +mouse-clicks or menu items--whatever suits your program. + +You should also get your employer (if you work as a programmer) or your school, +if any, to sign a "copyright disclaimer" for the program, if necessary. Here +is a sample; alter the names: + + Yoyodyne, Inc., hereby disclaims all copyright interest in the program + 'Gnomovision' (which makes passes at compilers) written by James Hacker. + + signature of Ty Coon, 1 April 1989 + + Ty Coon, President of Vice + +This General Public License does not permit incorporating your program into +proprietary programs. If your program is a subroutine library, you may +consider it more useful to permit linking proprietary applications with the +library. If this is what you want to do, use the GNU Library General Public +License instead of this License. + + +"CLASSPATH" EXCEPTION TO THE GPL + +Certain source files distributed by Oracle America and/or its affiliates are +subject to the following clarification and special exception to the GPL, but +only where Oracle has expressly included in the particular source file's header +the words "Oracle designates this particular file as subject to the "Classpath" +exception as provided by Oracle in the LICENSE file that accompanied this code." + + Linking this library statically or dynamically with other modules is making + a combined work based on this library. Thus, the terms and conditions of + the GNU General Public License cover the whole combination. + + As a special exception, the copyright holders of this library give you + permission to link this library with independent modules to produce an + executable, regardless of the license terms of these independent modules, + and to copy and distribute the resulting executable under terms of your + choice, provided that you also meet, for each linked independent module, + the terms and conditions of the license of that module. An independent + module is a module which is not derived from or based on this library. If + you modify this library, you may extend this exception to your version of + the library, but you are not obligated to do so. If you do not wish to do + so, delete this exception statement from your version. diff --git a/legal/jquery.md b/legal/jquery.md new file mode 100644 index 00000000..d468b318 --- /dev/null +++ b/legal/jquery.md @@ -0,0 +1,72 @@ +## jQuery v3.6.1 + +### jQuery License +``` +jQuery v 3.6.1 +Copyright OpenJS Foundation and other contributors, https://openjsf.org/ + +Permission is hereby granted, free of charge, to any person obtaining +a copy of this software and associated documentation files (the +"Software"), to deal in the Software without restriction, including +without limitation the rights to use, copy, modify, merge, publish, +distribute, sublicense, and/or sell copies of the Software, and to +permit persons to whom the Software is furnished to do so, subject to +the following conditions: + +The above copyright notice and this permission notice shall be +included in all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE +LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION +OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION +WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +****************************************** + +The jQuery JavaScript Library v3.6.1 also includes Sizzle.js + +Sizzle.js includes the following license: + +Copyright JS Foundation and other contributors, https://js.foundation/ + +This software consists of voluntary contributions made by many +individuals. For exact contribution history, see the revision history +available at https://github.com/jquery/sizzle + +The following license applies to all parts of this software except as +documented below: + +==== + +Permission is hereby granted, free of charge, to any person obtaining +a copy of this software and associated documentation files (the +"Software"), to deal in the Software without restriction, including +without limitation the rights to use, copy, modify, merge, publish, +distribute, sublicense, and/or sell copies of the Software, and to +permit persons to whom the Software is furnished to do so, subject to +the following conditions: + +The above copyright notice and this permission notice shall be +included in all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE +LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION +OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION +WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +==== + +All files located in the node_modules and external directories are +externally maintained libraries used by this software which have their +own licenses; we recommend you read them, as their terms may differ from +the terms above. + +********************* + +``` diff --git a/legal/jqueryUI.md b/legal/jqueryUI.md new file mode 100644 index 00000000..8031bdb5 --- /dev/null +++ b/legal/jqueryUI.md @@ -0,0 +1,49 @@ +## jQuery UI v1.12.1 + +### jQuery UI License +``` +Copyright jQuery Foundation and other contributors, https://jquery.org/ + +This software consists of voluntary contributions made by many +individuals. For exact contribution history, see the revision history +available at https://github.com/jquery/jquery-ui + +The following license applies to all parts of this software except as +documented below: + +==== + +Permission is hereby granted, free of charge, to any person obtaining +a copy of this software and associated documentation files (the +"Software"), to deal in the Software without restriction, including +without limitation the rights to use, copy, modify, merge, publish, +distribute, sublicense, and/or sell copies of the Software, and to +permit persons to whom the Software is furnished to do so, subject to +the following conditions: + +The above copyright notice and this permission notice shall be +included in all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, +EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE +LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION +OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION +WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. + +==== + +Copyright and related rights for sample code are waived via CC0. Sample +code is defined as all source code contained within the demos directory. + +CC0: http://creativecommons.org/publicdomain/zero/1.0/ + +==== + +All files located in the node_modules and external directories are +externally maintained libraries used by this software which have their +own licenses; we recommend you read them, as their terms may differ from +the terms above. + +``` diff --git a/member-search-index.js b/member-search-index.js new file mode 100644 index 00000000..3f3484e3 --- /dev/null +++ b/member-search-index.js @@ -0,0 +1 @@ +memberSearchIndex = [{"p":"org.neuroml.model","c":"ConditionalDerivedVariable","l":"_case"},{"p":"org.neuroml.model","c":"ComponentType","l":"_extends"},{"p":"org.neuroml.model","c":"AdExIaFCell","l":"a"},{"p":"org.neuroml.model","c":"EIFCondExpIsfaIsta","l":"a"},{"p":"org.neuroml.model","c":"FitzHughNagumo1969Cell","l":"a"},{"p":"org.neuroml.model","c":"HindmarshRose1984Cell","l":"a"},{"p":"org.neuroml.model","c":"Izhikevich2007Cell","l":"a"},{"p":"org.neuroml.model","c":"IzhikevichCell","l":"a"},{"p":"org.neuroml.model","c":"VoltageClampTriple","l":"active"},{"p":"org.neuroml.model","c":"Adapter1","l":"Adapter1()","u":"%3Cinit%3E()"},{"p":"org.neuroml.model","c":"Adapter2","l":"Adapter2()","u":"%3Cinit%3E()"},{"p":"org.neuroml.model.util","c":"NeuroMLConverter","l":"addElementToDocument(NeuroMLDocument, Standalone)","u":"addElementToDocument(org.neuroml.model.NeuroMLDocument,org.neuroml.model.Standalone)"},{"p":"org.neuroml.model.util.hdf5","c":"Hdf5Utils","l":"addStringAttribute(Group, String, String, H5File)","u":"addStringAttribute(ncsa.hdf.object.Group,java.lang.String,java.lang.String,ncsa.hdf.object.h5.H5File)"},{"p":"org.neuroml.model","c":"NeuroMLDocument","l":"adExIaFCell"},{"p":"org.neuroml.model","c":"AdExIaFCell","l":"AdExIaFCell()","u":"%3Cinit%3E()"},{"p":"org.neuroml.model","c":"PinskyRinzelCA3Cell","l":"alphac"},{"p":"org.neuroml.model","c":"NeuroMLDocument","l":"alphaCondSynapse"},{"p":"org.neuroml.model","c":"AlphaCondSynapse","l":"AlphaCondSynapse()","u":"%3Cinit%3E()"},{"p":"org.neuroml.model","c":"NeuroMLDocument","l":"alphaCurrentSynapse"},{"p":"org.neuroml.model","c":"AlphaCurrentSynapse","l":"AlphaCurrentSynapse()","u":"%3Cinit%3E()"},{"p":"org.neuroml.model","c":"NeuroMLDocument","l":"alphaCurrSynapse"},{"p":"org.neuroml.model","c":"AlphaCurrSynapse","l":"AlphaCurrSynapse()","u":"%3Cinit%3E()"},{"p":"org.neuroml.model","c":"NeuroMLDocument","l":"alphaSynapse"},{"p":"org.neuroml.model","c":"AlphaSynapse","l":"AlphaSynapse()","u":"%3Cinit%3E()"},{"p":"org.neuroml.model","c":"PulseGenerator","l":"amplitude"},{"p":"org.neuroml.model","c":"PulseGeneratorDL","l":"amplitude"},{"p":"org.neuroml.model","c":"SineGenerator","l":"amplitude"},{"p":"org.neuroml.model","c":"SineGeneratorDL","l":"amplitude"},{"p":"org.neuroml.model","c":"SegmentGroup","l":"annotation"},{"p":"org.neuroml.model","c":"Standalone","l":"annotation"},{"p":"org.neuroml.model","c":"Annotation","l":"Annotation()","u":"%3Cinit%3E()"},{"p":"org.neuroml.model","c":"Annotation","l":"any"},{"p":"org.neuroml.model","c":"CellSet","l":"any"},{"p":"org.neuroml.model","c":"ForwardTransition","l":"any"},{"p":"org.neuroml.model","c":"ReactionScheme","l":"any"},{"p":"org.neuroml.model","c":"Region","l":"any"},{"p":"org.neuroml.model","c":"ReverseTransition","l":"any"},{"p":"org.neuroml.model","c":"AdExIaFCell","l":"append(ObjectLocator, 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\ No newline at end of file diff --git a/module-search-index.js b/module-search-index.js new file mode 100644 index 00000000..0d59754f --- /dev/null +++ b/module-search-index.js @@ -0,0 +1 @@ +moduleSearchIndex = [];updateSearchResults(); \ No newline at end of file diff --git a/org/neuroml/model/AdExIaFCell.html b/org/neuroml/model/AdExIaFCell.html new file mode 100644 index 00000000..8c26331b --- /dev/null +++ b/org/neuroml/model/AdExIaFCell.html @@ -0,0 +1,743 @@ + + + + +AdExIaFCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class AdExIaFCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BaseCellMembPotCap +
org.neuroml.model.AdExIaFCell
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class AdExIaFCell +extends BaseCellMembPotCap +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity. J Neurophysiol 94:3637-3642 + \n + :param gL: Leak conductance + :type gL: conductance + :param EL: Leak reversal potential + :type EL: voltage + :param VT: Spike threshold + :type VT: voltage + :param thresh: Spike detection threshold + :type thresh: voltage + :param reset: Reset potential + :type reset: voltage + :param delT: Slope factor + :type delT: voltage + :param tauw: Adaptation time constant + :type tauw: time + :param refract: Refractory period + :type refract: time + :param a: Sub-threshold adaptation variable + :type a: conductance + :param b: Spike-triggered adaptation variable + :type b: current + :param C: Total capacitance of the cell membrane + :type C: capacitance + + + +

Java class for AdExIaFCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="AdExIaFCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCellMembPotCap">
+       <attribute name="gL" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+       <attribute name="EL" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="reset" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="VT" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="thresh" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="delT" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="tauw" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="refract" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="a" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+       <attribute name="b" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_current" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      gl

      +
      protected String gl
      +
      +
      • +
    • +
      +

      el

      +
      protected String el
      +
      +
      • +
    • +
      +

      reset

      +
      protected String reset
      +
      +
      • +
    • +
      +

      vt

      +
      protected String vt
      +
      +
      • +
    • +
      +

      thresh

      +
      protected String thresh
      +
      +
      • +
    • +
      +

      delT

      +
      protected String delT
      +
      +
      • +
    • +
      +

      tauw

      +
      protected String tauw
      +
      +
      • +
    • +
      +

      refract

      +
      protected String refract
      +
      +
      • +
    • +
      +

      a

      +
      protected String a
      +
      +
      • +
    • +
      +

      b

      +
      protected String b
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      AdExIaFCell

      +
      public AdExIaFCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getGL

      +
      public String getGL()
      +
      Gets the value of the gl property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGL

      +
      public void setGL(String value)
      +
      Sets the value of the gl property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getEL

      +
      public String getEL()
      +
      Gets the value of the el property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setEL

      +
      public void setEL(String value)
      +
      Sets the value of the el property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getReset

      +
      public String getReset()
      +
      Gets the value of the reset property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setReset

      +
      public void setReset(String value)
      +
      Sets the value of the reset property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getVT

      +
      public String getVT()
      +
      Gets the value of the vt property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVT

      +
      public void setVT(String value)
      +
      Sets the value of the vt property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getThresh

      +
      public String getThresh()
      +
      Gets the value of the thresh property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setThresh

      +
      public void setThresh(String value)
      +
      Sets the value of the thresh property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDelT

      +
      public String getDelT()
      +
      Gets the value of the delT property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelT

      +
      public void setDelT(String value)
      +
      Sets the value of the delT property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTauw

      +
      public String getTauw()
      +
      Gets the value of the tauw property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauw

      +
      public void setTauw(String value)
      +
      Sets the value of the tauw property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getRefract

      +
      public String getRefract()
      +
      Gets the value of the refract property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRefract

      +
      public void setRefract(String value)
      +
      Sets the value of the refract property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getA

      +
      public String getA()
      +
      Gets the value of the a property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setA

      +
      public void setA(String value)
      +
      Sets the value of the a property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getB

      +
      public String getB()
      +
      Gets the value of the b property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setB

      +
      public void setB(String value)
      +
      Sets the value of the b property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCellMembPotCap
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCellMembPotCap
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCellMembPotCap
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Adapter1.html b/org/neuroml/model/Adapter1.html new file mode 100644 index 00000000..df082036 --- /dev/null +++ b/org/neuroml/model/Adapter1.html @@ -0,0 +1,182 @@ + + + + +Adapter1 (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Adapter1

+
+
java.lang.Object +
javax.xml.bind.annotation.adapters.XmlAdapter<String,Integer> +
org.neuroml.model.Adapter1
+
+
+
+
+
public class Adapter1 +extends XmlAdapter<String,Integer>
+
+
+ +
+
+ +
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Adapter2.html b/org/neuroml/model/Adapter2.html new file mode 100644 index 00000000..101a0444 --- /dev/null +++ b/org/neuroml/model/Adapter2.html @@ -0,0 +1,182 @@ + + + + +Adapter2 (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Adapter2

+
+
java.lang.Object +
javax.xml.bind.annotation.adapters.XmlAdapter<String,Integer> +
org.neuroml.model.Adapter2
+
+
+
+
+
public class Adapter2 +extends XmlAdapter<String,Integer>
+
+
+ +
+
+ +
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/AllowedSpaces.html b/org/neuroml/model/AllowedSpaces.html new file mode 100644 index 00000000..9f3fe516 --- /dev/null +++ b/org/neuroml/model/AllowedSpaces.html @@ -0,0 +1,288 @@ + + + + +AllowedSpaces (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum AllowedSpaces

+
+
java.lang.Object +
java.lang.Enum<AllowedSpaces> +
org.neuroml.model.AllowedSpaces
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<AllowedSpaces>, java.lang.constant.Constable
+
+
+
public enum AllowedSpaces +extends Enum<AllowedSpaces>
+

Java class for allowedSpaces. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="allowedSpaces">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="Euclidean_1D"/>
+     <enumeration value="Euclidean_2D"/>
+     <enumeration value="Euclidean_3D"/>
+     <enumeration value="Grid_1D"/>
+     <enumeration value="Grid_2D"/>
+     <enumeration value="Grid_3D"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      EUCLIDEAN_1_D

      +
      public static final AllowedSpaces EUCLIDEAN_1_D
      +
      +
      • +
    • +
      +

      EUCLIDEAN_2_D

      +
      public static final AllowedSpaces EUCLIDEAN_2_D
      +
      +
      • +
    • +
      +

      EUCLIDEAN_3_D

      +
      public static final AllowedSpaces EUCLIDEAN_3_D
      +
      +
      • +
    • +
      +

      GRID_1_D

      +
      public static final AllowedSpaces GRID_1_D
      +
      +
      • +
    • +
      +

      GRID_2_D

      +
      public static final AllowedSpaces GRID_2_D
      +
      +
      • +
    • +
      +

      GRID_3_D

      +
      public static final AllowedSpaces GRID_3_D
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static AllowedSpaces[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static AllowedSpaces valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static AllowedSpaces fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/AlphaCondSynapse.html b/org/neuroml/model/AlphaCondSynapse.html new file mode 100644 index 00000000..a415df47 --- /dev/null +++ b/org/neuroml/model/AlphaCondSynapse.html @@ -0,0 +1,319 @@ + + + + +AlphaCondSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class AlphaCondSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BasePynnSynapse +
org.neuroml.model.AlphaCondSynapse
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class AlphaCondSynapse +extends BasePynnSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Alpha synapse: rise time and decay time are both tau_syn. Conductance based synapse. + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none + + + +

Java class for AlphaCondSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="AlphaCondSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BasePynnSynapse">
+       <attribute name="e_rev" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      eRev

      +
      protected float eRev
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      AlphaCondSynapse

      +
      public AlphaCondSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getERev

      +
      public float getERev()
      +
      Gets the value of the eRev property.
      +
      +
      • +
    • +
      +

      setERev

      +
      public void setERev(float value)
      +
      Sets the value of the eRev property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePynnSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePynnSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePynnSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/AlphaCurrSynapse.html b/org/neuroml/model/AlphaCurrSynapse.html new file mode 100644 index 00000000..5af59a5e --- /dev/null +++ b/org/neuroml/model/AlphaCurrSynapse.html @@ -0,0 +1,269 @@ + + + + +AlphaCurrSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class AlphaCurrSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BasePynnSynapse +
org.neuroml.model.AlphaCurrSynapse
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class AlphaCurrSynapse +extends BasePynnSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Alpha synapse: rise time and decay time are both tau_syn. Current based synapse. + \n + :param tau_syn: + :type tau_syn: none + + + +

Java class for AlphaCurrSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="AlphaCurrSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BasePynnSynapse">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      AlphaCurrSynapse

      +
      public AlphaCurrSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePynnSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePynnSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePynnSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/AlphaCurrentSynapse.html b/org/neuroml/model/AlphaCurrentSynapse.html new file mode 100644 index 00000000..a6e7155c --- /dev/null +++ b/org/neuroml/model/AlphaCurrentSynapse.html @@ -0,0 +1,367 @@ + + + + +AlphaCurrentSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class AlphaCurrentSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseCurrentBasedSynapse +
org.neuroml.model.AlphaCurrentSynapse
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class AlphaCurrentSynapse +extends BaseCurrentBasedSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current + + + +

Java class for AlphaCurrentSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="AlphaCurrentSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCurrentBasedSynapse">
+       <attribute name="tau" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="ibase" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_current" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      tau

      +
      protected String tau
      +
      +
      • +
    • +
      +

      ibase

      +
      protected String ibase
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      AlphaCurrentSynapse

      +
      public AlphaCurrentSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTau

      +
      public String getTau()
      +
      Gets the value of the tau property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTau

      +
      public void setTau(String value)
      +
      Sets the value of the tau property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIbase

      +
      public String getIbase()
      +
      Gets the value of the ibase property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIbase

      +
      public void setIbase(String value)
      +
      Sets the value of the ibase property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCurrentBasedSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCurrentBasedSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCurrentBasedSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/AlphaSynapse.html b/org/neuroml/model/AlphaSynapse.html new file mode 100644 index 00000000..59614318 --- /dev/null +++ b/org/neuroml/model/AlphaSynapse.html @@ -0,0 +1,333 @@ + + + + +AlphaSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class AlphaSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse +
org.neuroml.model.BaseConductanceBasedSynapse +
org.neuroml.model.AlphaSynapse
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class AlphaSynapse +extends BaseConductanceBasedSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage + + + +

Java class for AlphaSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="AlphaSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConductanceBasedSynapse">
+       <attribute name="tau" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      tau

      +
      protected String tau
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      AlphaSynapse

      +
      public AlphaSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTau

      +
      public String getTau()
      +
      Gets the value of the tau property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTau

      +
      public void setTau(String value)
      +
      Sets the value of the tau property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Annotation.html b/org/neuroml/model/Annotation.html new file mode 100644 index 00000000..7203fc31 --- /dev/null +++ b/org/neuroml/model/Annotation.html @@ -0,0 +1,288 @@ + + + + +Annotation (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Annotation

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Annotation
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Annotation +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A structured annotation containing metadata, specifically RDF or **property** elements + + +

Java class for Annotation complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Annotation">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <sequence>
+         <any processContents='skip' maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Annotation

      +
      public Annotation()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAny

      +
      public List<Element> getAny()
      +
      Gets the value of the any property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the any property. + +

      + For example, to add a new item, do as follows: + 

      +    getAny().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Element

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Base.html b/org/neuroml/model/Base.html new file mode 100644 index 00000000..e5aa4eb9 --- /dev/null +++ b/org/neuroml/model/Base.html @@ -0,0 +1,294 @@ + + + + +Base (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Base

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BaseProjection, CellSet, ChannelDensity, ChannelDensityGHK, ChannelDensityGHK2, ChannelDensityNernst, ChannelDensityNonUniform, ChannelDensityNonUniformGHK, ChannelDensityNonUniformNernst, ChannelPopulation, ClosedState, ExtracellularProperties, ExtracellularPropertiesLocal, ForwardTransition, GateFractional, GateFractionalSubgate, GateHHInstantaneous, GateHHRates, GateHHRatesInf, GateHHRatesTau, GateHHRatesTauInf, GateHHTauInf, GateHHUndetermined, GateKS, InhomogeneousParameter, InputList, OpenState, ReactionScheme, Region, ReverseTransition, SegmentGroup, Space, Species, Standalone, TauInfTransition
+
+
+
public class Base +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Anything which can have a unique (within its parent) id of the form NmlId (spaceless combination of letters, numbers and underscore). + +

Java class for Base complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Base">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="id" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+
    + +
  • +
    +

    Field Summary

    +
    Fields
    +
    +
    Modifier and Type
    +
    Field
    +
    Description
    +
    protected String
    +
    id
    +
     
    +
    +
    +
    • + +
  • +
    +

    Constructor Summary

    +
    Constructors
    +
    +
    Constructor
    +
    Description
    +
    Base()
    +
     
    +
    +
    +
    • + +
  • +
    +

    Method Summary

    +
    +
    +
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    StringBuilder
    +
    append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
    +
     
    +
    StringBuilder
    +
    appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
    +
     
    +
    String
    +
    getId()
    +
    +
    Gets the value of the id property.
    +
    +
    void
    +
    setId(String value)
    +
    +
    Sets the value of the id property.
    +
    +
    String
    +
    toString()
    +
     
    +
    +
    +
    +
    +

    Methods inherited from class java.lang.Object

    +clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
    +
    +
    • +
+
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      id

      +
      protected String id
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Base

      +
      public Base()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getId

      +
      public String getId()
      +
      Gets the value of the id property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setId

      +
      public void setId(String value)
      +
      Sets the value of the id property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseCell.html b/org/neuroml/model/BaseCell.html new file mode 100644 index 00000000..2065f858 --- /dev/null +++ b/org/neuroml/model/BaseCell.html @@ -0,0 +1,311 @@ + + + + +BaseCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BaseCellMembPotCap, BasePyNNCell, Cell, FitzHughNagumo1969Cell, FitzHughNagumoCell, IafCell, IafTauCell, IzhikevichCell, PinskyRinzelCA3Cell
+
+
+
public class BaseCell +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base type of any cell ( e. g. point neuron like **izhikevich2007Cell** , or a morphologically detailed **Cell** with **segment** s ) which can be used in a **population** + + +

Java class for BaseCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      neuroLexId

      +
      protected String neuroLexId
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseCell

      +
      public BaseCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseCellMembPotCap.html b/org/neuroml/model/BaseCellMembPotCap.html new file mode 100644 index 00000000..5833d03a --- /dev/null +++ b/org/neuroml/model/BaseCellMembPotCap.html @@ -0,0 +1,323 @@ + + + + +BaseCellMembPotCap (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseCellMembPotCap

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BaseCellMembPotCap
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
AdExIaFCell, HindmarshRose1984Cell, Izhikevich2007Cell
+
+
+
public class BaseCellMembPotCap +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance + + + +

Java class for BaseCellMembPotCap complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseCellMembPotCap">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <attribute name="C" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_capacitance" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      cap

      +
      protected String cap
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseCellMembPotCap

      +
      public BaseCellMembPotCap()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getCap

      +
      public String getCap()
      +
      Gets the value of the cap property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setCap

      +
      public void setCap(String value)
      +
      Sets the value of the cap property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseConductanceBasedSynapse.html b/org/neuroml/model/BaseConductanceBasedSynapse.html new file mode 100644 index 00000000..59f089f9 --- /dev/null +++ b/org/neuroml/model/BaseConductanceBasedSynapse.html @@ -0,0 +1,371 @@ + + + + +BaseConductanceBasedSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseConductanceBasedSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse +
org.neuroml.model.BaseConductanceBasedSynapse
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
AlphaSynapse, ExpOneSynapse, ExpTwoSynapse
+
+
+
public class BaseConductanceBasedSynapse +extends BaseVoltageDepSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Synapse model which exposes a conductance **g** in addition to producing a current. Not necessarily ohmic!! cno_0000027 + \n + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage + + + +

Java class for BaseConductanceBasedSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseConductanceBasedSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseVoltageDepSynapse">
+       <attribute name="gbase" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+       <attribute name="erev" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      gbase

      +
      protected String gbase
      +
      +
      • +
    • +
      +

      erev

      +
      protected String erev
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseConductanceBasedSynapse

      +
      public BaseConductanceBasedSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getGbase

      +
      public String getGbase()
      +
      Gets the value of the gbase property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGbase

      +
      public void setGbase(String value)
      +
      Sets the value of the gbase property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getErev

      +
      public String getErev()
      +
      Gets the value of the erev property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setErev

      +
      public void setErev(String value)
      +
      Sets the value of the erev property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseConductanceBasedSynapseTwo.html b/org/neuroml/model/BaseConductanceBasedSynapseTwo.html new file mode 100644 index 00000000..17350d26 --- /dev/null +++ b/org/neuroml/model/BaseConductanceBasedSynapseTwo.html @@ -0,0 +1,417 @@ + + + + +BaseConductanceBasedSynapseTwo (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseConductanceBasedSynapseTwo

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse +
org.neuroml.model.BaseConductanceBasedSynapseTwo
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ExpThreeSynapse
+
+
+
public class BaseConductanceBasedSynapseTwo +extends BaseVoltageDepSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current. Not necessarily ohmic!! cno_0000027 + \n + :param gbase1: Baseline conductance 1 + :type gbase1: conductance + :param gbase2: Baseline conductance 2 + :type gbase2: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage + + + +

Java class for BaseConductanceBasedSynapseTwo complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseConductanceBasedSynapseTwo">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseVoltageDepSynapse">
+       <attribute name="gbase1" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+       <attribute name="gbase2" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+       <attribute name="erev" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      gbase1

      +
      protected String gbase1
      +
      +
      • +
    • +
      +

      gbase2

      +
      protected String gbase2
      +
      +
      • +
    • +
      +

      erev

      +
      protected String erev
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseConductanceBasedSynapseTwo

      +
      public BaseConductanceBasedSynapseTwo()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getGbase1

      +
      public String getGbase1()
      +
      Gets the value of the gbase1 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGbase1

      +
      public void setGbase1(String value)
      +
      Sets the value of the gbase1 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGbase2

      +
      public String getGbase2()
      +
      Gets the value of the gbase2 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGbase2

      +
      public void setGbase2(String value)
      +
      Sets the value of the gbase2 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getErev

      +
      public String getErev()
      +
      Gets the value of the erev property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setErev

      +
      public void setErev(String value)
      +
      Sets the value of the erev property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseConnection.html b/org/neuroml/model/BaseConnection.html new file mode 100644 index 00000000..23208d6b --- /dev/null +++ b/org/neuroml/model/BaseConnection.html @@ -0,0 +1,302 @@ + + + + +BaseConnection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseConnection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BaseConnectionNewFormat, BaseConnectionOldFormat
+
+
+
public class BaseConnection +extends BaseNonNegativeIntegerId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections + +

Java class for BaseConnection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseConnection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseNonNegativeIntegerId">
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      neuroLexId

      +
      protected String neuroLexId
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseConnection

      +
      public BaseConnection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseConnectionNewFormat.html b/org/neuroml/model/BaseConnectionNewFormat.html new file mode 100644 index 00000000..716eb21c --- /dev/null +++ b/org/neuroml/model/BaseConnectionNewFormat.html @@ -0,0 +1,531 @@ + + + + +BaseConnectionNewFormat (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseConnectionNewFormat

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionNewFormat
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ContinuousConnection, ElectricalConnection
+
+
+
public class BaseConnectionNewFormat +extends BaseConnection +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base of all synaptic connections with preCell, postSegment, etc. + See BaseConnectionOldFormat + +

Java class for BaseConnectionNewFormat complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseConnectionNewFormat">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConnection">
+       <attribute name="preCell" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="preSegment" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" default="0" />
+       <attribute name="preFractionAlong" type="{http://www.neuroml.org/schema/neuroml2}ZeroToOne" default="0.5" />
+       <attribute name="postCell" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="postSegment" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" default="0" />
+       <attribute name="postFractionAlong" type="{http://www.neuroml.org/schema/neuroml2}ZeroToOne" default="0.5" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      preCell

      +
      protected String preCell
      +
      +
      • +
    • +
      +

      preSegment

      +
      protected Integer preSegment
      +
      +
      • +
    • +
      +

      preFractionAlong

      +
      protected Float preFractionAlong
      +
      +
      • +
    • +
      +

      postCell

      +
      protected String postCell
      +
      +
      • +
    • +
      +

      postSegment

      +
      protected Integer postSegment
      +
      +
      • +
    • +
      +

      postFractionAlong

      +
      protected Float postFractionAlong
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseConnectionNewFormat

      +
      public BaseConnectionNewFormat()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPreCell

      +
      public String getPreCell()
      +
      Gets the value of the preCell property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPreCell

      +
      public void setPreCell(String value)
      +
      Sets the value of the preCell property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPreSegment

      +
      public int getPreSegment()
      +
      Gets the value of the preSegment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPreSegment

      +
      public void setPreSegment(Integer value)
      +
      Sets the value of the preSegment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPreFractionAlong

      +
      public float getPreFractionAlong()
      +
      Gets the value of the preFractionAlong property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setPreFractionAlong

      +
      public void setPreFractionAlong(Float value)
      +
      Sets the value of the preFractionAlong property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      getPostCell

      +
      public String getPostCell()
      +
      Gets the value of the postCell property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPostCell

      +
      public void setPostCell(String value)
      +
      Sets the value of the postCell property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPostSegment

      +
      public int getPostSegment()
      +
      Gets the value of the postSegment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPostSegment

      +
      public void setPostSegment(Integer value)
      +
      Sets the value of the postSegment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPostFractionAlong

      +
      public float getPostFractionAlong()
      +
      Gets the value of the postFractionAlong property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setPostFractionAlong

      +
      public void setPostFractionAlong(Float value)
      +
      Sets the value of the postFractionAlong property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConnection
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConnection
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConnection
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseConnectionOldFormat.html b/org/neuroml/model/BaseConnectionOldFormat.html new file mode 100644 index 00000000..dc34c483 --- /dev/null +++ b/org/neuroml/model/BaseConnectionOldFormat.html @@ -0,0 +1,531 @@ + + + + +BaseConnectionOldFormat (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseConnectionOldFormat

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionOldFormat
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
Connection, ConnectionWD
+
+
+
public class BaseConnectionOldFormat +extends BaseConnection +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base of all synaptic connections with preCellId, postSegmentId, etc. + Note: this is not the best name for these attributes, since Id is superfluous, hence BaseConnectionNewFormat + +

Java class for BaseConnectionOldFormat complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseConnectionOldFormat">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConnection">
+       <attribute name="preCellId" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2PopulationReferencePath" />
+       <attribute name="preSegmentId" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" default="0" />
+       <attribute name="preFractionAlong" type="{http://www.neuroml.org/schema/neuroml2}ZeroToOne" default="0.5" />
+       <attribute name="postCellId" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2PopulationReferencePath" />
+       <attribute name="postSegmentId" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" default="0" />
+       <attribute name="postFractionAlong" type="{http://www.neuroml.org/schema/neuroml2}ZeroToOne" default="0.5" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      preCellId

      +
      protected String preCellId
      +
      +
      • +
    • +
      +

      preSegmentId

      +
      protected Integer preSegmentId
      +
      +
      • +
    • +
      +

      preFractionAlong

      +
      protected Float preFractionAlong
      +
      +
      • +
    • +
      +

      postCellId

      +
      protected String postCellId
      +
      +
      • +
    • +
      +

      postSegmentId

      +
      protected Integer postSegmentId
      +
      +
      • +
    • +
      +

      postFractionAlong

      +
      protected Float postFractionAlong
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseConnectionOldFormat

      +
      public BaseConnectionOldFormat()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPreCellId

      +
      public String getPreCellId()
      +
      Gets the value of the preCellId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPreCellId

      +
      public void setPreCellId(String value)
      +
      Sets the value of the preCellId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPreSegmentId

      +
      public int getPreSegmentId()
      +
      Gets the value of the preSegmentId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPreSegmentId

      +
      public void setPreSegmentId(Integer value)
      +
      Sets the value of the preSegmentId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPreFractionAlong

      +
      public float getPreFractionAlong()
      +
      Gets the value of the preFractionAlong property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setPreFractionAlong

      +
      public void setPreFractionAlong(Float value)
      +
      Sets the value of the preFractionAlong property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      getPostCellId

      +
      public String getPostCellId()
      +
      Gets the value of the postCellId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPostCellId

      +
      public void setPostCellId(String value)
      +
      Sets the value of the postCellId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPostSegmentId

      +
      public int getPostSegmentId()
      +
      Gets the value of the postSegmentId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPostSegmentId

      +
      public void setPostSegmentId(Integer value)
      +
      Sets the value of the postSegmentId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPostFractionAlong

      +
      public float getPostFractionAlong()
      +
      Gets the value of the postFractionAlong property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setPostFractionAlong

      +
      public void setPostFractionAlong(Float value)
      +
      Sets the value of the postFractionAlong property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConnection
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConnection
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConnection
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseCurrentBasedSynapse.html b/org/neuroml/model/BaseCurrentBasedSynapse.html new file mode 100644 index 00000000..c7183728 --- /dev/null +++ b/org/neuroml/model/BaseCurrentBasedSynapse.html @@ -0,0 +1,261 @@ + + + + +BaseCurrentBasedSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseCurrentBasedSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseCurrentBasedSynapse
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
AlphaCurrentSynapse
+
+
+
public class BaseCurrentBasedSynapse +extends BaseSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Synapse model which produces a synaptic current. + + +

Java class for BaseCurrentBasedSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseCurrentBasedSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseSynapse">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseCurrentBasedSynapse

      +
      public BaseCurrentBasedSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseNonNegativeIntegerId.html b/org/neuroml/model/BaseNonNegativeIntegerId.html new file mode 100644 index 00000000..94b98d44 --- /dev/null +++ b/org/neuroml/model/BaseNonNegativeIntegerId.html @@ -0,0 +1,294 @@ + + + + +BaseNonNegativeIntegerId (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseNonNegativeIntegerId

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BaseConnection, Input, Segment, Spike
+
+
+
public class BaseNonNegativeIntegerId +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Anything which can have a unique (within its parent) id, which must be an integer zero or greater. + +

Java class for BaseNonNegativeIntegerId complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseNonNegativeIntegerId">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="id" use="required" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      id

      +
      protected Integer id
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseNonNegativeIntegerId

      +
      public BaseNonNegativeIntegerId()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getId

      +
      public Integer getId()
      +
      Gets the value of the id property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setId

      +
      public void setId(Integer value)
      +
      Sets the value of the id property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseProjection.html b/org/neuroml/model/BaseProjection.html new file mode 100644 index 00000000..3d44f223 --- /dev/null +++ b/org/neuroml/model/BaseProjection.html @@ -0,0 +1,346 @@ + + + + +BaseProjection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseProjection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.BaseProjection
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ContinuousProjection, ElectricalProjection, Projection
+
+
+
public class BaseProjection +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base for projection (set of synaptic connections) between two populations + +

Java class for BaseProjection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseProjection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <attribute name="presynapticPopulation" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="postsynapticPopulation" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      presynapticPopulation

      +
      protected String presynapticPopulation
      +
      +
      • +
    • +
      +

      postsynapticPopulation

      +
      protected String postsynapticPopulation
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseProjection

      +
      public BaseProjection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPresynapticPopulation

      +
      public String getPresynapticPopulation()
      +
      Gets the value of the presynapticPopulation property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPresynapticPopulation

      +
      public void setPresynapticPopulation(String value)
      +
      Sets the value of the presynapticPopulation property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPostsynapticPopulation

      +
      public String getPostsynapticPopulation()
      +
      Gets the value of the postsynapticPopulation property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPostsynapticPopulation

      +
      public void setPostsynapticPopulation(String value)
      +
      Sets the value of the postsynapticPopulation property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BasePyNNCell.html b/org/neuroml/model/BasePyNNCell.html new file mode 100644 index 00000000..11addf84 --- /dev/null +++ b/org/neuroml/model/BasePyNNCell.html @@ -0,0 +1,457 @@ + + + + +BasePyNNCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BasePyNNCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BasePyNNIaFCell, HHCondExp
+
+
+
public class BasePyNNCell +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base type of any PyNN standard cell model. Note: membrane potential **v** has dimensions voltage, but all other parameters are dimensionless. This is to facilitate translation to and from PyNN scripts in Python, where these parameters have implicit units, see http://neuralensemble.org/trac/PyNN/wiki/StandardModels + \n + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for basePyNNCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="basePyNNCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <attribute name="cm" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="i_offset" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="tau_syn_E" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="tau_syn_I" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="v_init" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      cm

      +
      protected float cm
      +
      +
      • +
    • +
      +

      iOffset

      +
      protected float iOffset
      +
      +
      • +
    • +
      +

      tauSynE

      +
      protected float tauSynE
      +
      +
      • +
    • +
      +

      tauSynI

      +
      protected float tauSynI
      +
      +
      • +
    • +
      +

      vInit

      +
      protected float vInit
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BasePyNNCell

      +
      public BasePyNNCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getCm

      +
      public float getCm()
      +
      Gets the value of the cm property.
      +
      +
      • +
    • +
      +

      setCm

      +
      public void setCm(float value)
      +
      Sets the value of the cm property.
      +
      +
      • +
    • +
      +

      getIOffset

      +
      public float getIOffset()
      +
      Gets the value of the iOffset property.
      +
      +
      • +
    • +
      +

      setIOffset

      +
      public void setIOffset(float value)
      +
      Sets the value of the iOffset property.
      +
      +
      • +
    • +
      +

      getTauSynE

      +
      public float getTauSynE()
      +
      Gets the value of the tauSynE property.
      +
      +
      • +
    • +
      +

      setTauSynE

      +
      public void setTauSynE(float value)
      +
      Sets the value of the tauSynE property.
      +
      +
      • +
    • +
      +

      getTauSynI

      +
      public float getTauSynI()
      +
      Gets the value of the tauSynI property.
      +
      +
      • +
    • +
      +

      setTauSynI

      +
      public void setTauSynI(float value)
      +
      Sets the value of the tauSynI property.
      +
      +
      • +
    • +
      +

      getVInit

      +
      public float getVInit()
      +
      Gets the value of the vInit property.
      +
      +
      • +
    • +
      +

      setVInit

      +
      public void setVInit(float value)
      +
      Sets the value of the vInit property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BasePyNNIaFCell.html b/org/neuroml/model/BasePyNNIaFCell.html new file mode 100644 index 00000000..d55130ae --- /dev/null +++ b/org/neuroml/model/BasePyNNIaFCell.html @@ -0,0 +1,475 @@ + + + + +BasePyNNIaFCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BasePyNNIaFCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.BasePyNNIaFCell
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BasePyNNIaFCondCell, IFCurrAlpha, IFCurrExp
+
+
+
public class BasePyNNIaFCell +extends BasePyNNCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for basePyNNIaFCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="basePyNNIaFCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}basePyNNCell">
+       <attribute name="tau_m" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="tau_refrac" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="v_reset" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="v_rest" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="v_thresh" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      tauM

      +
      protected float tauM
      +
      +
      • +
    • +
      +

      tauRefrac

      +
      protected float tauRefrac
      +
      +
      • +
    • +
      +

      vReset

      +
      protected float vReset
      +
      +
      • +
    • +
      +

      vRest

      +
      protected float vRest
      +
      +
      • +
    • +
      +

      vThresh

      +
      protected float vThresh
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BasePyNNIaFCell

      +
      public BasePyNNIaFCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTauM

      +
      public float getTauM()
      +
      Gets the value of the tauM property.
      +
      +
      • +
    • +
      +

      setTauM

      +
      public void setTauM(float value)
      +
      Sets the value of the tauM property.
      +
      +
      • +
    • +
      +

      getTauRefrac

      +
      public float getTauRefrac()
      +
      Gets the value of the tauRefrac property.
      +
      +
      • +
    • +
      +

      setTauRefrac

      +
      public void setTauRefrac(float value)
      +
      Sets the value of the tauRefrac property.
      +
      +
      • +
    • +
      +

      getVReset

      +
      public float getVReset()
      +
      Gets the value of the vReset property.
      +
      +
      • +
    • +
      +

      setVReset

      +
      public void setVReset(float value)
      +
      Sets the value of the vReset property.
      +
      +
      • +
    • +
      +

      getVRest

      +
      public float getVRest()
      +
      Gets the value of the vRest property.
      +
      +
      • +
    • +
      +

      setVRest

      +
      public void setVRest(float value)
      +
      Sets the value of the vRest property.
      +
      +
      • +
    • +
      +

      getVThresh

      +
      public float getVThresh()
      +
      Gets the value of the vThresh property.
      +
      +
      • +
    • +
      +

      setVThresh

      +
      public void setVThresh(float value)
      +
      Sets the value of the vThresh property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePyNNCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePyNNCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePyNNCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BasePyNNIaFCondCell.html b/org/neuroml/model/BasePyNNIaFCondCell.html new file mode 100644 index 00000000..a3e16068 --- /dev/null +++ b/org/neuroml/model/BasePyNNIaFCondCell.html @@ -0,0 +1,385 @@ + + + + +BasePyNNIaFCondCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BasePyNNIaFCondCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.BasePyNNIaFCell +
org.neuroml.model.BasePyNNIaFCondCell
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
EIFCondExpIsfaIsta, IFCondAlpha, IFCondExp
+
+
+
public class BasePyNNIaFCondCell +extends BasePyNNIaFCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for basePyNNIaFCondCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="basePyNNIaFCondCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}basePyNNIaFCell">
+       <attribute name="e_rev_E" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="e_rev_I" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      eRevE

      +
      protected float eRevE
      +
      +
      • +
    • +
      +

      eRevI

      +
      protected float eRevI
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BasePyNNIaFCondCell

      +
      public BasePyNNIaFCondCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getERevE

      +
      public float getERevE()
      +
      Gets the value of the eRevE property.
      +
      +
      • +
    • +
      +

      setERevE

      +
      public void setERevE(float value)
      +
      Sets the value of the eRevE property.
      +
      +
      • +
    • +
      +

      getERevI

      +
      public float getERevI()
      +
      Gets the value of the eRevI property.
      +
      +
      • +
    • +
      +

      setERevI

      +
      public void setERevI(float value)
      +
      Sets the value of the eRevI property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePyNNIaFCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePyNNIaFCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePyNNIaFCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BasePynnSynapse.html b/org/neuroml/model/BasePynnSynapse.html new file mode 100644 index 00000000..e0d0a57d --- /dev/null +++ b/org/neuroml/model/BasePynnSynapse.html @@ -0,0 +1,313 @@ + + + + +BasePynnSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BasePynnSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BasePynnSynapse
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
AlphaCondSynapse, AlphaCurrSynapse, ExpCondSynapse, ExpCurrSynapse
+
+
+
public class BasePynnSynapse +extends BaseSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base type for all PyNN synapses. Note, the current **I** produced is dimensionless, but it requires a membrane potential **v** with dimension voltage + \n + :param tau_syn: + :type tau_syn: none + + + +

Java class for BasePynnSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BasePynnSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseSynapse">
+       <attribute name="tau_syn" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      tauSyn

      +
      protected float tauSyn
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BasePynnSynapse

      +
      public BasePynnSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTauSyn

      +
      public float getTauSyn()
      +
      Gets the value of the tauSyn property.
      +
      +
      • +
    • +
      +

      setTauSyn

      +
      public void setTauSyn(float value)
      +
      Sets the value of the tauSyn property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseSynapse.html b/org/neuroml/model/BaseSynapse.html new file mode 100644 index 00000000..42be1e97 --- /dev/null +++ b/org/neuroml/model/BaseSynapse.html @@ -0,0 +1,311 @@ + + + + +BaseSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BaseCurrentBasedSynapse, BasePynnSynapse, BaseVoltageDepSynapse, GapJunction, GradedSynapse, LinearGradedSynapse, SilentSynapse
+
+
+
public class BaseSynapse +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base type for all synapses, i. e. ComponentTypes which produce a current ( dimension current ) and change Dynamics in response to an incoming event. cno_0000009 + + +

Java class for BaseSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      neuroLexId

      +
      protected String neuroLexId
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseSynapse

      +
      public BaseSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseVoltageDepSynapse.html b/org/neuroml/model/BaseVoltageDepSynapse.html new file mode 100644 index 00000000..ddbc62b0 --- /dev/null +++ b/org/neuroml/model/BaseVoltageDepSynapse.html @@ -0,0 +1,261 @@ + + + + +BaseVoltageDepSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseVoltageDepSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BaseConductanceBasedSynapse, BaseConductanceBasedSynapseTwo, DoubleSynapse
+
+
+
public class BaseVoltageDepSynapse +extends BaseSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base type for synapses with a dependence on membrane potential + + +

Java class for BaseVoltageDepSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseVoltageDepSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseSynapse">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseVoltageDepSynapse

      +
      public BaseVoltageDepSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BaseWithoutId.html b/org/neuroml/model/BaseWithoutId.html new file mode 100644 index 00000000..1b074245 --- /dev/null +++ b/org/neuroml/model/BaseWithoutId.html @@ -0,0 +1,224 @@ + + + + +BaseWithoutId (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BaseWithoutId

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
Annotation, Base, BaseNonNegativeIntegerId, BlockMechanism, Constant, DistalDetails, ExplicitInput, Exposure, GridLayout, HHRate, HHTime, HHVariable, Include, InhomogeneousValue, InitMembPotential, Instance, IntracellularProperties, Layout, Location, Member, MembraneProperties, NamedDimensionalType, NamedDimensionalVariable, Path, PlasticityMechanism, Point3DWithDiam, Property, ProximalDetails, Q10ConductanceScaling, RandomLayout, Resistivity, SegmentEndPoint, SegmentParent, SpaceStructure, SpecificCapacitance, SpikeThresh, SubTree, SynapticConnection, UnstructuredLayout
+
+
+
public class BaseWithoutId +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base element without ID specified *yet*, e.g. for an element with a particular requirement on its id which does not comply with NmlId (e.g. Segment needs nonNegativeInteger). + +

Java class for BaseWithoutId complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BaseWithoutId">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BaseWithoutId

      +
      public BaseWithoutId()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BiophysicalProperties.html b/org/neuroml/model/BiophysicalProperties.html new file mode 100644 index 00000000..52957bb2 --- /dev/null +++ b/org/neuroml/model/BiophysicalProperties.html @@ -0,0 +1,397 @@ + + + + +BiophysicalProperties (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BiophysicalProperties

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BiophysicalProperties
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class BiophysicalProperties +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties** + + +

Java class for BiophysicalProperties complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BiophysicalProperties">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="membraneProperties" type="{http://www.neuroml.org/schema/neuroml2}MembraneProperties"/>
+         <element name="intracellularProperties" type="{http://www.neuroml.org/schema/neuroml2}IntracellularProperties" minOccurs="0"/>
+         <element name="extracellularProperties" type="{http://www.neuroml.org/schema/neuroml2}ExtracellularProperties" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BiophysicalProperties

      +
      public BiophysicalProperties()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getMembraneProperties

      +
      public MembraneProperties getMembraneProperties()
      +
      Gets the value of the membraneProperties property.
      +
      +
      Returns:
      +
      possible object is + MembraneProperties
      +
      +
      +
      • +
    • +
      +

      setMembraneProperties

      +
      public void setMembraneProperties(MembraneProperties value)
      +
      Sets the value of the membraneProperties property.
      +
      +
      Parameters:
      +
      value - allowed object is + MembraneProperties
      +
      +
      +
      • +
    • +
      +

      getIntracellularProperties

      +
      public IntracellularProperties getIntracellularProperties()
      +
      Gets the value of the intracellularProperties property.
      +
      +
      Returns:
      +
      possible object is + IntracellularProperties
      +
      +
      +
      • +
    • +
      +

      setIntracellularProperties

      +
      public void setIntracellularProperties(IntracellularProperties value)
      +
      Sets the value of the intracellularProperties property.
      +
      +
      Parameters:
      +
      value - allowed object is + IntracellularProperties
      +
      +
      +
      • +
    • +
      +

      getExtracellularProperties

      +
      public ExtracellularProperties getExtracellularProperties()
      +
      Gets the value of the extracellularProperties property.
      +
      +
      Returns:
      +
      possible object is + ExtracellularProperties
      +
      +
      +
      • +
    • +
      +

      setExtracellularProperties

      +
      public void setExtracellularProperties(ExtracellularProperties value)
      +
      Sets the value of the extracellularProperties property.
      +
      +
      Parameters:
      +
      value - allowed object is + ExtracellularProperties
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BiophysicalProperties2CaPools.html b/org/neuroml/model/BiophysicalProperties2CaPools.html new file mode 100644 index 00000000..cd0f4fa4 --- /dev/null +++ b/org/neuroml/model/BiophysicalProperties2CaPools.html @@ -0,0 +1,397 @@ + + + + +BiophysicalProperties2CaPools (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BiophysicalProperties2CaPools

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BiophysicalProperties2CaPools
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class BiophysicalProperties2CaPools +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools + + +

Java class for BiophysicalProperties2CaPools complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BiophysicalProperties2CaPools">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="membraneProperties2CaPools" type="{http://www.neuroml.org/schema/neuroml2}MembraneProperties2CaPools"/>
+         <element name="intracellularProperties2CaPools" type="{http://www.neuroml.org/schema/neuroml2}IntracellularProperties2CaPools" minOccurs="0"/>
+         <element name="extracellularProperties" type="{http://www.neuroml.org/schema/neuroml2}ExtracellularProperties" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BiophysicalProperties2CaPools

      +
      public BiophysicalProperties2CaPools()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getMembraneProperties2CaPools

      +
      public MembraneProperties2CaPools getMembraneProperties2CaPools()
      +
      Gets the value of the membraneProperties2CaPools property.
      +
      +
      Returns:
      +
      possible object is + MembraneProperties2CaPools
      +
      +
      +
      • +
    • +
      +

      setMembraneProperties2CaPools

      +
      public void setMembraneProperties2CaPools(MembraneProperties2CaPools value)
      +
      Sets the value of the membraneProperties2CaPools property.
      +
      +
      Parameters:
      +
      value - allowed object is + MembraneProperties2CaPools
      +
      +
      +
      • +
    • +
      +

      getIntracellularProperties2CaPools

      +
      public IntracellularProperties2CaPools getIntracellularProperties2CaPools()
      +
      Gets the value of the intracellularProperties2CaPools property.
      +
      +
      Returns:
      +
      possible object is + IntracellularProperties2CaPools
      +
      +
      +
      • +
    • +
      +

      setIntracellularProperties2CaPools

      +
      public void setIntracellularProperties2CaPools(IntracellularProperties2CaPools value)
      +
      Sets the value of the intracellularProperties2CaPools property.
      +
      +
      Parameters:
      +
      value - allowed object is + IntracellularProperties2CaPools
      +
      +
      +
      • +
    • +
      +

      getExtracellularProperties

      +
      public ExtracellularProperties getExtracellularProperties()
      +
      Gets the value of the extracellularProperties property.
      +
      +
      Returns:
      +
      possible object is + ExtracellularProperties
      +
      +
      +
      • +
    • +
      +

      setExtracellularProperties

      +
      public void setExtracellularProperties(ExtracellularProperties value)
      +
      Sets the value of the extracellularProperties property.
      +
      +
      Parameters:
      +
      value - allowed object is + ExtracellularProperties
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BlockMechanism.html b/org/neuroml/model/BlockMechanism.html new file mode 100644 index 00000000..007c3455 --- /dev/null +++ b/org/neuroml/model/BlockMechanism.html @@ -0,0 +1,464 @@ + + + + +BlockMechanism (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BlockMechanism

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BlockMechanism
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class BlockMechanism +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for BlockMechanism complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BlockMechanism">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="type" use="required" type="{http://www.neuroml.org/schema/neuroml2}BlockTypes" />
+       <attribute name="species" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="blockConcentration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_concentration" />
+       <attribute name="scalingConc" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_concentration" />
+       <attribute name="scalingVolt" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      type

      +
      protected BlockTypes type
      +
      +
      • +
    • +
      +

      species

      +
      protected String species
      +
      +
      • +
    • +
      +

      blockConcentration

      +
      protected String blockConcentration
      +
      +
      • +
    • +
      +

      scalingConc

      +
      protected String scalingConc
      +
      +
      • +
    • +
      +

      scalingVolt

      +
      protected String scalingVolt
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BlockMechanism

      +
      public BlockMechanism()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getType

      +
      public BlockTypes getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + BlockTypes
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(BlockTypes value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + BlockTypes
      +
      +
      +
      • +
    • +
      +

      getSpecies

      +
      public String getSpecies()
      +
      Gets the value of the species property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSpecies

      +
      public void setSpecies(String value)
      +
      Sets the value of the species property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getBlockConcentration

      +
      public String getBlockConcentration()
      +
      Gets the value of the blockConcentration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setBlockConcentration

      +
      public void setBlockConcentration(String value)
      +
      Sets the value of the blockConcentration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getScalingConc

      +
      public String getScalingConc()
      +
      Gets the value of the scalingConc property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setScalingConc

      +
      public void setScalingConc(String value)
      +
      Sets the value of the scalingConc property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getScalingVolt

      +
      public String getScalingVolt()
      +
      Gets the value of the scalingVolt property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setScalingVolt

      +
      public void setScalingVolt(String value)
      +
      Sets the value of the scalingVolt property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BlockTypes.html b/org/neuroml/model/BlockTypes.html new file mode 100644 index 00000000..d4c1509f --- /dev/null +++ b/org/neuroml/model/BlockTypes.html @@ -0,0 +1,243 @@ + + + + +BlockTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum BlockTypes

+
+
java.lang.Object +
java.lang.Enum<BlockTypes> +
org.neuroml.model.BlockTypes
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<BlockTypes>, java.lang.constant.Constable
+
+
+
public enum BlockTypes +extends Enum<BlockTypes>
+

Java class for BlockTypes. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="BlockTypes">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="voltageConcDepBlockMechanism"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      VOLTAGE_CONC_DEP_BLOCK_MECHANISM

      +
      public static final BlockTypes VOLTAGE_CONC_DEP_BLOCK_MECHANISM
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static BlockTypes[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static BlockTypes valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static BlockTypes fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/BlockingPlasticSynapse.html b/org/neuroml/model/BlockingPlasticSynapse.html new file mode 100644 index 00000000..38fd8699 --- /dev/null +++ b/org/neuroml/model/BlockingPlasticSynapse.html @@ -0,0 +1,389 @@ + + + + +BlockingPlasticSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class BlockingPlasticSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse +
org.neuroml.model.BaseConductanceBasedSynapse +
org.neuroml.model.ExpTwoSynapse +
org.neuroml.model.BlockingPlasticSynapse
+
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class BlockingPlasticSynapse +extends ExpTwoSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements. + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage + + + +

Java class for BlockingPlasticSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="BlockingPlasticSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}ExpTwoSynapse">
+       <sequence>
+         <element name="plasticityMechanism" type="{http://www.neuroml.org/schema/neuroml2}PlasticityMechanism" minOccurs="0"/>
+         <element name="blockMechanism" type="{http://www.neuroml.org/schema/neuroml2}BlockMechanism" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      BlockingPlasticSynapse

      +
      public BlockingPlasticSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPlasticityMechanism

      +
      public PlasticityMechanism getPlasticityMechanism()
      +
      Gets the value of the plasticityMechanism property.
      +
      +
      Returns:
      +
      possible object is + PlasticityMechanism
      +
      +
      +
      • +
    • +
      +

      setPlasticityMechanism

      +
      public void setPlasticityMechanism(PlasticityMechanism value)
      +
      Sets the value of the plasticityMechanism property.
      +
      +
      Parameters:
      +
      value - allowed object is + PlasticityMechanism
      +
      +
      +
      • +
    • +
      +

      getBlockMechanism

      +
      public BlockMechanism getBlockMechanism()
      +
      Gets the value of the blockMechanism property.
      +
      +
      Returns:
      +
      possible object is + BlockMechanism
      +
      +
      +
      • +
    • +
      +

      setBlockMechanism

      +
      public void setBlockMechanism(BlockMechanism value)
      +
      Sets the value of the blockMechanism property.
      +
      +
      Parameters:
      +
      value - allowed object is + BlockMechanism
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class ExpTwoSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class ExpTwoSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class ExpTwoSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Case.html b/org/neuroml/model/Case.html new file mode 100644 index 00000000..f9c8c9e1 --- /dev/null +++ b/org/neuroml/model/Case.html @@ -0,0 +1,326 @@ + + + + +Case (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Case

+
+
java.lang.Object +
org.neuroml.model.Case
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Case +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for Case complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Case">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <attribute name="condition" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      condition

      +
      protected String condition
      +
      +
      • +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Case

      +
      public Case()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getCondition

      +
      public String getCondition()
      +
      Gets the value of the condition property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setCondition

      +
      public void setCondition(String value)
      +
      Sets the value of the condition property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Cell.html b/org/neuroml/model/Cell.html new file mode 100644 index 00000000..608a1981 --- /dev/null +++ b/org/neuroml/model/Cell.html @@ -0,0 +1,453 @@ + + + + +Cell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Cell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.Cell
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
Cell2CaPools
+
+
+
public class Cell +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** . NOTE: this can only be correctly simulated using jLEMS when there is a single segment in the cell, and **v** of this cell represents the membrane potential in that isopotential segment. + + +

Java class for Cell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Cell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <sequence>
+         <element name="morphology" type="{http://www.neuroml.org/schema/neuroml2}Morphology" minOccurs="0"/>
+         <element name="biophysicalProperties" type="{http://www.neuroml.org/schema/neuroml2}BiophysicalProperties" minOccurs="0"/>
+       </sequence>
+       <attribute name="morphology" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="biophysicalProperties" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      morphology

      +
      protected Morphology morphology
      +
      +
      • +
    • +
      +

      biophysicalProperties

      +
      protected BiophysicalProperties biophysicalProperties
      +
      +
      • +
    • +
      +

      morphologyAttr

      +
      protected String morphologyAttr
      +
      +
      • +
    • +
      +

      biophysicalPropertiesAttr

      +
      protected String biophysicalPropertiesAttr
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Cell

      +
      public Cell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getMorphology

      +
      public Morphology getMorphology()
      +
      Gets the value of the morphology property.
      +
      +
      Returns:
      +
      possible object is + Morphology
      +
      +
      +
      • +
    • +
      +

      setMorphology

      +
      public void setMorphology(Morphology value)
      +
      Sets the value of the morphology property.
      +
      +
      Parameters:
      +
      value - allowed object is + Morphology
      +
      +
      +
      • +
    • +
      +

      getBiophysicalProperties

      +
      public BiophysicalProperties getBiophysicalProperties()
      +
      Gets the value of the biophysicalProperties property.
      +
      +
      Returns:
      +
      possible object is + BiophysicalProperties
      +
      +
      +
      • +
    • +
      +

      setBiophysicalProperties

      +
      public void setBiophysicalProperties(BiophysicalProperties value)
      +
      Sets the value of the biophysicalProperties property.
      +
      +
      Parameters:
      +
      value - allowed object is + BiophysicalProperties
      +
      +
      +
      • +
    • +
      +

      getMorphologyAttr

      +
      public String getMorphologyAttr()
      +
      Gets the value of the morphologyAttr property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setMorphologyAttr

      +
      public void setMorphologyAttr(String value)
      +
      Sets the value of the morphologyAttr property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getBiophysicalPropertiesAttr

      +
      public String getBiophysicalPropertiesAttr()
      +
      Gets the value of the biophysicalPropertiesAttr property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setBiophysicalPropertiesAttr

      +
      public void setBiophysicalPropertiesAttr(String value)
      +
      Sets the value of the biophysicalPropertiesAttr property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Cell2CaPools.html b/org/neuroml/model/Cell2CaPools.html new file mode 100644 index 00000000..ce95af01 --- /dev/null +++ b/org/neuroml/model/Cell2CaPools.html @@ -0,0 +1,325 @@ + + + + +Cell2CaPools (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Cell2CaPools

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.Cell +
org.neuroml.model.Cell2CaPools
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Cell2CaPools +extends Cell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Variant of cell with two independent Ca2+ pools. Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** . NOTE: this can only be correctly simulated using jLEMS when there is a single segment in the cell, and **v** of this cell represents the membrane potential in that isopotential segment. + + +

Java class for Cell2CaPools complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Cell2CaPools">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Cell">
+       <sequence>
+         <element name="biophysicalProperties2CaPools" type="{http://www.neuroml.org/schema/neuroml2}BiophysicalProperties2CaPools" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Cell2CaPools

      +
      public Cell2CaPools()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getBiophysicalProperties2CaPools

      +
      public BiophysicalProperties2CaPools getBiophysicalProperties2CaPools()
      +
      Gets the value of the biophysicalProperties2CaPools property.
      +
      +
      Returns:
      +
      possible object is + BiophysicalProperties2CaPools
      +
      +
      +
      • +
    • +
      +

      setBiophysicalProperties2CaPools

      +
      public void setBiophysicalProperties2CaPools(BiophysicalProperties2CaPools value)
      +
      Sets the value of the biophysicalProperties2CaPools property.
      +
      +
      Parameters:
      +
      value - allowed object is + BiophysicalProperties2CaPools
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Cell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Cell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Cell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/CellSet.html b/org/neuroml/model/CellSet.html new file mode 100644 index 00000000..cbcbe604 --- /dev/null +++ b/org/neuroml/model/CellSet.html @@ -0,0 +1,337 @@ + + + + +CellSet (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class CellSet

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.CellSet
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class CellSet +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for CellSet complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="CellSet">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <any processContents='skip' maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="select" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      any

      +
      protected List<Element> any
      +
      +
      • +
    • +
      +

      select

      +
      protected String select
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      CellSet

      +
      public CellSet()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAny

      +
      public List<Element> getAny()
      +
      Gets the value of the any property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the any property. + +

      + For example, to add a new item, do as follows: + 

      +    getAny().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Element

      +
      +
      • +
    • +
      +

      getSelect

      +
      public String getSelect()
      +
      Gets the value of the select property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSelect

      +
      public void setSelect(String value)
      +
      Sets the value of the select property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensity.html b/org/neuroml/model/ChannelDensity.html new file mode 100644 index 00000000..f2aefd0f --- /dev/null +++ b/org/neuroml/model/ChannelDensity.html @@ -0,0 +1,570 @@ + + + + +ChannelDensity (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensity

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensity
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ChannelDensityVShift
+
+
+
public class ChannelDensity +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** + \n + :param erev: The reversal potential of the current produced + :type erev: voltage + :param condDensity: + :type condDensity: conductanceDensity + + + +

Java class for ChannelDensity complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensity">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="variableParameter" type="{http://www.neuroml.org/schema/neuroml2}VariableParameter" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="ionChannel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="condDensity" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="erev" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+       <attribute name="segment" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      variableParameter

      +
      protected List<VariableParameter> variableParameter
      +
      +
      • +
    • +
      +

      ionChannel

      +
      protected String ionChannel
      +
      +
      • +
    • +
      +

      condDensity

      +
      protected String condDensity
      +
      +
      • +
    • +
      +

      erev

      +
      protected String erev
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    • +
      +

      segment

      +
      protected Integer segment
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensity

      +
      public ChannelDensity()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVariableParameter

      +
      public List<VariableParameter> getVariableParameter()
      +
      Gets the value of the variableParameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the variableParameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getVariableParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + VariableParameter

      +
      +
      • +
    • +
      +

      getIonChannel

      +
      public String getIonChannel()
      +
      Gets the value of the ionChannel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIonChannel

      +
      public void setIonChannel(String value)
      +
      Sets the value of the ionChannel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getCondDensity

      +
      public String getCondDensity()
      +
      Gets the value of the condDensity property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setCondDensity

      +
      public void setCondDensity(String value)
      +
      Sets the value of the condDensity property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getErev

      +
      public String getErev()
      +
      Gets the value of the erev property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setErev

      +
      public void setErev(String value)
      +
      Sets the value of the erev property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegment

      +
      public Integer getSegment()
      +
      Gets the value of the segment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegment

      +
      public void setSegment(Integer value)
      +
      Sets the value of the segment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensityGHK.html b/org/neuroml/model/ChannelDensityGHK.html new file mode 100644 index 00000000..acd23ef3 --- /dev/null +++ b/org/neuroml/model/ChannelDensityGHK.html @@ -0,0 +1,479 @@ + + + + +ChannelDensityGHK (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensityGHK

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensityGHK
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ChannelDensityGHK +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation. Hard coded for Ca only! See https://github.com/OpenSourceBrain/ghk-nernst. + \n + :param permeability: + :type permeability: permeability + + + +

Java class for ChannelDensityGHK complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensityGHK">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <attribute name="ionChannel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="permeability" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_permeability" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+       <attribute name="segment" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      ionChannel

      +
      protected String ionChannel
      +
      +
      • +
    • +
      +

      permeability

      +
      protected String permeability
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    • +
      +

      segment

      +
      protected String segment
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensityGHK

      +
      public ChannelDensityGHK()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getIonChannel

      +
      public String getIonChannel()
      +
      Gets the value of the ionChannel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIonChannel

      +
      public void setIonChannel(String value)
      +
      Sets the value of the ionChannel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPermeability

      +
      public String getPermeability()
      +
      Gets the value of the permeability property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPermeability

      +
      public void setPermeability(String value)
      +
      Sets the value of the permeability property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegment

      +
      public String getSegment()
      +
      Gets the value of the segment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegment

      +
      public void setSegment(String value)
      +
      Sets the value of the segment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensityGHK2.html b/org/neuroml/model/ChannelDensityGHK2.html new file mode 100644 index 00000000..2592ab5c --- /dev/null +++ b/org/neuroml/model/ChannelDensityGHK2.html @@ -0,0 +1,479 @@ + + + + +ChannelDensityGHK2 (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensityGHK2

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensityGHK2
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ChannelDensityGHK2 +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al. 1994 ( used also in Lawrence et al. 2006 ). See https://github.com/OpenSourceBrain/ghk-nernst. + \n + :param condDensity: + :type condDensity: conductanceDensity + + + +

Java class for ChannelDensityGHK2 complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensityGHK2">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <attribute name="ionChannel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="condDensity" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+       <attribute name="segment" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      ionChannel

      +
      protected String ionChannel
      +
      +
      • +
    • +
      +

      condDensity

      +
      protected String condDensity
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    • +
      +

      segment

      +
      protected String segment
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensityGHK2

      +
      public ChannelDensityGHK2()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getIonChannel

      +
      public String getIonChannel()
      +
      Gets the value of the ionChannel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIonChannel

      +
      public void setIonChannel(String value)
      +
      Sets the value of the ionChannel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getCondDensity

      +
      public String getCondDensity()
      +
      Gets the value of the condDensity property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setCondDensity

      +
      public void setCondDensity(String value)
      +
      Sets the value of the condDensity property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegment

      +
      public String getSegment()
      +
      Gets the value of the segment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegment

      +
      public void setSegment(String value)
      +
      Sets the value of the segment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensityNernst.html b/org/neuroml/model/ChannelDensityNernst.html new file mode 100644 index 00000000..4540d8d9 --- /dev/null +++ b/org/neuroml/model/ChannelDensityNernst.html @@ -0,0 +1,524 @@ + + + + +ChannelDensityNernst (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensityNernst

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensityNernst
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ChannelDensityNernstCa2
+
+
+
public class ChannelDensityNernst +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation. Hard coded for Ca only! See https://github.com/OpenSourceBrain/ghk-nernst. + \n + :param condDensity: + :type condDensity: conductanceDensity + + + +

Java class for ChannelDensityNernst complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensityNernst">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="variableParameter" type="{http://www.neuroml.org/schema/neuroml2}VariableParameter" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="ionChannel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="condDensity" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+       <attribute name="segment" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      variableParameter

      +
      protected List<VariableParameter> variableParameter
      +
      +
      • +
    • +
      +

      ionChannel

      +
      protected String ionChannel
      +
      +
      • +
    • +
      +

      condDensity

      +
      protected String condDensity
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    • +
      +

      segment

      +
      protected String segment
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensityNernst

      +
      public ChannelDensityNernst()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVariableParameter

      +
      public List<VariableParameter> getVariableParameter()
      +
      Gets the value of the variableParameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the variableParameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getVariableParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + VariableParameter

      +
      +
      • +
    • +
      +

      getIonChannel

      +
      public String getIonChannel()
      +
      Gets the value of the ionChannel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIonChannel

      +
      public void setIonChannel(String value)
      +
      Sets the value of the ionChannel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getCondDensity

      +
      public String getCondDensity()
      +
      Gets the value of the condDensity property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setCondDensity

      +
      public void setCondDensity(String value)
      +
      Sets the value of the condDensity property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegment

      +
      public String getSegment()
      +
      Gets the value of the segment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegment

      +
      public void setSegment(String value)
      +
      Sets the value of the segment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensityNernstCa2.html b/org/neuroml/model/ChannelDensityNernstCa2.html new file mode 100644 index 00000000..bee3aca4 --- /dev/null +++ b/org/neuroml/model/ChannelDensityNernstCa2.html @@ -0,0 +1,253 @@ + + + + +ChannelDensityNernstCa2 (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensityNernstCa2

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensityNernst +
org.neuroml.model.ChannelDensityNernstCa2
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ChannelDensityNernstCa2 +extends ChannelDensityNernst +implements org.jvnet.jaxb2_commons.lang.ToString2
+
This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ). See https://github.com/OpenSourceBrain/ghk-nernst. + \n + :param condDensity: + :type condDensity: conductanceDensity + + + +

Java class for ChannelDensityNernstCa2 complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensityNernstCa2">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}ChannelDensityNernst">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensityNernstCa2

      +
      public ChannelDensityNernstCa2()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class ChannelDensityNernst
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class ChannelDensityNernst
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class ChannelDensityNernst
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensityNonUniform.html b/org/neuroml/model/ChannelDensityNonUniform.html new file mode 100644 index 00000000..538decc1 --- /dev/null +++ b/org/neuroml/model/ChannelDensityNonUniform.html @@ -0,0 +1,432 @@ + + + + +ChannelDensityNonUniform (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensityNonUniform

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensityNonUniform
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ChannelDensityNonUniform +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** . Note, there is no dynamical description of this in LEMS yet, as this type only makes sense for multicompartmental cells. A ComponentType for this needs to be present to enable export of NeuroML 2 multicompartmental cells via LEMS/jNeuroML to NEURON + \n + :param erev: The reversal potential of the current produced + :type erev: voltage + + + +

Java class for ChannelDensityNonUniform complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensityNonUniform">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="variableParameter" type="{http://www.neuroml.org/schema/neuroml2}VariableParameter" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="ionChannel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="erev" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      variableParameter

      +
      protected List<VariableParameter> variableParameter
      +
      +
      • +
    • +
      +

      ionChannel

      +
      protected String ionChannel
      +
      +
      • +
    • +
      +

      erev

      +
      protected String erev
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensityNonUniform

      +
      public ChannelDensityNonUniform()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVariableParameter

      +
      public List<VariableParameter> getVariableParameter()
      +
      Gets the value of the variableParameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the variableParameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getVariableParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + VariableParameter

      +
      +
      • +
    • +
      +

      getIonChannel

      +
      public String getIonChannel()
      +
      Gets the value of the ionChannel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIonChannel

      +
      public void setIonChannel(String value)
      +
      Sets the value of the ionChannel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getErev

      +
      public String getErev()
      +
      Gets the value of the erev property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setErev

      +
      public void setErev(String value)
      +
      Sets the value of the erev property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensityNonUniformGHK.html b/org/neuroml/model/ChannelDensityNonUniformGHK.html new file mode 100644 index 00000000..5abce09a --- /dev/null +++ b/org/neuroml/model/ChannelDensityNonUniformGHK.html @@ -0,0 +1,384 @@ + + + + +ChannelDensityNonUniformGHK (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensityNonUniformGHK

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensityNonUniformGHK
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ChannelDensityNonUniformGHK +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation. Hard coded for Ca only!. The conductance density of the channel is not uniform, but is set using the **variableParameter** . Note, there is no dynamical description of this in LEMS yet, as this type only makes sense for multicompartmental cells. A ComponentType for this needs to be present to enable export of NeuroML 2 multicompartmental cells via LEMS/jNeuroML to NEURON + + +

Java class for ChannelDensityNonUniformGHK complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensityNonUniformGHK">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="variableParameter" type="{http://www.neuroml.org/schema/neuroml2}VariableParameter" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="ionChannel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      variableParameter

      +
      protected List<VariableParameter> variableParameter
      +
      +
      • +
    • +
      +

      ionChannel

      +
      protected String ionChannel
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensityNonUniformGHK

      +
      public ChannelDensityNonUniformGHK()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVariableParameter

      +
      public List<VariableParameter> getVariableParameter()
      +
      Gets the value of the variableParameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the variableParameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getVariableParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + VariableParameter

      +
      +
      • +
    • +
      +

      getIonChannel

      +
      public String getIonChannel()
      +
      Gets the value of the ionChannel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIonChannel

      +
      public void setIonChannel(String value)
      +
      Sets the value of the ionChannel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensityNonUniformNernst.html b/org/neuroml/model/ChannelDensityNonUniformNernst.html new file mode 100644 index 00000000..6a8d7ecf --- /dev/null +++ b/org/neuroml/model/ChannelDensityNonUniformNernst.html @@ -0,0 +1,384 @@ + + + + +ChannelDensityNonUniformNernst (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensityNonUniformNernst

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensityNonUniformNernst
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ChannelDensityNonUniformNernst +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation. Hard coded for Ca only!. The conductance density of the channel is not uniform, but is set using the **variableParameter** . Note, there is no dynamical description of this in LEMS yet, as this type only makes sense for multicompartmental cells. A ComponentType for this needs to be present to enable export of NeuroML 2 multicompartmental cells via LEMS/jNeuroML to NEURON + + +

Java class for ChannelDensityNonUniformNernst complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensityNonUniformNernst">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="variableParameter" type="{http://www.neuroml.org/schema/neuroml2}VariableParameter" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="ionChannel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      variableParameter

      +
      protected List<VariableParameter> variableParameter
      +
      +
      • +
    • +
      +

      ionChannel

      +
      protected String ionChannel
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensityNonUniformNernst

      +
      public ChannelDensityNonUniformNernst()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVariableParameter

      +
      public List<VariableParameter> getVariableParameter()
      +
      Gets the value of the variableParameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the variableParameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getVariableParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + VariableParameter

      +
      +
      • +
    • +
      +

      getIonChannel

      +
      public String getIonChannel()
      +
      Gets the value of the ionChannel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIonChannel

      +
      public void setIonChannel(String value)
      +
      Sets the value of the ionChannel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelDensityVShift.html b/org/neuroml/model/ChannelDensityVShift.html new file mode 100644 index 00000000..d27185b7 --- /dev/null +++ b/org/neuroml/model/ChannelDensityVShift.html @@ -0,0 +1,315 @@ + + + + +ChannelDensityVShift (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelDensityVShift

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelDensity +
org.neuroml.model.ChannelDensityVShift
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ChannelDensityVShift +extends ChannelDensity +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates. The exact usage of **vShift** in expressions for rates is determined by the individual gates. + \n + :param vShift: + :type vShift: voltage + :param erev: The reversal potential of the current produced + :type erev: voltage + :param condDensity: + :type condDensity: conductanceDensity + + + +

Java class for ChannelDensityVShift complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelDensityVShift">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}ChannelDensity">
+       <attribute name="vShift" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      vShift

      +
      protected String vShift
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelDensityVShift

      +
      public ChannelDensityVShift()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVShift

      +
      public String getVShift()
      +
      Gets the value of the vShift property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVShift

      +
      public void setVShift(String value)
      +
      Sets the value of the vShift property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class ChannelDensity
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class ChannelDensity
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class ChannelDensity
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelPopulation.html b/org/neuroml/model/ChannelPopulation.html new file mode 100644 index 00000000..e53c09d8 --- /dev/null +++ b/org/neuroml/model/ChannelPopulation.html @@ -0,0 +1,566 @@ + + + + +ChannelPopulation (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ChannelPopulation

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ChannelPopulation
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ChannelPopulation +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Population of a **number** of ohmic ion channels. These each produce a conductance **channelg** across a reversal potential **erev,** giving a total current **i.** Note that active membrane currents are more frequently specified as a density over an area of the **cell** using **channelDensity** + \n + :param number: The number of channels present. This will be multiplied by the time varying conductance of the individual ion channel ( which extends **baseIonChannel** ) to produce the total conductance + :type number: none + :param erev: The reversal potential of the current produced + :type erev: voltage + + + +

Java class for ChannelPopulation complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ChannelPopulation">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="variableParameter" type="{http://www.neuroml.org/schema/neuroml2}VariableParameter" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="ionChannel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="number" use="required" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+       <attribute name="erev" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+       <attribute name="segment" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      variableParameter

      +
      protected List<VariableParameter> variableParameter
      +
      +
      • +
    • +
      +

      ionChannel

      +
      protected String ionChannel
      +
      +
      • +
    • +
      +

      number

      +
      protected Integer number
      +
      +
      • +
    • +
      +

      erev

      +
      protected String erev
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    • +
      +

      segment

      +
      protected Integer segment
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ChannelPopulation

      +
      public ChannelPopulation()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVariableParameter

      +
      public List<VariableParameter> getVariableParameter()
      +
      Gets the value of the variableParameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the variableParameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getVariableParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + VariableParameter

      +
      +
      • +
    • +
      +

      getIonChannel

      +
      public String getIonChannel()
      +
      Gets the value of the ionChannel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIonChannel

      +
      public void setIonChannel(String value)
      +
      Sets the value of the ionChannel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getNumber

      +
      public Integer getNumber()
      +
      Gets the value of the number property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNumber

      +
      public void setNumber(Integer value)
      +
      Sets the value of the number property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getErev

      +
      public String getErev()
      +
      Gets the value of the erev property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setErev

      +
      public void setErev(String value)
      +
      Sets the value of the erev property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegment

      +
      public Integer getSegment()
      +
      Gets the value of the segment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegment

      +
      public void setSegment(Integer value)
      +
      Sets the value of the segment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ChannelTypes.html b/org/neuroml/model/ChannelTypes.html new file mode 100644 index 00000000..a860865f --- /dev/null +++ b/org/neuroml/model/ChannelTypes.html @@ -0,0 +1,252 @@ + + + + +ChannelTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum ChannelTypes

+
+
java.lang.Object +
java.lang.Enum<ChannelTypes> +
org.neuroml.model.ChannelTypes
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<ChannelTypes>, java.lang.constant.Constable
+
+
+
public enum ChannelTypes +extends Enum<ChannelTypes>
+

Java class for channelTypes. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="channelTypes">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="ionChannelPassive"/>
+     <enumeration value="ionChannelHH"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      ION_CHANNEL_PASSIVE

      +
      public static final ChannelTypes ION_CHANNEL_PASSIVE
      +
      +
      • +
    • +
      +

      ION_CHANNEL_HH

      +
      public static final ChannelTypes ION_CHANNEL_HH
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static ChannelTypes[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static ChannelTypes valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static ChannelTypes fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ClosedState.html b/org/neuroml/model/ClosedState.html new file mode 100644 index 00000000..808be50f --- /dev/null +++ b/org/neuroml/model/ClosedState.html @@ -0,0 +1,245 @@ + + + + +ClosedState (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ClosedState

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ClosedState
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ClosedState +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A **KSState** with **relativeConductance** of 0 + \n + :param relativeConductance: + :type relativeConductance: none + + + +

Java class for ClosedState complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ClosedState">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ClosedState

      +
      public ClosedState()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ComponentType.html b/org/neuroml/model/ComponentType.html new file mode 100644 index 00000000..363c8131 --- /dev/null +++ b/org/neuroml/model/ComponentType.html @@ -0,0 +1,686 @@ + + + + +ComponentType (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ComponentType

+
+
java.lang.Object +
org.neuroml.model.ComponentType
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ComponentType +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Contains an extension to NeuroML by creating custom LEMS ComponentType. + +

Java class for ComponentType complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ComponentType">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <sequence>
+         <element name="Property" type="{http://www.neuroml.org/schema/neuroml2}LEMS_Property" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="Parameter" type="{http://www.neuroml.org/schema/neuroml2}Parameter" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="DerivedParameter" type="{http://www.neuroml.org/schema/neuroml2}DerivedParameter" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="Constant" type="{http://www.neuroml.org/schema/neuroml2}Constant" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="Exposure" type="{http://www.neuroml.org/schema/neuroml2}Exposure" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="Requirement" type="{http://www.neuroml.org/schema/neuroml2}Requirement" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="InstanceRequirement" type="{http://www.neuroml.org/schema/neuroml2}InstanceRequirement" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="Dynamics" type="{http://www.neuroml.org/schema/neuroml2}Dynamics" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="extends" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ComponentType

      +
      public ComponentType()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getProperty

      +
      public List<LEMSProperty> getProperty()
      +
      Gets the value of the property property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the property property. + +

      + For example, to add a new item, do as follows: + 

      +    getProperty().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + LEMSProperty

      +
      +
      • +
    • +
      +

      getParameter

      +
      public List<Parameter> getParameter()
      +
      Gets the value of the parameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the parameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Parameter

      +
      +
      • +
    • +
      +

      getDerivedParameter

      +
      public List<DerivedParameter> getDerivedParameter()
      +
      Gets the value of the derivedParameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the derivedParameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getDerivedParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + DerivedParameter

      +
      +
      • +
    • +
      +

      getConstant

      +
      public List<Constant> getConstant()
      +
      Gets the value of the constant property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the constant property. + +

      + For example, to add a new item, do as follows: + 

      +    getConstant().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Constant

      +
      +
      • +
    • +
      +

      getExposure

      +
      public List<Exposure> getExposure()
      +
      Gets the value of the exposure property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the exposure property. + +

      + For example, to add a new item, do as follows: + 

      +    getExposure().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Exposure

      +
      +
      • +
    • +
      +

      getRequirement

      +
      public List<Requirement> getRequirement()
      +
      Gets the value of the requirement property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the requirement property. + +

      + For example, to add a new item, do as follows: + 

      +    getRequirement().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Requirement

      +
      +
      • +
    • +
      +

      getInstanceRequirement

      +
      public List<InstanceRequirement> getInstanceRequirement()
      +
      Gets the value of the instanceRequirement property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the instanceRequirement property. + +

      + For example, to add a new item, do as follows: + 

      +    getInstanceRequirement().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + InstanceRequirement

      +
      +
      • +
    • +
      +

      getDynamics

      +
      public List<Dynamics> getDynamics()
      +
      Gets the value of the dynamics property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the dynamics property. + +

      + For example, to add a new item, do as follows: + 

      +    getDynamics().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Dynamics

      +
      +
      • +
    • +
      +

      getName

      +
      public String getName()
      +
      Gets the value of the name property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setName

      +
      public void setName(String value)
      +
      Sets the value of the name property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getExtends

      +
      public String getExtends()
      +
      Gets the value of the extends property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setExtends

      +
      public void setExtends(String value)
      +
      Sets the value of the extends property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDescription

      +
      public String getDescription()
      +
      Gets the value of the description property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDescription

      +
      public void setDescription(String value)
      +
      Sets the value of the description property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/CompoundInput.html b/org/neuroml/model/CompoundInput.html new file mode 100644 index 00000000..1bf45250 --- /dev/null +++ b/org/neuroml/model/CompoundInput.html @@ -0,0 +1,382 @@ + + + + +CompoundInput (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class CompoundInput

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.CompoundInput
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class CompoundInput +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Generates a current which is the sum of all its child **basePointCurrent** element, e. g. can be a combination of **pulseGenerator** , **sineGenerator** elements producing a single **i.** Scaled by **weight,** if set + + +

Java class for CompoundInput complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="CompoundInput">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="pulseGenerator" type="{http://www.neuroml.org/schema/neuroml2}PulseGenerator" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="sineGenerator" type="{http://www.neuroml.org/schema/neuroml2}SineGenerator" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="rampGenerator" type="{http://www.neuroml.org/schema/neuroml2}RampGenerator" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      CompoundInput

      +
      public CompoundInput()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPulseGenerator

      +
      public List<PulseGenerator> getPulseGenerator()
      +
      Gets the value of the pulseGenerator property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the pulseGenerator property. + +

      + For example, to add a new item, do as follows: + 

      +    getPulseGenerator().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + PulseGenerator

      +
      +
      • +
    • +
      +

      getSineGenerator

      +
      public List<SineGenerator> getSineGenerator()
      +
      Gets the value of the sineGenerator property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the sineGenerator property. + +

      + For example, to add a new item, do as follows: + 

      +    getSineGenerator().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SineGenerator

      +
      +
      • +
    • +
      +

      getRampGenerator

      +
      public List<RampGenerator> getRampGenerator()
      +
      Gets the value of the rampGenerator property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the rampGenerator property. + +

      + For example, to add a new item, do as follows: + 

      +    getRampGenerator().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + RampGenerator

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/CompoundInputDL.html b/org/neuroml/model/CompoundInputDL.html new file mode 100644 index 00000000..532e7264 --- /dev/null +++ b/org/neuroml/model/CompoundInputDL.html @@ -0,0 +1,382 @@ + + + + +CompoundInputDL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class CompoundInputDL

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.CompoundInputDL
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class CompoundInputDL +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Generates a current which is the sum of all its child **basePointCurrentDL** elements, e. g. can be a combination of **pulseGeneratorDL** , **sineGeneratorDL** elements producing a single **i.** Scaled by **weight,** if set + + +

Java class for CompoundInputDL complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="CompoundInputDL">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="pulseGeneratorDL" type="{http://www.neuroml.org/schema/neuroml2}PulseGeneratorDL" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="sineGeneratorDL" type="{http://www.neuroml.org/schema/neuroml2}SineGeneratorDL" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="rampGeneratorDL" type="{http://www.neuroml.org/schema/neuroml2}RampGeneratorDL" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      CompoundInputDL

      +
      public CompoundInputDL()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPulseGeneratorDL

      +
      public List<PulseGeneratorDL> getPulseGeneratorDL()
      +
      Gets the value of the pulseGeneratorDL property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the pulseGeneratorDL property. + +

      + For example, to add a new item, do as follows: + 

      +    getPulseGeneratorDL().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + PulseGeneratorDL

      +
      +
      • +
    • +
      +

      getSineGeneratorDL

      +
      public List<SineGeneratorDL> getSineGeneratorDL()
      +
      Gets the value of the sineGeneratorDL property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the sineGeneratorDL property. + +

      + For example, to add a new item, do as follows: + 

      +    getSineGeneratorDL().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SineGeneratorDL

      +
      +
      • +
    • +
      +

      getRampGeneratorDL

      +
      public List<RampGeneratorDL> getRampGeneratorDL()
      +
      Gets the value of the rampGeneratorDL property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the rampGeneratorDL property. + +

      + For example, to add a new item, do as follows: + 

      +    getRampGeneratorDL().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + RampGeneratorDL

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ConcentrationModelD.html b/org/neuroml/model/ConcentrationModelD.html new file mode 100644 index 00000000..4c953790 --- /dev/null +++ b/org/neuroml/model/ConcentrationModelD.html @@ -0,0 +1,312 @@ + + + + +ConcentrationModelD (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ConcentrationModelD

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.DecayingPoolConcentrationModel +
org.neuroml.model.ConcentrationModelD
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ConcentrationModelD +extends DecayingPoolConcentrationModel +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for ConcentrationModel_D complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ConcentrationModel_D">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}DecayingPoolConcentrationModel">
+       <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" fixed="decayingPoolConcentrationModel" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      type

      +
      protected String type
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ConcentrationModelD

      +
      public ConcentrationModelD()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getType

      +
      public String getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(String value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class DecayingPoolConcentrationModel
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class DecayingPoolConcentrationModel
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class DecayingPoolConcentrationModel
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ConditionalDerivedVariable.html b/org/neuroml/model/ConditionalDerivedVariable.html new file mode 100644 index 00000000..8d773a95 --- /dev/null +++ b/org/neuroml/model/ConditionalDerivedVariable.html @@ -0,0 +1,293 @@ + + + + +ConditionalDerivedVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ConditionalDerivedVariable

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalVariable +
org.neuroml.model.ConditionalDerivedVariable
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ConditionalDerivedVariable +extends NamedDimensionalVariable +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for ConditionalDerivedVariable complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ConditionalDerivedVariable">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}NamedDimensionalVariable">
+       <sequence>
+         <element name="Case" type="{http://www.neuroml.org/schema/neuroml2}Case" maxOccurs="unbounded"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      _case

      +
      protected List<Case> _case
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ConditionalDerivedVariable

      +
      public ConditionalDerivedVariable()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getCase

      +
      public List<Case> getCase()
      +
      Gets the value of the case property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the case property. + +

      + For example, to add a new item, do as follows: + 

      +    getCase().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Case

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class NamedDimensionalVariable
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class NamedDimensionalVariable
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class NamedDimensionalVariable
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Connection.html b/org/neuroml/model/Connection.html new file mode 100644 index 00000000..c1fe12b5 --- /dev/null +++ b/org/neuroml/model/Connection.html @@ -0,0 +1,257 @@ + + + + +Connection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Connection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionOldFormat +
org.neuroml.model.Connection
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Connection +extends BaseConnectionOldFormat +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component. Normally contained inside a **projection** element. + + +

Java class for Connection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Connection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConnectionOldFormat">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Connection

      +
      public Connection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConnectionOldFormat
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConnectionOldFormat
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConnectionOldFormat
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ConnectionWD.html b/org/neuroml/model/ConnectionWD.html new file mode 100644 index 00000000..37eb0e87 --- /dev/null +++ b/org/neuroml/model/ConnectionWD.html @@ -0,0 +1,355 @@ + + + + +ConnectionWD (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ConnectionWD

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionOldFormat +
org.neuroml.model.ConnectionWD
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ConnectionWD +extends BaseConnectionOldFormat +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection + \n + :param weight: + :type weight: none + :param delay: + :type delay: time + + + +

Java class for ConnectionWD complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ConnectionWD">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConnectionOldFormat">
+       <attribute name="weight" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      weight

      +
      protected float weight
      +
      +
      • +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ConnectionWD

      +
      public ConnectionWD()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getWeight

      +
      public float getWeight()
      +
      Gets the value of the weight property.
      +
      +
      • +
    • +
      +

      setWeight

      +
      public void setWeight(float value)
      +
      Sets the value of the weight property.
      +
      +
      • +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConnectionOldFormat
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConnectionOldFormat
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConnectionOldFormat
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Constant.html b/org/neuroml/model/Constant.html new file mode 100644 index 00000000..b2559603 --- /dev/null +++ b/org/neuroml/model/Constant.html @@ -0,0 +1,422 @@ + + + + +Constant (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Constant

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Constant
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Constant +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
LEMS ComponentType for Constant. + +

Java class for Constant complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Constant">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="dimension" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="value" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity" />
+       <attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      name

      +
      protected String name
      +
      +
      • +
    • +
      +

      dimension

      +
      protected String dimension
      +
      +
      • +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    • +
      +

      description

      +
      protected String description
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Constant

      +
      public Constant()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getName

      +
      public String getName()
      +
      Gets the value of the name property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setName

      +
      public void setName(String value)
      +
      Sets the value of the name property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDimension

      +
      public String getDimension()
      +
      Gets the value of the dimension property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDimension

      +
      public void setDimension(String value)
      +
      Sets the value of the dimension property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDescription

      +
      public String getDescription()
      +
      Gets the value of the description property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDescription

      +
      public void setDescription(String value)
      +
      Sets the value of the description property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ContinuousConnection.html b/org/neuroml/model/ContinuousConnection.html new file mode 100644 index 00000000..46deff83 --- /dev/null +++ b/org/neuroml/model/ContinuousConnection.html @@ -0,0 +1,363 @@ + + + + +ContinuousConnection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ContinuousConnection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionNewFormat +
org.neuroml.model.ContinuousConnection
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ContinuousConnectionInstance
+
+
+
public class ContinuousConnection +extends BaseConnectionNewFormat +implements org.jvnet.jaxb2_commons.lang.ToString2
+
An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end. Can be used for analog synapses. + + +

Java class for ContinuousConnection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ContinuousConnection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConnectionNewFormat">
+       <attribute name="preComponent" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="postComponent" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      preComponent

      +
      protected String preComponent
      +
      +
      • +
    • +
      +

      postComponent

      +
      protected String postComponent
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ContinuousConnection

      +
      public ContinuousConnection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPreComponent

      +
      public String getPreComponent()
      +
      Gets the value of the preComponent property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPreComponent

      +
      public void setPreComponent(String value)
      +
      Sets the value of the preComponent property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPostComponent

      +
      public String getPostComponent()
      +
      Gets the value of the postComponent property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPostComponent

      +
      public void setPostComponent(String value)
      +
      Sets the value of the postComponent property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConnectionNewFormat
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConnectionNewFormat
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConnectionNewFormat
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ContinuousConnectionInstance.html b/org/neuroml/model/ContinuousConnectionInstance.html new file mode 100644 index 00000000..9a9f1f6f --- /dev/null +++ b/org/neuroml/model/ContinuousConnectionInstance.html @@ -0,0 +1,269 @@ + + + + +ContinuousConnectionInstance (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ContinuousConnectionInstance

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionNewFormat +
org.neuroml.model.ContinuousConnection +
org.neuroml.model.ContinuousConnectionInstance
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ContinuousConnectionInstanceW
+
+
+
public class ContinuousConnectionInstance +extends ContinuousConnection +implements org.jvnet.jaxb2_commons.lang.ToString2
+
An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end. Populations need to be of type **populationList** and contain **instance** and **location** elements. Can be used for analog synapses. + + +

Java class for ContinuousConnectionInstance complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ContinuousConnectionInstance">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}ContinuousConnection">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ContinuousConnectionInstance

      +
      public ContinuousConnectionInstance()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class ContinuousConnection
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class ContinuousConnection
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class ContinuousConnection
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ContinuousConnectionInstanceW.html b/org/neuroml/model/ContinuousConnectionInstanceW.html new file mode 100644 index 00000000..ace562ea --- /dev/null +++ b/org/neuroml/model/ContinuousConnectionInstanceW.html @@ -0,0 +1,319 @@ + + + + +ContinuousConnectionInstanceW (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ContinuousConnectionInstanceW

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionNewFormat +
org.neuroml.model.ContinuousConnection +
org.neuroml.model.ContinuousConnectionInstance +
org.neuroml.model.ContinuousConnectionInstanceW
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ContinuousConnectionInstanceW +extends ContinuousConnectionInstance +implements org.jvnet.jaxb2_commons.lang.ToString2
+
An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end. Populations need to be of type **populationList** and contain **instance** and **location** elements. Can be used for analog synapses. Includes setting of **weight** for the connection + \n + :param weight: + :type weight: none + + + +

Java class for ContinuousConnectionInstanceW complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ContinuousConnectionInstanceW">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}ContinuousConnectionInstance">
+       <attribute name="weight" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      weight

      +
      protected float weight
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ContinuousConnectionInstanceW

      +
      public ContinuousConnectionInstanceW()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getWeight

      +
      public float getWeight()
      +
      Gets the value of the weight property.
      +
      +
      • +
    • +
      +

      setWeight

      +
      public void setWeight(float value)
      +
      Sets the value of the weight property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class ContinuousConnectionInstance
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class ContinuousConnectionInstance
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class ContinuousConnectionInstance
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ContinuousProjection.html b/org/neuroml/model/ContinuousProjection.html new file mode 100644 index 00000000..f5038a0e --- /dev/null +++ b/org/neuroml/model/ContinuousProjection.html @@ -0,0 +1,382 @@ + + + + +ContinuousProjection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ContinuousProjection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.BaseProjection +
org.neuroml.model.ContinuousProjection
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ContinuousProjection +extends BaseProjection +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** . Can be used for analog synapses. + + +

Java class for ContinuousProjection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ContinuousProjection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseProjection">
+       <sequence>
+         <element name="continuousConnection" type="{http://www.neuroml.org/schema/neuroml2}ContinuousConnection" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="continuousConnectionInstance" type="{http://www.neuroml.org/schema/neuroml2}ContinuousConnectionInstance" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="continuousConnectionInstanceW" type="{http://www.neuroml.org/schema/neuroml2}ContinuousConnectionInstanceW" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ContinuousProjection

      +
      public ContinuousProjection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getContinuousConnection

      +
      public List<ContinuousConnection> getContinuousConnection()
      +
      Gets the value of the continuousConnection property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the continuousConnection property. + +

      + For example, to add a new item, do as follows: + 

      +    getContinuousConnection().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ContinuousConnection

      +
      +
      • +
    • +
      +

      getContinuousConnectionInstance

      +
      public List<ContinuousConnectionInstance> getContinuousConnectionInstance()
      +
      Gets the value of the continuousConnectionInstance property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the continuousConnectionInstance property. + +

      + For example, to add a new item, do as follows: + 

      +    getContinuousConnectionInstance().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ContinuousConnectionInstance

      +
      +
      • +
    • +
      +

      getContinuousConnectionInstanceW

      +
      public List<ContinuousConnectionInstanceW> getContinuousConnectionInstanceW()
      +
      Gets the value of the continuousConnectionInstanceW property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the continuousConnectionInstanceW property. + +

      + For example, to add a new item, do as follows: + 

      +    getContinuousConnectionInstanceW().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ContinuousConnectionInstanceW

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseProjection
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseProjection
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseProjection
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/DecayingPoolConcentrationModel.html b/org/neuroml/model/DecayingPoolConcentrationModel.html new file mode 100644 index 00000000..10c8ddae --- /dev/null +++ b/org/neuroml/model/DecayingPoolConcentrationModel.html @@ -0,0 +1,451 @@ + + + + +DecayingPoolConcentrationModel (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class DecayingPoolConcentrationModel

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.DecayingPoolConcentrationModel
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ConcentrationModelD
+
+
+
public class DecayingPoolConcentrationModel +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param shellThickness: + :type shellThickness: length + + + +

Java class for DecayingPoolConcentrationModel complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="DecayingPoolConcentrationModel">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="restingConc" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_concentration" />
+       <attribute name="decayConstant" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="shellThickness" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_length" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    • +
      +

      restingConc

      +
      protected String restingConc
      +
      +
      • +
    • +
      +

      decayConstant

      +
      protected String decayConstant
      +
      +
      • +
    • +
      +

      shellThickness

      +
      protected String shellThickness
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      DecayingPoolConcentrationModel

      +
      public DecayingPoolConcentrationModel()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getRestingConc

      +
      public String getRestingConc()
      +
      Gets the value of the restingConc property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRestingConc

      +
      public void setRestingConc(String value)
      +
      Sets the value of the restingConc property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDecayConstant

      +
      public String getDecayConstant()
      +
      Gets the value of the decayConstant property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDecayConstant

      +
      public void setDecayConstant(String value)
      +
      Sets the value of the decayConstant property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getShellThickness

      +
      public String getShellThickness()
      +
      Gets the value of the shellThickness property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setShellThickness

      +
      public void setShellThickness(String value)
      +
      Sets the value of the shellThickness property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/DerivedParameter.html b/org/neuroml/model/DerivedParameter.html new file mode 100644 index 00000000..5d914dfa --- /dev/null +++ b/org/neuroml/model/DerivedParameter.html @@ -0,0 +1,298 @@ + + + + +DerivedParameter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class DerivedParameter

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalType +
org.neuroml.model.DerivedParameter
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class DerivedParameter +extends NamedDimensionalType +implements org.jvnet.jaxb2_commons.lang.ToString2
+
LEMS DerivedParamter element + +

Java class for DerivedParameter complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="DerivedParameter">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}NamedDimensionalType">
+       <attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      DerivedParameter

      +
      public DerivedParameter()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class NamedDimensionalType
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class NamedDimensionalType
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class NamedDimensionalType
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/DerivedVariable.html b/org/neuroml/model/DerivedVariable.html new file mode 100644 index 00000000..2d06644e --- /dev/null +++ b/org/neuroml/model/DerivedVariable.html @@ -0,0 +1,342 @@ + + + + +DerivedVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class DerivedVariable

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalVariable +
org.neuroml.model.DerivedVariable
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class DerivedVariable +extends NamedDimensionalVariable +implements org.jvnet.jaxb2_commons.lang.ToString2
+
LEMS ComponentType for DerivedVariable + +

Java class for DerivedVariable complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="DerivedVariable">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}NamedDimensionalVariable">
+       <attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="select" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    • +
      +

      select

      +
      protected String select
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      DerivedVariable

      +
      public DerivedVariable()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSelect

      +
      public String getSelect()
      +
      Gets the value of the select property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSelect

      +
      public void setSelect(String value)
      +
      Sets the value of the select property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class NamedDimensionalVariable
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class NamedDimensionalVariable
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class NamedDimensionalVariable
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/DistalDetails.html b/org/neuroml/model/DistalDetails.html new file mode 100644 index 00000000..90a7c8eb --- /dev/null +++ b/org/neuroml/model/DistalDetails.html @@ -0,0 +1,281 @@ + + + + +DistalDetails (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class DistalDetails

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.DistalDetails
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class DistalDetails +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
What to do at the distal point when creating an inhomogeneous parameter + + +

Java class for DistalDetails complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="DistalDetails">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="normalizationEnd" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      normalizationEnd

      +
      protected double normalizationEnd
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      DistalDetails

      +
      public DistalDetails()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNormalizationEnd

      +
      public double getNormalizationEnd()
      +
      Gets the value of the normalizationEnd property.
      +
      +
      • +
    • +
      +

      setNormalizationEnd

      +
      public void setNormalizationEnd(double value)
      +
      Sets the value of the normalizationEnd property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/DoubleSynapse.html b/org/neuroml/model/DoubleSynapse.html new file mode 100644 index 00000000..87e3810c --- /dev/null +++ b/org/neuroml/model/DoubleSynapse.html @@ -0,0 +1,449 @@ + + + + +DoubleSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class DoubleSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse +
org.neuroml.model.DoubleSynapse
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class DoubleSynapse +extends BaseVoltageDepSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Synapse consisting of two independent synaptic mechanisms ( e. g. AMPA-R and NMDA-R ), which can be easily colocated in connections + + +

Java class for DoubleSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="DoubleSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseVoltageDepSynapse">
+       <attribute name="synapse1" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="synapse2" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="synapse1Path" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="synapse2Path" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      synapse1

      +
      protected String synapse1
      +
      +
      • +
    • +
      +

      synapse2

      +
      protected String synapse2
      +
      +
      • +
    • +
      +

      synapse1Path

      +
      protected String synapse1Path
      +
      +
      • +
    • +
      +

      synapse2Path

      +
      protected String synapse2Path
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      DoubleSynapse

      +
      public DoubleSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSynapse1

      +
      public String getSynapse1()
      +
      Gets the value of the synapse1 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse1

      +
      public void setSynapse1(String value)
      +
      Sets the value of the synapse1 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSynapse2

      +
      public String getSynapse2()
      +
      Gets the value of the synapse2 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse2

      +
      public void setSynapse2(String value)
      +
      Sets the value of the synapse2 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSynapse1Path

      +
      public String getSynapse1Path()
      +
      Gets the value of the synapse1Path property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse1Path

      +
      public void setSynapse1Path(String value)
      +
      Sets the value of the synapse1Path property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSynapse2Path

      +
      public String getSynapse2Path()
      +
      Gets the value of the synapse2Path property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse2Path

      +
      public void setSynapse2Path(String value)
      +
      Sets the value of the synapse2Path property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseVoltageDepSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Dynamics.html b/org/neuroml/model/Dynamics.html new file mode 100644 index 00000000..355adacf --- /dev/null +++ b/org/neuroml/model/Dynamics.html @@ -0,0 +1,559 @@ + + + + +Dynamics (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Dynamics

+
+
java.lang.Object +
org.neuroml.model.Dynamics
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Dynamics +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+
LEMS ComponentType for Dynamics + +

Java class for Dynamics complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Dynamics">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <sequence>
+         <element name="StateVariable" type="{http://www.neuroml.org/schema/neuroml2}StateVariable" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="DerivedVariable" type="{http://www.neuroml.org/schema/neuroml2}DerivedVariable" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="ConditionalDerivedVariable" type="{http://www.neuroml.org/schema/neuroml2}ConditionalDerivedVariable" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="TimeDerivative" type="{http://www.neuroml.org/schema/neuroml2}TimeDerivative" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="OnStart" type="{http://www.neuroml.org/schema/neuroml2}OnStart" minOccurs="0"/>
+         <element name="OnEvent" type="{http://www.neuroml.org/schema/neuroml2}OnEvent" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="OnCondition" type="{http://www.neuroml.org/schema/neuroml2}OnCondition" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="Regime" type="{http://www.neuroml.org/schema/neuroml2}Regime" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Dynamics

      +
      public Dynamics()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getStateVariable

      +
      public List<StateVariable> getStateVariable()
      +
      Gets the value of the stateVariable property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the stateVariable property. + +

      + For example, to add a new item, do as follows: + 

      +    getStateVariable().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + StateVariable

      +
      +
      • +
    • +
      +

      getDerivedVariable

      +
      public List<DerivedVariable> getDerivedVariable()
      +
      Gets the value of the derivedVariable property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the derivedVariable property. + +

      + For example, to add a new item, do as follows: + 

      +    getDerivedVariable().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + DerivedVariable

      +
      +
      • +
    • +
      +

      getConditionalDerivedVariable

      +
      public List<ConditionalDerivedVariable> getConditionalDerivedVariable()
      +
      Gets the value of the conditionalDerivedVariable property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the conditionalDerivedVariable property. + +

      + For example, to add a new item, do as follows: + 

      +    getConditionalDerivedVariable().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ConditionalDerivedVariable

      +
      +
      • +
    • +
      +

      getTimeDerivative

      +
      public List<TimeDerivative> getTimeDerivative()
      +
      Gets the value of the timeDerivative property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the timeDerivative property. + +

      + For example, to add a new item, do as follows: + 

      +    getTimeDerivative().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + TimeDerivative

      +
      +
      • +
    • +
      +

      getOnStart

      +
      public OnStart getOnStart()
      +
      Gets the value of the onStart property.
      +
      +
      Returns:
      +
      possible object is + OnStart
      +
      +
      +
      • +
    • +
      +

      setOnStart

      +
      public void setOnStart(OnStart value)
      +
      Sets the value of the onStart property.
      +
      +
      Parameters:
      +
      value - allowed object is + OnStart
      +
      +
      +
      • +
    • +
      +

      getOnEvent

      +
      public List<OnEvent> getOnEvent()
      +
      Gets the value of the onEvent property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the onEvent property. + +

      + For example, to add a new item, do as follows: + 

      +    getOnEvent().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + OnEvent

      +
      +
      • +
    • +
      +

      getOnCondition

      +
      public List<OnCondition> getOnCondition()
      +
      Gets the value of the onCondition property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the onCondition property. + +

      + For example, to add a new item, do as follows: + 

      +    getOnCondition().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + OnCondition

      +
      +
      • +
    • +
      +

      getRegime

      +
      public List<Regime> getRegime()
      +
      Gets the value of the regime property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the regime property. + +

      + For example, to add a new item, do as follows: + 

      +    getRegime().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Regime

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/EIFCondAlphaIsfaIsta.html b/org/neuroml/model/EIFCondAlphaIsfaIsta.html new file mode 100644 index 00000000..12821c44 --- /dev/null +++ b/org/neuroml/model/EIFCondAlphaIsfaIsta.html @@ -0,0 +1,325 @@ + + + + +EIFCondAlphaIsfaIsta (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class EIFCondAlphaIsfaIsta

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.BasePyNNIaFCell +
org.neuroml.model.BasePyNNIaFCondCell +
org.neuroml.model.EIFCondExpIsfaIsta +
org.neuroml.model.EIFCondAlphaIsfaIsta
+
+
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class EIFCondAlphaIsfaIsta +extends EIFCondExpIsfaIsta +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for EIF_cond_alpha_isfa_ista complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="EIF_cond_alpha_isfa_ista">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}EIF_cond_exp_isfa_ista">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      EIFCondAlphaIsfaIsta

      +
      public EIFCondAlphaIsfaIsta()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class EIFCondExpIsfaIsta
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class EIFCondExpIsfaIsta
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class EIFCondExpIsfaIsta
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/EIFCondExpIsfaIsta.html b/org/neuroml/model/EIFCondExpIsfaIsta.html new file mode 100644 index 00000000..d5314936 --- /dev/null +++ b/org/neuroml/model/EIFCondExpIsfaIsta.html @@ -0,0 +1,505 @@ + + + + +EIFCondExpIsfaIsta (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class EIFCondExpIsfaIsta

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.BasePyNNIaFCell +
org.neuroml.model.BasePyNNIaFCondCell +
org.neuroml.model.EIFCondExpIsfaIsta
+
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
EIFCondAlphaIsfaIsta
+
+
+
public class EIFCondExpIsfaIsta +extends BasePyNNIaFCondCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for EIF_cond_exp_isfa_ista complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="EIF_cond_exp_isfa_ista">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}basePyNNIaFCondCell">
+       <attribute name="a" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="b" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="delta_T" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="tau_w" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="v_spike" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      a

      +
      protected float a
      +
      +
      • +
    • +
      +

      b

      +
      protected float b
      +
      +
      • +
    • +
      +

      deltaT

      +
      protected float deltaT
      +
      +
      • +
    • +
      +

      tauW

      +
      protected float tauW
      +
      +
      • +
    • +
      +

      vSpike

      +
      protected float vSpike
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      EIFCondExpIsfaIsta

      +
      public EIFCondExpIsfaIsta()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getA

      +
      public float getA()
      +
      Gets the value of the a property.
      +
      +
      • +
    • +
      +

      setA

      +
      public void setA(float value)
      +
      Sets the value of the a property.
      +
      +
      • +
    • +
      +

      getB

      +
      public float getB()
      +
      Gets the value of the b property.
      +
      +
      • +
    • +
      +

      setB

      +
      public void setB(float value)
      +
      Sets the value of the b property.
      +
      +
      • +
    • +
      +

      getDeltaT

      +
      public float getDeltaT()
      +
      Gets the value of the deltaT property.
      +
      +
      • +
    • +
      +

      setDeltaT

      +
      public void setDeltaT(float value)
      +
      Sets the value of the deltaT property.
      +
      +
      • +
    • +
      +

      getTauW

      +
      public float getTauW()
      +
      Gets the value of the tauW property.
      +
      +
      • +
    • +
      +

      setTauW

      +
      public void setTauW(float value)
      +
      Sets the value of the tauW property.
      +
      +
      • +
    • +
      +

      getVSpike

      +
      public float getVSpike()
      +
      Gets the value of the vSpike property.
      +
      +
      • +
    • +
      +

      setVSpike

      +
      public void setVSpike(float value)
      +
      Sets the value of the vSpike property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ElectricalConnection.html b/org/neuroml/model/ElectricalConnection.html new file mode 100644 index 00000000..882e7188 --- /dev/null +++ b/org/neuroml/model/ElectricalConnection.html @@ -0,0 +1,319 @@ + + + + +ElectricalConnection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ElectricalConnection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionNewFormat +
org.neuroml.model.ElectricalConnection
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ElectricalConnectionInstance
+
+
+
public class ElectricalConnection +extends BaseConnectionNewFormat +implements org.jvnet.jaxb2_commons.lang.ToString2
+
To enable connections between populations through gap junctions. + + +

Java class for ElectricalConnection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ElectricalConnection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConnectionNewFormat">
+       <attribute name="synapse" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      synapse

      +
      protected String synapse
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ElectricalConnection

      +
      public ElectricalConnection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSynapse

      +
      public String getSynapse()
      +
      Gets the value of the synapse property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse

      +
      public void setSynapse(String value)
      +
      Sets the value of the synapse property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConnectionNewFormat
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConnectionNewFormat
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConnectionNewFormat
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ElectricalConnectionInstance.html b/org/neuroml/model/ElectricalConnectionInstance.html new file mode 100644 index 00000000..f8f84880 --- /dev/null +++ b/org/neuroml/model/ElectricalConnectionInstance.html @@ -0,0 +1,269 @@ + + + + +ElectricalConnectionInstance (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ElectricalConnectionInstance

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionNewFormat +
org.neuroml.model.ElectricalConnection +
org.neuroml.model.ElectricalConnectionInstance
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ElectricalConnectionInstanceW
+
+
+
public class ElectricalConnectionInstance +extends ElectricalConnection +implements org.jvnet.jaxb2_commons.lang.ToString2
+
To enable connections between populations through gap junctions. Populations need to be of type **populationList** and contain **instance** and **location** elements. + + +

Java class for ElectricalConnectionInstance complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ElectricalConnectionInstance">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}ElectricalConnection">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ElectricalConnectionInstance

      +
      public ElectricalConnectionInstance()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class ElectricalConnection
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class ElectricalConnection
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class ElectricalConnection
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ElectricalConnectionInstanceW.html b/org/neuroml/model/ElectricalConnectionInstanceW.html new file mode 100644 index 00000000..489f3b61 --- /dev/null +++ b/org/neuroml/model/ElectricalConnectionInstanceW.html @@ -0,0 +1,319 @@ + + + + +ElectricalConnectionInstanceW (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ElectricalConnectionInstanceW

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.BaseConnection +
org.neuroml.model.BaseConnectionNewFormat +
org.neuroml.model.ElectricalConnection +
org.neuroml.model.ElectricalConnectionInstance +
org.neuroml.model.ElectricalConnectionInstanceW
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ElectricalConnectionInstanceW +extends ElectricalConnectionInstance +implements org.jvnet.jaxb2_commons.lang.ToString2
+
To enable connections between populations through gap junctions. Populations need to be of type **populationList** and contain **instance** and **location** elements. Includes setting of **weight** for the connection + \n + :param weight: + :type weight: none + + + +

Java class for ElectricalConnectionInstanceW complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ElectricalConnectionInstanceW">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}ElectricalConnectionInstance">
+       <attribute name="weight" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      weight

      +
      protected float weight
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ElectricalConnectionInstanceW

      +
      public ElectricalConnectionInstanceW()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getWeight

      +
      public float getWeight()
      +
      Gets the value of the weight property.
      +
      +
      • +
    • +
      +

      setWeight

      +
      public void setWeight(float value)
      +
      Sets the value of the weight property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class ElectricalConnectionInstance
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class ElectricalConnectionInstance
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class ElectricalConnectionInstance
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ElectricalProjection.html b/org/neuroml/model/ElectricalProjection.html new file mode 100644 index 00000000..565978d3 --- /dev/null +++ b/org/neuroml/model/ElectricalProjection.html @@ -0,0 +1,382 @@ + + + + +ElectricalProjection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ElectricalProjection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.BaseProjection +
org.neuroml.model.ElectricalProjection
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ElectricalProjection +extends BaseProjection +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions. + + +

Java class for ElectricalProjection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ElectricalProjection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseProjection">
+       <sequence>
+         <element name="electricalConnection" type="{http://www.neuroml.org/schema/neuroml2}ElectricalConnection" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="electricalConnectionInstance" type="{http://www.neuroml.org/schema/neuroml2}ElectricalConnectionInstance" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="electricalConnectionInstanceW" type="{http://www.neuroml.org/schema/neuroml2}ElectricalConnectionInstanceW" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ElectricalProjection

      +
      public ElectricalProjection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getElectricalConnection

      +
      public List<ElectricalConnection> getElectricalConnection()
      +
      Gets the value of the electricalConnection property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the electricalConnection property. + +

      + For example, to add a new item, do as follows: + 

      +    getElectricalConnection().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ElectricalConnection

      +
      +
      • +
    • +
      +

      getElectricalConnectionInstance

      +
      public List<ElectricalConnectionInstance> getElectricalConnectionInstance()
      +
      Gets the value of the electricalConnectionInstance property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the electricalConnectionInstance property. + +

      + For example, to add a new item, do as follows: + 

      +    getElectricalConnectionInstance().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ElectricalConnectionInstance

      +
      +
      • +
    • +
      +

      getElectricalConnectionInstanceW

      +
      public List<ElectricalConnectionInstanceW> getElectricalConnectionInstanceW()
      +
      Gets the value of the electricalConnectionInstanceW property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the electricalConnectionInstanceW property. + +

      + For example, to add a new item, do as follows: + 

      +    getElectricalConnectionInstanceW().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ElectricalConnectionInstanceW

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseProjection
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseProjection
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseProjection
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/EventOut.html b/org/neuroml/model/EventOut.html new file mode 100644 index 00000000..15b9477f --- /dev/null +++ b/org/neuroml/model/EventOut.html @@ -0,0 +1,282 @@ + + + + +EventOut (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class EventOut

+
+
java.lang.Object +
org.neuroml.model.EventOut
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class EventOut +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for EventOut complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="EventOut">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <attribute name="port" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      port

      +
      protected String port
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      EventOut

      +
      public EventOut()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPort

      +
      public String getPort()
      +
      Gets the value of the port property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPort

      +
      public void setPort(String value)
      +
      Sets the value of the port property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ExpCondSynapse.html b/org/neuroml/model/ExpCondSynapse.html new file mode 100644 index 00000000..fcf428fd --- /dev/null +++ b/org/neuroml/model/ExpCondSynapse.html @@ -0,0 +1,319 @@ + + + + +ExpCondSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ExpCondSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BasePynnSynapse +
org.neuroml.model.ExpCondSynapse
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ExpCondSynapse +extends BasePynnSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none + + + +

Java class for ExpCondSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ExpCondSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BasePynnSynapse">
+       <attribute name="e_rev" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      eRev

      +
      protected float eRev
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ExpCondSynapse

      +
      public ExpCondSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getERev

      +
      public float getERev()
      +
      Gets the value of the eRev property.
      +
      +
      • +
    • +
      +

      setERev

      +
      public void setERev(float value)
      +
      Sets the value of the eRev property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePynnSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePynnSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePynnSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ExpCurrSynapse.html b/org/neuroml/model/ExpCurrSynapse.html new file mode 100644 index 00000000..b1957e66 --- /dev/null +++ b/org/neuroml/model/ExpCurrSynapse.html @@ -0,0 +1,269 @@ + + + + +ExpCurrSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ExpCurrSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BasePynnSynapse +
org.neuroml.model.ExpCurrSynapse
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ExpCurrSynapse +extends BasePynnSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none + + + +

Java class for ExpCurrSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ExpCurrSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BasePynnSynapse">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ExpCurrSynapse

      +
      public ExpCurrSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePynnSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePynnSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePynnSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ExpOneSynapse.html b/org/neuroml/model/ExpOneSynapse.html new file mode 100644 index 00000000..95db8c9d --- /dev/null +++ b/org/neuroml/model/ExpOneSynapse.html @@ -0,0 +1,333 @@ + + + + +ExpOneSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ExpOneSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse +
org.neuroml.model.BaseConductanceBasedSynapse +
org.neuroml.model.ExpOneSynapse
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ExpOneSynapse +extends BaseConductanceBasedSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage + + + +

Java class for ExpOneSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ExpOneSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConductanceBasedSynapse">
+       <attribute name="tauDecay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      tauDecay

      +
      protected String tauDecay
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ExpOneSynapse

      +
      public ExpOneSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTauDecay

      +
      public String getTauDecay()
      +
      Gets the value of the tauDecay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauDecay

      +
      public void setTauDecay(String value)
      +
      Sets the value of the tauDecay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ExpThreeSynapse.html b/org/neuroml/model/ExpThreeSynapse.html new file mode 100644 index 00000000..22382ec4 --- /dev/null +++ b/org/neuroml/model/ExpThreeSynapse.html @@ -0,0 +1,427 @@ + + + + +ExpThreeSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ExpThreeSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse +
org.neuroml.model.BaseConductanceBasedSynapseTwo +
org.neuroml.model.ExpThreeSynapse
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ExpThreeSynapse +extends BaseConductanceBasedSynapseTwo +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time. + \n + :param tauRise: + :type tauRise: time + :param tauDecay1: + :type tauDecay1: time + :param tauDecay2: + :type tauDecay2: time + :param gbase1: Baseline conductance 1 + :type gbase1: conductance + :param gbase2: Baseline conductance 2 + :type gbase2: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage + + + +

Java class for ExpThreeSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ExpThreeSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConductanceBasedSynapseTwo">
+       <attribute name="tauDecay1" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="tauDecay2" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="tauRise" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      tauDecay1

      +
      protected String tauDecay1
      +
      +
      • +
    • +
      +

      tauDecay2

      +
      protected String tauDecay2
      +
      +
      • +
    • +
      +

      tauRise

      +
      protected String tauRise
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ExpThreeSynapse

      +
      public ExpThreeSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTauDecay1

      +
      public String getTauDecay1()
      +
      Gets the value of the tauDecay1 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauDecay1

      +
      public void setTauDecay1(String value)
      +
      Sets the value of the tauDecay1 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTauDecay2

      +
      public String getTauDecay2()
      +
      Gets the value of the tauDecay2 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauDecay2

      +
      public void setTauDecay2(String value)
      +
      Sets the value of the tauDecay2 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTauRise

      +
      public String getTauRise()
      +
      Gets the value of the tauRise property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauRise

      +
      public void setTauRise(String value)
      +
      Sets the value of the tauRise property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConductanceBasedSynapseTwo
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConductanceBasedSynapseTwo
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConductanceBasedSynapseTwo
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ExpTwoSynapse.html b/org/neuroml/model/ExpTwoSynapse.html new file mode 100644 index 00000000..6b35b386 --- /dev/null +++ b/org/neuroml/model/ExpTwoSynapse.html @@ -0,0 +1,383 @@ + + + + +ExpTwoSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ExpTwoSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.BaseVoltageDepSynapse +
org.neuroml.model.BaseConductanceBasedSynapse +
org.neuroml.model.ExpTwoSynapse
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BlockingPlasticSynapse
+
+
+
public class ExpTwoSynapse +extends BaseConductanceBasedSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage + + + +

Java class for ExpTwoSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ExpTwoSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseConductanceBasedSynapse">
+       <attribute name="tauDecay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="tauRise" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      tauDecay

      +
      protected String tauDecay
      +
      +
      • +
    • +
      +

      tauRise

      +
      protected String tauRise
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ExpTwoSynapse

      +
      public ExpTwoSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTauDecay

      +
      public String getTauDecay()
      +
      Gets the value of the tauDecay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauDecay

      +
      public void setTauDecay(String value)
      +
      Sets the value of the tauDecay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTauRise

      +
      public String getTauRise()
      +
      Gets the value of the tauRise property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauRise

      +
      public void setTauRise(String value)
      +
      Sets the value of the tauRise property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseConductanceBasedSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ExplicitInput.html b/org/neuroml/model/ExplicitInput.html new file mode 100644 index 00000000..bb27faff --- /dev/null +++ b/org/neuroml/model/ExplicitInput.html @@ -0,0 +1,379 @@ + + + + +ExplicitInput (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ExplicitInput

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.ExplicitInput
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ExplicitInput +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
An explicit input ( anything which extends **basePointCurrent** ) to a target cell in a population + + +

Java class for ExplicitInput complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ExplicitInput">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="target" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2PopulationReferencePath" />
+       <attribute name="input" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="destination" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      target

      +
      protected String target
      +
      +
      • +
    • +
      +

      input

      +
      protected String input
      +
      +
      • +
    • +
      +

      destination

      +
      protected String destination
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ExplicitInput

      +
      public ExplicitInput()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTarget

      +
      public String getTarget()
      +
      Gets the value of the target property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTarget

      +
      public void setTarget(String value)
      +
      Sets the value of the target property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getInput

      +
      public String getInput()
      +
      Gets the value of the input property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInput

      +
      public void setInput(String value)
      +
      Sets the value of the input property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDestination

      +
      public String getDestination()
      +
      Gets the value of the destination property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDestination

      +
      public void setDestination(String value)
      +
      Sets the value of the destination property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Exposure.html b/org/neuroml/model/Exposure.html new file mode 100644 index 00000000..dd3c2d97 --- /dev/null +++ b/org/neuroml/model/Exposure.html @@ -0,0 +1,378 @@ + + + + +Exposure (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Exposure

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Exposure
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Exposure +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
LEMS Exposure (ComponentType property) + +

Java class for Exposure complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Exposure">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="dimension" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      name

      +
      protected String name
      +
      +
      • +
    • +
      +

      dimension

      +
      protected String dimension
      +
      +
      • +
    • +
      +

      description

      +
      protected String description
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Exposure

      +
      public Exposure()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getName

      +
      public String getName()
      +
      Gets the value of the name property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setName

      +
      public void setName(String value)
      +
      Sets the value of the name property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDimension

      +
      public String getDimension()
      +
      Gets the value of the dimension property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDimension

      +
      public void setDimension(String value)
      +
      Sets the value of the dimension property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDescription

      +
      public String getDescription()
      +
      Gets the value of the description property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDescription

      +
      public void setDescription(String value)
      +
      Sets the value of the description property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ExtracellularProperties.html b/org/neuroml/model/ExtracellularProperties.html new file mode 100644 index 00000000..8493115b --- /dev/null +++ b/org/neuroml/model/ExtracellularProperties.html @@ -0,0 +1,293 @@ + + + + +ExtracellularProperties (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ExtracellularProperties

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ExtracellularProperties
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ExtracellularProperties +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for ExtracellularProperties complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ExtracellularProperties">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="species" type="{http://www.neuroml.org/schema/neuroml2}Species" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ExtracellularProperties

      +
      public ExtracellularProperties()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSpecies

      +
      public List<Species> getSpecies()
      +
      Gets the value of the species property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the species property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpecies().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Species

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ExtracellularPropertiesLocal.html b/org/neuroml/model/ExtracellularPropertiesLocal.html new file mode 100644 index 00000000..dc09d487 --- /dev/null +++ b/org/neuroml/model/ExtracellularPropertiesLocal.html @@ -0,0 +1,293 @@ + + + + +ExtracellularPropertiesLocal (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ExtracellularPropertiesLocal

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ExtracellularPropertiesLocal
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ExtracellularPropertiesLocal +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for ExtracellularPropertiesLocal complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ExtracellularPropertiesLocal">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="species" type="{http://www.neuroml.org/schema/neuroml2}Species" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ExtracellularPropertiesLocal

      +
      public ExtracellularPropertiesLocal()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSpecies

      +
      public List<Species> getSpecies()
      +
      Gets the value of the species property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the species property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpecies().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Species

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/FitzHughNagumo1969Cell.html b/org/neuroml/model/FitzHughNagumo1969Cell.html new file mode 100644 index 00000000..a2239eb4 --- /dev/null +++ b/org/neuroml/model/FitzHughNagumo1969Cell.html @@ -0,0 +1,549 @@ + + + + +FitzHughNagumo1969Cell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class FitzHughNagumo1969Cell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.FitzHughNagumo1969Cell
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class FitzHughNagumo1969Cell +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons. This system was suggested by FitzHugh ( FitzHugh R. [1961]: Impulses and physiological states in theoretical models of nerve membrane. Biophysical J. 1:445-466 ), who called it " Bonhoeffer-van der Pol model ", and the equivalent circuit by Nagumo et al. ( Nagumo J. , Arimoto S. , and Yoshizawa S. [1962] An active pulse transmission line simulating nerve axon. Proc IRE. 50:2061-2070. 1962 ). This version corresponds to the one described in FitzHugh R. [1969]: Mathematical models of excitation and propagation in nerve. Chapter 1 ( pp. 1-85 in H. P. Schwan, ed. Biological Engineering, McGraw-Hill Book Co. , N. Y. ) + \n + :param a: + :type a: none + :param b: + :type b: none + :param I: plays the role of an external injected current + :type I: none + :param phi: + :type phi: none + :param V0: + :type V0: none + :param W0: + :type W0: none + + + +

Java class for FitzHughNagumo1969Cell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="FitzHughNagumo1969Cell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <attribute name="a" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="b" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="I" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="phi" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="V0" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="W0" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      a

      +
      protected String a
      +
      +
      • +
    • +
      +

      b

      +
      protected String b
      +
      +
      • +
    • +
      +

      i

      +
      protected String i
      +
      +
      • +
    • +
      +

      phi

      +
      protected String phi
      +
      +
      • +
    • +
      +

      v0

      +
      protected String v0
      +
      +
      • +
    • +
      +

      w0

      +
      protected String w0
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      FitzHughNagumo1969Cell

      +
      public FitzHughNagumo1969Cell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getA

      +
      public String getA()
      +
      Gets the value of the a property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setA

      +
      public void setA(String value)
      +
      Sets the value of the a property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getB

      +
      public String getB()
      +
      Gets the value of the b property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setB

      +
      public void setB(String value)
      +
      Sets the value of the b property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getI

      +
      public String getI()
      +
      Gets the value of the i property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setI

      +
      public void setI(String value)
      +
      Sets the value of the i property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPhi

      +
      public String getPhi()
      +
      Gets the value of the phi property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPhi

      +
      public void setPhi(String value)
      +
      Sets the value of the phi property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getV0

      +
      public String getV0()
      +
      Gets the value of the v0 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setV0

      +
      public void setV0(String value)
      +
      Sets the value of the v0 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getW0

      +
      public String getW0()
      +
      Gets the value of the w0 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setW0

      +
      public void setW0(String value)
      +
      Sets the value of the w0 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/FitzHughNagumoCell.html b/org/neuroml/model/FitzHughNagumoCell.html new file mode 100644 index 00000000..03c51ef7 --- /dev/null +++ b/org/neuroml/model/FitzHughNagumoCell.html @@ -0,0 +1,319 @@ + + + + +FitzHughNagumoCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class FitzHughNagumoCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.FitzHughNagumoCell
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class FitzHughNagumoCell +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Simple dimensionless model of spiking cell from FitzHugh and Nagumo. Superseded by **fitzHughNagumo1969Cell** ( See https://github.com/NeuroML/NeuroML2/issues/42 ) + \n + :param I: + :type I: none + + + +

Java class for FitzHughNagumoCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="FitzHughNagumoCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <attribute name="I" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      i

      +
      protected String i
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      FitzHughNagumoCell

      +
      public FitzHughNagumoCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getI

      +
      public String getI()
      +
      Gets the value of the i property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setI

      +
      public void setI(String value)
      +
      Sets the value of the i property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/FixedFactorConcentrationModel.html b/org/neuroml/model/FixedFactorConcentrationModel.html new file mode 100644 index 00000000..79745c6e --- /dev/null +++ b/org/neuroml/model/FixedFactorConcentrationModel.html @@ -0,0 +1,447 @@ + + + + +FixedFactorConcentrationModel (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class FixedFactorConcentrationModel

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.FixedFactorConcentrationModel
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class FixedFactorConcentrationModel +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change. + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param rho: + :type rho: rho_factor + + + +

Java class for FixedFactorConcentrationModel complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="FixedFactorConcentrationModel">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="ion" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="restingConc" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_concentration" />
+       <attribute name="decayConstant" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="rho" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_rhoFactor" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    • +
      +

      restingConc

      +
      protected String restingConc
      +
      +
      • +
    • +
      +

      decayConstant

      +
      protected String decayConstant
      +
      +
      • +
    • +
      +

      rho

      +
      protected String rho
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      FixedFactorConcentrationModel

      +
      public FixedFactorConcentrationModel()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getRestingConc

      +
      public String getRestingConc()
      +
      Gets the value of the restingConc property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRestingConc

      +
      public void setRestingConc(String value)
      +
      Sets the value of the restingConc property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDecayConstant

      +
      public String getDecayConstant()
      +
      Gets the value of the decayConstant property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDecayConstant

      +
      public void setDecayConstant(String value)
      +
      Sets the value of the decayConstant property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getRho

      +
      public String getRho()
      +
      Gets the value of the rho property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRho

      +
      public void setRho(String value)
      +
      Sets the value of the rho property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ForwardTransition.html b/org/neuroml/model/ForwardTransition.html new file mode 100644 index 00000000..5b2b213d --- /dev/null +++ b/org/neuroml/model/ForwardTransition.html @@ -0,0 +1,384 @@ + + + + +ForwardTransition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ForwardTransition

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ForwardTransition
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ForwardTransition +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e. g. **HHExpRate** , **HHSigmoidRate** , **HHExpLinearRate** + + +

Java class for ForwardTransition complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ForwardTransition">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <any processContents='skip' maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="from" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="to" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      any

      +
      protected List<Element> any
      +
      +
      • +
    • +
      +

      from

      +
      protected String from
      +
      +
      • +
    • +
      +

      to

      +
      protected String to
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ForwardTransition

      +
      public ForwardTransition()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAny

      +
      public List<Element> getAny()
      +
      Gets the value of the any property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the any property. + +

      + For example, to add a new item, do as follows: + 

      +    getAny().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Element

      +
      +
      • +
    • +
      +

      getFrom

      +
      public String getFrom()
      +
      Gets the value of the from property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setFrom

      +
      public void setFrom(String value)
      +
      Sets the value of the from property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTo

      +
      public String getTo()
      +
      Gets the value of the to property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTo

      +
      public void setTo(String value)
      +
      Sets the value of the to property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GapJunction.html b/org/neuroml/model/GapJunction.html new file mode 100644 index 00000000..6a42fccd --- /dev/null +++ b/org/neuroml/model/GapJunction.html @@ -0,0 +1,319 @@ + + + + +GapJunction (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GapJunction

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.GapJunction
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GapJunction +extends BaseSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance + + + +

Java class for GapJunction complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GapJunction">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseSynapse">
+       <attribute name="conductance" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      conductance

      +
      protected String conductance
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GapJunction

      +
      public GapJunction()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getConductance

      +
      public String getConductance()
      +
      Gets the value of the conductance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setConductance

      +
      public void setConductance(String value)
      +
      Sets the value of the conductance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateFractional.html b/org/neuroml/model/GateFractional.html new file mode 100644 index 00000000..a7af6966 --- /dev/null +++ b/org/neuroml/model/GateFractional.html @@ -0,0 +1,432 @@ + + + + +GateFractional (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateFractional

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateFractional
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateFractional +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Gate composed of subgates contributing with fractional conductance + \n + :param instances: + :type instances: none + + + +

Java class for GateFractional complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateFractional">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="subGate" type="{http://www.neuroml.org/schema/neuroml2}GateFractionalSubgate" maxOccurs="unbounded"/>
+       </sequence>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateFractional

      +
      public GateFractional()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getSubGate

      +
      public List<GateFractionalSubgate> getSubGate()
      +
      Gets the value of the subGate property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the subGate property. + +

      + For example, to add a new item, do as follows: + 

      +    getSubGate().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateFractionalSubgate

      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateFractionalSubgate.html b/org/neuroml/model/GateFractionalSubgate.html new file mode 100644 index 00000000..09d957f7 --- /dev/null +++ b/org/neuroml/model/GateFractionalSubgate.html @@ -0,0 +1,474 @@ + + + + +GateFractionalSubgate (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateFractionalSubgate

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateFractionalSubgate
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateFractionalSubgate +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for GateFractionalSubgate complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateFractionalSubgate">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <all>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="steadyState" type="{http://www.neuroml.org/schema/neuroml2}HHVariable"/>
+         <element name="timeCourse" type="{http://www.neuroml.org/schema/neuroml2}HHTime"/>
+       </all>
+       <attribute name="fractionalConductance" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      q10Settings

      +
      protected Q10Settings q10Settings
      +
      +
      • +
    • +
      +

      steadyState

      +
      protected HHVariable steadyState
      +
      +
      • +
    • +
      +

      timeCourse

      +
      protected HHTime timeCourse
      +
      +
      • +
    • +
      +

      fractionalConductance

      +
      protected String fractionalConductance
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateFractionalSubgate

      +
      public GateFractionalSubgate()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getSteadyState

      +
      public HHVariable getSteadyState()
      +
      Gets the value of the steadyState property.
      +
      +
      Returns:
      +
      possible object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      setSteadyState

      +
      public void setSteadyState(HHVariable value)
      +
      Sets the value of the steadyState property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      getTimeCourse

      +
      public HHTime getTimeCourse()
      +
      Gets the value of the timeCourse property.
      +
      +
      Returns:
      +
      possible object is + HHTime
      +
      +
      +
      • +
    • +
      +

      setTimeCourse

      +
      public void setTimeCourse(HHTime value)
      +
      Sets the value of the timeCourse property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHTime
      +
      +
      +
      • +
    • +
      +

      getFractionalConductance

      +
      public String getFractionalConductance()
      +
      Gets the value of the fractionalConductance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setFractionalConductance

      +
      public void setFractionalConductance(String value)
      +
      Sets the value of the fractionalConductance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateHHInstantaneous.html b/org/neuroml/model/GateHHInstantaneous.html new file mode 100644 index 00000000..9080e7a6 --- /dev/null +++ b/org/neuroml/model/GateHHInstantaneous.html @@ -0,0 +1,393 @@ + + + + +GateHHInstantaneous (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateHHInstantaneous

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateHHInstantaneous
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateHHInstantaneous +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value + \n + :param instances: + :type instances: none + + + +

Java class for GateHHInstantaneous complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateHHInstantaneous">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <all>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="steadyState" type="{http://www.neuroml.org/schema/neuroml2}HHVariable"/>
+       </all>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      steadyState

      +
      protected HHVariable steadyState
      +
      +
      • +
    • +
      +

      instances

      +
      protected Integer instances
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateHHInstantaneous

      +
      public GateHHInstantaneous()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSteadyState

      +
      public HHVariable getSteadyState()
      +
      Gets the value of the steadyState property.
      +
      +
      Returns:
      +
      possible object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      setSteadyState

      +
      public void setSteadyState(HHVariable value)
      +
      Sets the value of the steadyState property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateHHRates.html b/org/neuroml/model/GateHHRates.html new file mode 100644 index 00000000..9f53a165 --- /dev/null +++ b/org/neuroml/model/GateHHRates.html @@ -0,0 +1,481 @@ + + + + +GateHHRates (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateHHRates

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateHHRates
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateHHRates +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none + + + +

Java class for GateHHRates complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateHHRates">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <all>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="forwardRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate"/>
+         <element name="reverseRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate"/>
+       </all>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      q10Settings

      +
      protected Q10Settings q10Settings
      +
      +
      • +
    • +
      +

      forwardRate

      +
      protected HHRate forwardRate
      +
      +
      • +
    • +
      +

      reverseRate

      +
      protected HHRate reverseRate
      +
      +
      • +
    • +
      +

      instances

      +
      protected Integer instances
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateHHRates

      +
      public GateHHRates()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getForwardRate

      +
      public HHRate getForwardRate()
      +
      Gets the value of the forwardRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setForwardRate

      +
      public void setForwardRate(HHRate value)
      +
      Sets the value of the forwardRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getReverseRate

      +
      public HHRate getReverseRate()
      +
      Gets the value of the reverseRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setReverseRate

      +
      public void setReverseRate(HHRate value)
      +
      Sets the value of the reverseRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateHHRatesInf.html b/org/neuroml/model/GateHHRatesInf.html new file mode 100644 index 00000000..c2f61990 --- /dev/null +++ b/org/neuroml/model/GateHHRatesInf.html @@ -0,0 +1,525 @@ + + + + +GateHHRatesInf (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateHHRatesInf

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateHHRatesInf
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateHHRatesInf +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none + + + +

Java class for GateHHRatesInf complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateHHRatesInf">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <all>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="forwardRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate"/>
+         <element name="reverseRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate"/>
+         <element name="steadyState" type="{http://www.neuroml.org/schema/neuroml2}HHVariable"/>
+       </all>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      q10Settings

      +
      protected Q10Settings q10Settings
      +
      +
      • +
    • +
      +

      forwardRate

      +
      protected HHRate forwardRate
      +
      +
      • +
    • +
      +

      reverseRate

      +
      protected HHRate reverseRate
      +
      +
      • +
    • +
      +

      steadyState

      +
      protected HHVariable steadyState
      +
      +
      • +
    • +
      +

      instances

      +
      protected Integer instances
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateHHRatesInf

      +
      public GateHHRatesInf()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getForwardRate

      +
      public HHRate getForwardRate()
      +
      Gets the value of the forwardRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setForwardRate

      +
      public void setForwardRate(HHRate value)
      +
      Sets the value of the forwardRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getReverseRate

      +
      public HHRate getReverseRate()
      +
      Gets the value of the reverseRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setReverseRate

      +
      public void setReverseRate(HHRate value)
      +
      Sets the value of the reverseRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getSteadyState

      +
      public HHVariable getSteadyState()
      +
      Gets the value of the steadyState property.
      +
      +
      Returns:
      +
      possible object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      setSteadyState

      +
      public void setSteadyState(HHVariable value)
      +
      Sets the value of the steadyState property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateHHRatesTau.html b/org/neuroml/model/GateHHRatesTau.html new file mode 100644 index 00000000..c5bed011 --- /dev/null +++ b/org/neuroml/model/GateHHRatesTau.html @@ -0,0 +1,525 @@ + + + + +GateHHRatesTau (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateHHRatesTau

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateHHRatesTau
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateHHRatesTau +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none + + + +

Java class for GateHHRatesTau complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateHHRatesTau">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <all>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="forwardRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate"/>
+         <element name="reverseRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate"/>
+         <element name="timeCourse" type="{http://www.neuroml.org/schema/neuroml2}HHTime"/>
+       </all>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      q10Settings

      +
      protected Q10Settings q10Settings
      +
      +
      • +
    • +
      +

      forwardRate

      +
      protected HHRate forwardRate
      +
      +
      • +
    • +
      +

      reverseRate

      +
      protected HHRate reverseRate
      +
      +
      • +
    • +
      +

      timeCourse

      +
      protected HHTime timeCourse
      +
      +
      • +
    • +
      +

      instances

      +
      protected Integer instances
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateHHRatesTau

      +
      public GateHHRatesTau()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getForwardRate

      +
      public HHRate getForwardRate()
      +
      Gets the value of the forwardRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setForwardRate

      +
      public void setForwardRate(HHRate value)
      +
      Sets the value of the forwardRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getReverseRate

      +
      public HHRate getReverseRate()
      +
      Gets the value of the reverseRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setReverseRate

      +
      public void setReverseRate(HHRate value)
      +
      Sets the value of the reverseRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getTimeCourse

      +
      public HHTime getTimeCourse()
      +
      Gets the value of the timeCourse property.
      +
      +
      Returns:
      +
      possible object is + HHTime
      +
      +
      +
      • +
    • +
      +

      setTimeCourse

      +
      public void setTimeCourse(HHTime value)
      +
      Sets the value of the timeCourse property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHTime
      +
      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateHHRatesTauInf.html b/org/neuroml/model/GateHHRatesTauInf.html new file mode 100644 index 00000000..2b6b5694 --- /dev/null +++ b/org/neuroml/model/GateHHRatesTauInf.html @@ -0,0 +1,569 @@ + + + + +GateHHRatesTauInf (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateHHRatesTauInf

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateHHRatesTauInf
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateHHRatesTauInf +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none + + + +

Java class for GateHHRatesTauInf complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateHHRatesTauInf">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <all>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="forwardRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate"/>
+         <element name="reverseRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate"/>
+         <element name="timeCourse" type="{http://www.neuroml.org/schema/neuroml2}HHTime"/>
+         <element name="steadyState" type="{http://www.neuroml.org/schema/neuroml2}HHVariable"/>
+       </all>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      q10Settings

      +
      protected Q10Settings q10Settings
      +
      +
      • +
    • +
      +

      forwardRate

      +
      protected HHRate forwardRate
      +
      +
      • +
    • +
      +

      reverseRate

      +
      protected HHRate reverseRate
      +
      +
      • +
    • +
      +

      timeCourse

      +
      protected HHTime timeCourse
      +
      +
      • +
    • +
      +

      steadyState

      +
      protected HHVariable steadyState
      +
      +
      • +
    • +
      +

      instances

      +
      protected Integer instances
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateHHRatesTauInf

      +
      public GateHHRatesTauInf()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getForwardRate

      +
      public HHRate getForwardRate()
      +
      Gets the value of the forwardRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setForwardRate

      +
      public void setForwardRate(HHRate value)
      +
      Sets the value of the forwardRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getReverseRate

      +
      public HHRate getReverseRate()
      +
      Gets the value of the reverseRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setReverseRate

      +
      public void setReverseRate(HHRate value)
      +
      Sets the value of the reverseRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getTimeCourse

      +
      public HHTime getTimeCourse()
      +
      Gets the value of the timeCourse property.
      +
      +
      Returns:
      +
      possible object is + HHTime
      +
      +
      +
      • +
    • +
      +

      setTimeCourse

      +
      public void setTimeCourse(HHTime value)
      +
      Sets the value of the timeCourse property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHTime
      +
      +
      +
      • +
    • +
      +

      getSteadyState

      +
      public HHVariable getSteadyState()
      +
      Gets the value of the steadyState property.
      +
      +
      Returns:
      +
      possible object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      setSteadyState

      +
      public void setSteadyState(HHVariable value)
      +
      Sets the value of the steadyState property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateHHTauInf.html b/org/neuroml/model/GateHHTauInf.html new file mode 100644 index 00000000..3c4a8fad --- /dev/null +++ b/org/neuroml/model/GateHHTauInf.html @@ -0,0 +1,481 @@ + + + + +GateHHTauInf (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateHHTauInf

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateHHTauInf
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateHHTauInf +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none + + + +

Java class for GateHHTauInf complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateHHTauInf">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <all>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="timeCourse" type="{http://www.neuroml.org/schema/neuroml2}HHTime"/>
+         <element name="steadyState" type="{http://www.neuroml.org/schema/neuroml2}HHVariable"/>
+       </all>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      q10Settings

      +
      protected Q10Settings q10Settings
      +
      +
      • +
    • +
      +

      timeCourse

      +
      protected HHTime timeCourse
      +
      +
      • +
    • +
      +

      steadyState

      +
      protected HHVariable steadyState
      +
      +
      • +
    • +
      +

      instances

      +
      protected Integer instances
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateHHTauInf

      +
      public GateHHTauInf()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getTimeCourse

      +
      public HHTime getTimeCourse()
      +
      Gets the value of the timeCourse property.
      +
      +
      Returns:
      +
      possible object is + HHTime
      +
      +
      +
      • +
    • +
      +

      setTimeCourse

      +
      public void setTimeCourse(HHTime value)
      +
      Sets the value of the timeCourse property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHTime
      +
      +
      +
      • +
    • +
      +

      getSteadyState

      +
      public HHVariable getSteadyState()
      +
      Gets the value of the steadyState property.
      +
      +
      Returns:
      +
      possible object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      setSteadyState

      +
      public void setSteadyState(HHVariable value)
      +
      Sets the value of the steadyState property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateHHUndetermined.html b/org/neuroml/model/GateHHUndetermined.html new file mode 100644 index 00000000..de7cb55e --- /dev/null +++ b/org/neuroml/model/GateHHUndetermined.html @@ -0,0 +1,647 @@ + + + + +GateHHUndetermined (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateHHUndetermined

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateHHUndetermined
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateHHUndetermined +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc. allowed here. Which are valid should be constrained by what type is set + +

Java class for GateHHUndetermined complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateHHUndetermined">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="forwardRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate" minOccurs="0"/>
+         <element name="reverseRate" type="{http://www.neuroml.org/schema/neuroml2}HHRate" minOccurs="0"/>
+         <element name="timeCourse" type="{http://www.neuroml.org/schema/neuroml2}HHTime" minOccurs="0"/>
+         <element name="steadyState" type="{http://www.neuroml.org/schema/neuroml2}HHVariable" minOccurs="0"/>
+         <element name="subGate" type="{http://www.neuroml.org/schema/neuroml2}GateFractionalSubgate" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+       <attribute name="type" use="required" type="{http://www.neuroml.org/schema/neuroml2}gateTypes" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      q10Settings

      +
      protected Q10Settings q10Settings
      +
      +
      • +
    • +
      +

      forwardRate

      +
      protected HHRate forwardRate
      +
      +
      • +
    • +
      +

      reverseRate

      +
      protected HHRate reverseRate
      +
      +
      • +
    • +
      +

      timeCourse

      +
      protected HHTime timeCourse
      +
      +
      • +
    • +
      +

      steadyState

      +
      protected HHVariable steadyState
      +
      +
      • +
    • +
      +

      subGate

      +
      protected List<GateFractionalSubgate> subGate
      +
      +
      • +
    • +
      +

      instances

      +
      protected Integer instances
      +
      +
      • +
    • +
      +

      type

      +
      protected GateTypes type
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateHHUndetermined

      +
      public GateHHUndetermined()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getForwardRate

      +
      public HHRate getForwardRate()
      +
      Gets the value of the forwardRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setForwardRate

      +
      public void setForwardRate(HHRate value)
      +
      Sets the value of the forwardRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getReverseRate

      +
      public HHRate getReverseRate()
      +
      Gets the value of the reverseRate property.
      +
      +
      Returns:
      +
      possible object is + HHRate
      +
      +
      +
      • +
    • +
      +

      setReverseRate

      +
      public void setReverseRate(HHRate value)
      +
      Sets the value of the reverseRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHRate
      +
      +
      +
      • +
    • +
      +

      getTimeCourse

      +
      public HHTime getTimeCourse()
      +
      Gets the value of the timeCourse property.
      +
      +
      Returns:
      +
      possible object is + HHTime
      +
      +
      +
      • +
    • +
      +

      setTimeCourse

      +
      public void setTimeCourse(HHTime value)
      +
      Sets the value of the timeCourse property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHTime
      +
      +
      +
      • +
    • +
      +

      getSteadyState

      +
      public HHVariable getSteadyState()
      +
      Gets the value of the steadyState property.
      +
      +
      Returns:
      +
      possible object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      setSteadyState

      +
      public void setSteadyState(HHVariable value)
      +
      Sets the value of the steadyState property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      getSubGate

      +
      public List<GateFractionalSubgate> getSubGate()
      +
      Gets the value of the subGate property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the subGate property. + +

      + For example, to add a new item, do as follows: + 

      +    getSubGate().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateFractionalSubgate

      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getType

      +
      public GateTypes getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + GateTypes
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(GateTypes value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + GateTypes
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateKS.html b/org/neuroml/model/GateKS.html new file mode 100644 index 00000000..914be7e0 --- /dev/null +++ b/org/neuroml/model/GateKS.html @@ -0,0 +1,515 @@ + + + + +GateKS (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GateKS

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.GateKS
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GateKS +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param instances: + :type instances: none + + + +

Java class for GateKS complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GateKS">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="q10Settings" type="{http://www.neuroml.org/schema/neuroml2}Q10Settings" minOccurs="0"/>
+         <element name="closedState" type="{http://www.neuroml.org/schema/neuroml2}ClosedState" maxOccurs="unbounded"/>
+         <element name="openState" type="{http://www.neuroml.org/schema/neuroml2}OpenState" maxOccurs="unbounded"/>
+         <choice maxOccurs="unbounded">
+           <group ref="{http://www.neuroml.org/schema/neuroml2}ForwardReverseTransition"/>
+           <element name="tauInfTransition" type="{http://www.neuroml.org/schema/neuroml2}TauInfTransition"/>
+         </choice>
+       </sequence>
+       <attribute name="instances" use="required" type="{http://www.neuroml.org/schema/neuroml2}PositiveInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      q10Settings

      +
      protected Q10Settings q10Settings
      +
      +
      • +
    • +
      +

      closedState

      +
      protected List<ClosedState> closedState
      +
      +
      • +
    • +
      +

      openState

      +
      protected List<OpenState> openState
      +
      +
      • +
    • +
      +

      forwardTransitionAndReverseTransitionOrTauInfTransition

      +
      protected List<Base> forwardTransitionAndReverseTransitionOrTauInfTransition
      +
      +
      • +
    • +
      +

      instances

      +
      protected Integer instances
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GateKS

      +
      public GateKS()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Settings

      +
      public Q10Settings getQ10Settings()
      +
      Gets the value of the q10Settings property.
      +
      +
      Returns:
      +
      possible object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      setQ10Settings

      +
      public void setQ10Settings(Q10Settings value)
      +
      Sets the value of the q10Settings property.
      +
      +
      Parameters:
      +
      value - allowed object is + Q10Settings
      +
      +
      +
      • +
    • +
      +

      getClosedState

      +
      public List<ClosedState> getClosedState()
      +
      Gets the value of the closedState property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the closedState property. + +

      + For example, to add a new item, do as follows: + 

      +    getClosedState().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ClosedState

      +
      +
      • +
    • +
      +

      getOpenState

      +
      public List<OpenState> getOpenState()
      +
      Gets the value of the openState property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the openState property. + +

      + For example, to add a new item, do as follows: + 

      +    getOpenState().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + OpenState

      +
      +
      • +
    • +
      +

      getForwardTransitionAndReverseTransitionOrTauInfTransition

      +
      public List<Base> getForwardTransitionAndReverseTransitionOrTauInfTransition()
      +
      Gets the value of the forwardTransitionAndReverseTransitionOrTauInfTransition property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the forwardTransitionAndReverseTransitionOrTauInfTransition property. + +

      + For example, to add a new item, do as follows: + 

      +    getForwardTransitionAndReverseTransitionOrTauInfTransition().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ForwardTransition + ReverseTransition + TauInfTransition

      +
      +
      • +
    • +
      +

      getInstances

      +
      public Integer getInstances()
      +
      Gets the value of the instances property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInstances

      +
      public void setInstances(Integer value)
      +
      Sets the value of the instances property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GateTypes.html b/org/neuroml/model/GateTypes.html new file mode 100644 index 00000000..17773bf4 --- /dev/null +++ b/org/neuroml/model/GateTypes.html @@ -0,0 +1,306 @@ + + + + +GateTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum GateTypes

+
+
java.lang.Object +
java.lang.Enum<GateTypes> +
org.neuroml.model.GateTypes
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<GateTypes>, java.lang.constant.Constable
+
+
+
public enum GateTypes +extends Enum<GateTypes>
+

Java class for gateTypes. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="gateTypes">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="gateHHrates"/>
+     <enumeration value="gateHHratesTau"/>
+     <enumeration value="gateHHtauInf"/>
+     <enumeration value="gateHHratesInf"/>
+     <enumeration value="gateHHratesTauInf"/>
+     <enumeration value="gateHHInstantaneous"/>
+     <enumeration value="gateKS"/>
+     <enumeration value="gateFractional"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      GATE_H_HRATES

      +
      public static final GateTypes GATE_H_HRATES
      +
      +
      • +
    • +
      +

      GATE_H_HRATES_TAU

      +
      public static final GateTypes GATE_H_HRATES_TAU
      +
      +
      • +
    • +
      +

      GATE_H_HTAU_INF

      +
      public static final GateTypes GATE_H_HTAU_INF
      +
      +
      • +
    • +
      +

      GATE_H_HRATES_INF

      +
      public static final GateTypes GATE_H_HRATES_INF
      +
      +
      • +
    • +
      +

      GATE_H_HRATES_TAU_INF

      +
      public static final GateTypes GATE_H_HRATES_TAU_INF
      +
      +
      • +
    • +
      +

      GATE_HH_INSTANTANEOUS

      +
      public static final GateTypes GATE_HH_INSTANTANEOUS
      +
      +
      • +
    • +
      +

      GATE_KS

      +
      public static final GateTypes GATE_KS
      +
      +
      • +
    • +
      +

      GATE_FRACTIONAL

      +
      public static final GateTypes GATE_FRACTIONAL
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static GateTypes[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static GateTypes valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static GateTypes fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GradedSynapse.html b/org/neuroml/model/GradedSynapse.html new file mode 100644 index 00000000..17af449e --- /dev/null +++ b/org/neuroml/model/GradedSynapse.html @@ -0,0 +1,503 @@ + + + + +GradedSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GradedSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.GradedSynapse
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GradedSynapse +extends BaseSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Graded/analog synapse. Based on synapse in Methods of http://www. nature.com/neuro/journal/v7/n12/abs/nn1352.html + \n + :param conductance: + :type conductance: conductance + :param delta: Slope of the activation curve + :type delta: voltage + :param k: Rate constant for transmitter-receptor dissociation rate + :type k: per_time + :param Vth: The half-activation voltage of the synapse + :type Vth: voltage + :param erev: The reversal potential of the synapse + :type erev: voltage + + + +

Java class for GradedSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GradedSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseSynapse">
+       <attribute name="conductance" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+       <attribute name="delta" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="Vth" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="k" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_pertime" />
+       <attribute name="erev" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      conductance

      +
      protected String conductance
      +
      +
      • +
    • +
      +

      delta

      +
      protected String delta
      +
      +
      • +
    • +
      +

      vth

      +
      protected String vth
      +
      +
      • +
    • +
      +

      k

      +
      protected String k
      +
      +
      • +
    • +
      +

      erev

      +
      protected String erev
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GradedSynapse

      +
      public GradedSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getConductance

      +
      public String getConductance()
      +
      Gets the value of the conductance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setConductance

      +
      public void setConductance(String value)
      +
      Sets the value of the conductance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDelta

      +
      public String getDelta()
      +
      Gets the value of the delta property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelta

      +
      public void setDelta(String value)
      +
      Sets the value of the delta property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getVth

      +
      public String getVth()
      +
      Gets the value of the vth property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVth

      +
      public void setVth(String value)
      +
      Sets the value of the vth property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getK

      +
      public String getK()
      +
      Gets the value of the k property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setK

      +
      public void setK(String value)
      +
      Sets the value of the k property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getErev

      +
      public String getErev()
      +
      Gets the value of the erev property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setErev

      +
      public void setErev(String value)
      +
      Sets the value of the erev property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/GridLayout.html b/org/neuroml/model/GridLayout.html new file mode 100644 index 00000000..7dd278ea --- /dev/null +++ b/org/neuroml/model/GridLayout.html @@ -0,0 +1,376 @@ + + + + +GridLayout (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class GridLayout

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.GridLayout
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class GridLayout +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for GridLayout complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="GridLayout">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="xSize" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+       <attribute name="ySize" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+       <attribute name="zSize" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      GridLayout

      +
      public GridLayout()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getXSize

      +
      public BigInteger getXSize()
      +
      Gets the value of the xSize property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setXSize

      +
      public void setXSize(BigInteger value)
      +
      Sets the value of the xSize property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      getYSize

      +
      public BigInteger getYSize()
      +
      Gets the value of the ySize property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setYSize

      +
      public void setYSize(BigInteger value)
      +
      Sets the value of the ySize property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      getZSize

      +
      public BigInteger getZSize()
      +
      Gets the value of the zSize property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setZSize

      +
      public void setZSize(BigInteger value)
      +
      Sets the value of the zSize property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/HHCondExp.html b/org/neuroml/model/HHCondExp.html new file mode 100644 index 00000000..50f41851 --- /dev/null +++ b/org/neuroml/model/HHCondExp.html @@ -0,0 +1,615 @@ + + + + +HHCondExp (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class HHCondExp

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.HHCondExp
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class HHCondExp +extends BasePyNNCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub. + \n + :param gbar_K: + :type gbar_K: none + :param gbar_Na: + :type gbar_Na: none + :param g_leak: + :type g_leak: none + :param e_rev_K: + :type e_rev_K: none + :param e_rev_Na: + :type e_rev_Na: none + :param e_rev_leak: + :type e_rev_leak: none + :param v_offset: + :type v_offset: none + :param e_rev_E: + :type e_rev_E: none + :param e_rev_I: + :type e_rev_I: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for HH_cond_exp complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="HH_cond_exp">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}basePyNNCell">
+       <attribute name="v_offset" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="e_rev_E" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="e_rev_I" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="e_rev_K" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="e_rev_Na" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="e_rev_leak" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="g_leak" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="gbar_K" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="gbar_Na" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      vOffset

      +
      protected float vOffset
      +
      +
      • +
    • +
      +

      eRevE

      +
      protected float eRevE
      +
      +
      • +
    • +
      +

      eRevI

      +
      protected float eRevI
      +
      +
      • +
    • +
      +

      eRevK

      +
      protected float eRevK
      +
      +
      • +
    • +
      +

      eRevNa

      +
      protected float eRevNa
      +
      +
      • +
    • +
      +

      eRevLeak

      +
      protected float eRevLeak
      +
      +
      • +
    • +
      +

      gLeak

      +
      protected float gLeak
      +
      +
      • +
    • +
      +

      gbarK

      +
      protected float gbarK
      +
      +
      • +
    • +
      +

      gbarNa

      +
      protected float gbarNa
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      HHCondExp

      +
      public HHCondExp()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVOffset

      +
      public float getVOffset()
      +
      Gets the value of the vOffset property.
      +
      +
      • +
    • +
      +

      setVOffset

      +
      public void setVOffset(float value)
      +
      Sets the value of the vOffset property.
      +
      +
      • +
    • +
      +

      getERevE

      +
      public float getERevE()
      +
      Gets the value of the eRevE property.
      +
      +
      • +
    • +
      +

      setERevE

      +
      public void setERevE(float value)
      +
      Sets the value of the eRevE property.
      +
      +
      • +
    • +
      +

      getERevI

      +
      public float getERevI()
      +
      Gets the value of the eRevI property.
      +
      +
      • +
    • +
      +

      setERevI

      +
      public void setERevI(float value)
      +
      Sets the value of the eRevI property.
      +
      +
      • +
    • +
      +

      getERevK

      +
      public float getERevK()
      +
      Gets the value of the eRevK property.
      +
      +
      • +
    • +
      +

      setERevK

      +
      public void setERevK(float value)
      +
      Sets the value of the eRevK property.
      +
      +
      • +
    • +
      +

      getERevNa

      +
      public float getERevNa()
      +
      Gets the value of the eRevNa property.
      +
      +
      • +
    • +
      +

      setERevNa

      +
      public void setERevNa(float value)
      +
      Sets the value of the eRevNa property.
      +
      +
      • +
    • +
      +

      getERevLeak

      +
      public float getERevLeak()
      +
      Gets the value of the eRevLeak property.
      +
      +
      • +
    • +
      +

      setERevLeak

      +
      public void setERevLeak(float value)
      +
      Sets the value of the eRevLeak property.
      +
      +
      • +
    • +
      +

      getGLeak

      +
      public float getGLeak()
      +
      Gets the value of the gLeak property.
      +
      +
      • +
    • +
      +

      setGLeak

      +
      public void setGLeak(float value)
      +
      Sets the value of the gLeak property.
      +
      +
      • +
    • +
      +

      getGbarK

      +
      public float getGbarK()
      +
      Gets the value of the gbarK property.
      +
      +
      • +
    • +
      +

      setGbarK

      +
      public void setGbarK(float value)
      +
      Sets the value of the gbarK property.
      +
      +
      • +
    • +
      +

      getGbarNa

      +
      public float getGbarNa()
      +
      Gets the value of the gbarNa property.
      +
      +
      • +
    • +
      +

      setGbarNa

      +
      public void setGbarNa(float value)
      +
      Sets the value of the gbarNa property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePyNNCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePyNNCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePyNNCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/HHRate.html b/org/neuroml/model/HHRate.html new file mode 100644 index 00000000..fef0fb5d --- /dev/null +++ b/org/neuroml/model/HHRate.html @@ -0,0 +1,420 @@ + + + + +HHRate (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class HHRate

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.HHRate
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class HHRate +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for HHRate complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="HHRate">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="type" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="rate" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_pertime" />
+       <attribute name="midpoint" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="scale" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      type

      +
      protected String type
      +
      +
      • +
    • +
      +

      rate

      +
      protected String rate
      +
      +
      • +
    • +
      +

      midpoint

      +
      protected String midpoint
      +
      +
      • +
    • +
      +

      scale

      +
      protected String scale
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      HHRate

      +
      public HHRate()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getType

      +
      public String getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(String value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getRate

      +
      public String getRate()
      +
      Gets the value of the rate property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRate

      +
      public void setRate(String value)
      +
      Sets the value of the rate property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getMidpoint

      +
      public String getMidpoint()
      +
      Gets the value of the midpoint property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setMidpoint

      +
      public void setMidpoint(String value)
      +
      Sets the value of the midpoint property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getScale

      +
      public String getScale()
      +
      Gets the value of the scale property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setScale

      +
      public void setScale(String value)
      +
      Sets the value of the scale property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/HHTime.html b/org/neuroml/model/HHTime.html new file mode 100644 index 00000000..fa4c1d22 --- /dev/null +++ b/org/neuroml/model/HHTime.html @@ -0,0 +1,464 @@ + + + + +HHTime (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class HHTime

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.HHTime
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class HHTime +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for HHTime complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="HHTime">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="type" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="rate" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="midpoint" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="scale" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="tau" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      type

      +
      protected String type
      +
      +
      • +
    • +
      +

      rate

      +
      protected String rate
      +
      +
      • +
    • +
      +

      midpoint

      +
      protected String midpoint
      +
      +
      • +
    • +
      +

      scale

      +
      protected String scale
      +
      +
      • +
    • +
      +

      tau

      +
      protected String tau
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      HHTime

      +
      public HHTime()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getType

      +
      public String getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(String value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getRate

      +
      public String getRate()
      +
      Gets the value of the rate property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRate

      +
      public void setRate(String value)
      +
      Sets the value of the rate property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getMidpoint

      +
      public String getMidpoint()
      +
      Gets the value of the midpoint property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setMidpoint

      +
      public void setMidpoint(String value)
      +
      Sets the value of the midpoint property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getScale

      +
      public String getScale()
      +
      Gets the value of the scale property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setScale

      +
      public void setScale(String value)
      +
      Sets the value of the scale property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTau

      +
      public String getTau()
      +
      Gets the value of the tau property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTau

      +
      public void setTau(String value)
      +
      Sets the value of the tau property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/HHVariable.html b/org/neuroml/model/HHVariable.html new file mode 100644 index 00000000..4e14536b --- /dev/null +++ b/org/neuroml/model/HHVariable.html @@ -0,0 +1,420 @@ + + + + +HHVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class HHVariable

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.HHVariable
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class HHVariable +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for HHVariable complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="HHVariable">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="type" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="rate" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="midpoint" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="scale" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      type

      +
      protected String type
      +
      +
      • +
    • +
      +

      rate

      +
      protected Float rate
      +
      +
      • +
    • +
      +

      midpoint

      +
      protected String midpoint
      +
      +
      • +
    • +
      +

      scale

      +
      protected String scale
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      HHVariable

      +
      public HHVariable()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getType

      +
      public String getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(String value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getRate

      +
      public Float getRate()
      +
      Gets the value of the rate property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setRate

      +
      public void setRate(Float value)
      +
      Sets the value of the rate property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      getMidpoint

      +
      public String getMidpoint()
      +
      Gets the value of the midpoint property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setMidpoint

      +
      public void setMidpoint(String value)
      +
      Sets the value of the midpoint property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getScale

      +
      public String getScale()
      +
      Gets the value of the scale property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setScale

      +
      public void setScale(String value)
      +
      Sets the value of the scale property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/HindmarshRose1984Cell.html b/org/neuroml/model/HindmarshRose1984Cell.html new file mode 100644 index 00000000..34b2d843 --- /dev/null +++ b/org/neuroml/model/HindmarshRose1984Cell.html @@ -0,0 +1,789 @@ + + + + +HindmarshRose1984Cell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class HindmarshRose1984Cell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BaseCellMembPotCap +
org.neuroml.model.HindmarshRose1984Cell
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class HindmarshRose1984Cell +extends BaseCellMembPotCap +implements org.jvnet.jaxb2_commons.lang.ToString2
+
The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting. It has a fast spiking subsystem, which is a generalization of the FitzHugh-Nagumo system, coupled to a slower subsystem which allows the model to fire bursts. The dynamical variables x, y, z correspond to the membrane potential, a recovery variable, and a slower adaptation current, respectively. See Hindmarsh J. L. , and Rose R. M. ( 1984 ) A model of neuronal bursting using three coupled first order differential equations. Proc. R. Soc. London, Ser. B 221:87–102. + \n + :param a: cubic term in x nullcline + :type a: none + :param b: quadratic term in x nullcline + :type b: none + :param c: constant term in y nullcline + :type c: none + :param d: quadratic term in y nullcline + :type d: none + :param r: timescale separation between slow and fast subsystem ( r greater than 0; r much less than 1 ) + :type r: none + :param s: related to adaptation + :type s: none + :param x1: related to the system's resting potential + :type x1: none + :param v_scaling: scaling of x for physiological membrane potential + :type v_scaling: voltage + :param x0: + :type x0: none + :param y0: + :type y0: none + :param z0: + :type z0: none + :param C: Total capacitance of the cell membrane + :type C: capacitance + + + +

Java class for HindmarshRose1984Cell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="HindmarshRose1984Cell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCellMembPotCap">
+       <attribute name="a" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="b" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="c" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="d" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="s" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="x1" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="r" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="x0" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="y0" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="z0" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="v_scaling" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      a

      +
      protected String a
      +
      +
      • +
    • +
      +

      b

      +
      protected String b
      +
      +
      • +
    • +
      +

      c

      +
      protected String c
      +
      +
      • +
    • +
      +

      d

      +
      protected String d
      +
      +
      • +
    • +
      +

      s

      +
      protected String s
      +
      +
      • +
    • +
      +

      x1

      +
      protected String x1
      +
      +
      • +
    • +
      +

      r

      +
      protected String r
      +
      +
      • +
    • +
      +

      x0

      +
      protected String x0
      +
      +
      • +
    • +
      +

      y0

      +
      protected String y0
      +
      +
      • +
    • +
      +

      z0

      +
      protected String z0
      +
      +
      • +
    • +
      +

      vScaling

      +
      protected String vScaling
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      HindmarshRose1984Cell

      +
      public HindmarshRose1984Cell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getA

      +
      public String getA()
      +
      Gets the value of the a property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setA

      +
      public void setA(String value)
      +
      Sets the value of the a property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getB

      +
      public String getB()
      +
      Gets the value of the b property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setB

      +
      public void setB(String value)
      +
      Sets the value of the b property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getC

      +
      public String getC()
      +
      Gets the value of the c property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setC

      +
      public void setC(String value)
      +
      Sets the value of the c property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getD

      +
      public String getD()
      +
      Gets the value of the d property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setD

      +
      public void setD(String value)
      +
      Sets the value of the d property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getS

      +
      public String getS()
      +
      Gets the value of the s property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setS

      +
      public void setS(String value)
      +
      Sets the value of the s property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getX1

      +
      public String getX1()
      +
      Gets the value of the x1 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setX1

      +
      public void setX1(String value)
      +
      Sets the value of the x1 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getR

      +
      public String getR()
      +
      Gets the value of the r property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setR

      +
      public void setR(String value)
      +
      Sets the value of the r property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getX0

      +
      public String getX0()
      +
      Gets the value of the x0 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setX0

      +
      public void setX0(String value)
      +
      Sets the value of the x0 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getY0

      +
      public String getY0()
      +
      Gets the value of the y0 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setY0

      +
      public void setY0(String value)
      +
      Sets the value of the y0 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getZ0

      +
      public String getZ0()
      +
      Gets the value of the z0 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setZ0

      +
      public void setZ0(String value)
      +
      Sets the value of the z0 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getVScaling

      +
      public String getVScaling()
      +
      Gets the value of the vScaling property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVScaling

      +
      public void setVScaling(String value)
      +
      Sets the value of the vScaling property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCellMembPotCap
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCellMembPotCap
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCellMembPotCap
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IFCondAlpha.html b/org/neuroml/model/IFCondAlpha.html new file mode 100644 index 00000000..4776a4c4 --- /dev/null +++ b/org/neuroml/model/IFCondAlpha.html @@ -0,0 +1,307 @@ + + + + +IFCondAlpha (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IFCondAlpha

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.BasePyNNIaFCell +
org.neuroml.model.BasePyNNIaFCondCell +
org.neuroml.model.IFCondAlpha
+
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IFCondAlpha +extends BasePyNNIaFCondCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for IF_cond_alpha complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IF_cond_alpha">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}basePyNNIaFCondCell">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IFCondAlpha

      +
      public IFCondAlpha()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IFCondExp.html b/org/neuroml/model/IFCondExp.html new file mode 100644 index 00000000..0624d955 --- /dev/null +++ b/org/neuroml/model/IFCondExp.html @@ -0,0 +1,307 @@ + + + + +IFCondExp (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IFCondExp

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.BasePyNNIaFCell +
org.neuroml.model.BasePyNNIaFCondCell +
org.neuroml.model.IFCondExp
+
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IFCondExp +extends BasePyNNIaFCondCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for IF_cond_exp complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IF_cond_exp">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}basePyNNIaFCondCell">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IFCondExp

      +
      public IFCondExp()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePyNNIaFCondCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IFCurrAlpha.html b/org/neuroml/model/IFCurrAlpha.html new file mode 100644 index 00000000..a7defe54 --- /dev/null +++ b/org/neuroml/model/IFCurrAlpha.html @@ -0,0 +1,295 @@ + + + + +IFCurrAlpha (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IFCurrAlpha

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.BasePyNNIaFCell +
org.neuroml.model.IFCurrAlpha
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IFCurrAlpha +extends BasePyNNIaFCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for IF_curr_alpha complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IF_curr_alpha">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}basePyNNIaFCell">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IFCurrAlpha

      +
      public IFCurrAlpha()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePyNNIaFCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePyNNIaFCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePyNNIaFCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IFCurrExp.html b/org/neuroml/model/IFCurrExp.html new file mode 100644 index 00000000..a57c279d --- /dev/null +++ b/org/neuroml/model/IFCurrExp.html @@ -0,0 +1,295 @@ + + + + +IFCurrExp (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IFCurrExp

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BasePyNNCell +
org.neuroml.model.BasePyNNIaFCell +
org.neuroml.model.IFCurrExp
+
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IFCurrExp +extends BasePyNNIaFCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none + + + +

Java class for IF_curr_exp complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IF_curr_exp">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}basePyNNIaFCell">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IFCurrExp

      +
      public IFCurrExp()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BasePyNNIaFCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BasePyNNIaFCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BasePyNNIaFCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IafCell.html b/org/neuroml/model/IafCell.html new file mode 100644 index 00000000..43396093 --- /dev/null +++ b/org/neuroml/model/IafCell.html @@ -0,0 +1,507 @@ + + + + +IafCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IafCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.IafCell
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
IafRefCell
+
+
+
public class IafCell +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance + + + +

Java class for IafCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IafCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <attribute name="leakReversal" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="thresh" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="reset" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="C" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_capacitance" />
+       <attribute name="leakConductance" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      leakReversal

      +
      protected String leakReversal
      +
      +
      • +
    • +
      +

      thresh

      +
      protected String thresh
      +
      +
      • +
    • +
      +

      reset

      +
      protected String reset
      +
      +
      • +
    • +
      +

      c

      +
      protected String c
      +
      +
      • +
    • +
      +

      leakConductance

      +
      protected String leakConductance
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IafCell

      +
      public IafCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getLeakReversal

      +
      public String getLeakReversal()
      +
      Gets the value of the leakReversal property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setLeakReversal

      +
      public void setLeakReversal(String value)
      +
      Sets the value of the leakReversal property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getThresh

      +
      public String getThresh()
      +
      Gets the value of the thresh property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setThresh

      +
      public void setThresh(String value)
      +
      Sets the value of the thresh property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getReset

      +
      public String getReset()
      +
      Gets the value of the reset property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setReset

      +
      public void setReset(String value)
      +
      Sets the value of the reset property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getC

      +
      public String getC()
      +
      Gets the value of the c property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setC

      +
      public void setC(String value)
      +
      Sets the value of the c property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getLeakConductance

      +
      public String getLeakConductance()
      +
      Gets the value of the leakConductance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setLeakConductance

      +
      public void setLeakConductance(String value)
      +
      Sets the value of the leakConductance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IafRefCell.html b/org/neuroml/model/IafRefCell.html new file mode 100644 index 00000000..8531895b --- /dev/null +++ b/org/neuroml/model/IafRefCell.html @@ -0,0 +1,337 @@ + + + + +IafRefCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IafRefCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.IafCell +
org.neuroml.model.IafRefCell
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IafRefCell +extends IafCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance + + + +

Java class for IafRefCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IafRefCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}IafCell">
+       <attribute name="refract" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      refract

      +
      protected String refract
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IafRefCell

      +
      public IafRefCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getRefract

      +
      public String getRefract()
      +
      Gets the value of the refract property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRefract

      +
      public void setRefract(String value)
      +
      Sets the value of the refract property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class IafCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class IafCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class IafCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IafTauCell.html b/org/neuroml/model/IafTauCell.html new file mode 100644 index 00000000..bf9235f7 --- /dev/null +++ b/org/neuroml/model/IafTauCell.html @@ -0,0 +1,461 @@ + + + + +IafTauCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IafTauCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.IafTauCell
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
IafTauRefCell
+
+
+
public class IafTauCell +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage + + + +

Java class for IafTauCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IafTauCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <attribute name="leakReversal" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="thresh" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="reset" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="tau" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      leakReversal

      +
      protected String leakReversal
      +
      +
      • +
    • +
      +

      thresh

      +
      protected String thresh
      +
      +
      • +
    • +
      +

      reset

      +
      protected String reset
      +
      +
      • +
    • +
      +

      tau

      +
      protected String tau
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IafTauCell

      +
      public IafTauCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getLeakReversal

      +
      public String getLeakReversal()
      +
      Gets the value of the leakReversal property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setLeakReversal

      +
      public void setLeakReversal(String value)
      +
      Sets the value of the leakReversal property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getThresh

      +
      public String getThresh()
      +
      Gets the value of the thresh property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setThresh

      +
      public void setThresh(String value)
      +
      Sets the value of the thresh property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getReset

      +
      public String getReset()
      +
      Gets the value of the reset property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setReset

      +
      public void setReset(String value)
      +
      Sets the value of the reset property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTau

      +
      public String getTau()
      +
      Gets the value of the tau property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTau

      +
      public void setTau(String value)
      +
      Sets the value of the tau property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IafTauRefCell.html b/org/neuroml/model/IafTauRefCell.html new file mode 100644 index 00000000..348290ce --- /dev/null +++ b/org/neuroml/model/IafTauRefCell.html @@ -0,0 +1,335 @@ + + + + +IafTauRefCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IafTauRefCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.IafTauCell +
org.neuroml.model.IafTauRefCell
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IafTauRefCell +extends IafTauCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage + + + +

Java class for IafTauRefCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IafTauRefCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}IafTauCell">
+       <attribute name="refract" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      refract

      +
      protected String refract
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IafTauRefCell

      +
      public IafTauRefCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getRefract

      +
      public String getRefract()
      +
      Gets the value of the refract property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRefract

      +
      public void setRefract(String value)
      +
      Sets the value of the refract property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class IafTauCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class IafTauCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class IafTauCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Include.html b/org/neuroml/model/Include.html new file mode 100644 index 00000000..da6cb140 --- /dev/null +++ b/org/neuroml/model/Include.html @@ -0,0 +1,291 @@ + + + + +Include (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Include

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Include
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Include +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Include all members of another **segmentGroup** in this group + + +

Java class for Include complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Include">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="segmentGroup" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Include

      +
      public Include()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IncludeType.html b/org/neuroml/model/IncludeType.html new file mode 100644 index 00000000..c8c3d294 --- /dev/null +++ b/org/neuroml/model/IncludeType.html @@ -0,0 +1,282 @@ + + + + +IncludeType (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IncludeType

+
+
java.lang.Object +
org.neuroml.model.IncludeType
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IncludeType +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for IncludeType complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IncludeType">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <attribute name="href" use="required" type="{http://www.w3.org/2001/XMLSchema}anyURI" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      href

      +
      protected String href
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IncludeType

      +
      public IncludeType()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getHref

      +
      public String getHref()
      +
      Gets the value of the href property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setHref

      +
      public void setHref(String value)
      +
      Sets the value of the href property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/InhomogeneousParameter.html b/org/neuroml/model/InhomogeneousParameter.html new file mode 100644 index 00000000..aabda546 --- /dev/null +++ b/org/neuroml/model/InhomogeneousParameter.html @@ -0,0 +1,433 @@ + + + + +InhomogeneousParameter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class InhomogeneousParameter

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.InhomogeneousParameter
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class InhomogeneousParameter +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ). + + +

Java class for InhomogeneousParameter complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="InhomogeneousParameter">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="proximal" type="{http://www.neuroml.org/schema/neuroml2}ProximalDetails" minOccurs="0"/>
+         <element name="distal" type="{http://www.neuroml.org/schema/neuroml2}DistalDetails" minOccurs="0"/>
+       </sequence>
+       <attribute name="variable" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="metric" use="required" type="{http://www.neuroml.org/schema/neuroml2}Metric" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      InhomogeneousParameter

      +
      public InhomogeneousParameter()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getProximal

      +
      public ProximalDetails getProximal()
      +
      Gets the value of the proximal property.
      +
      +
      Returns:
      +
      possible object is + ProximalDetails
      +
      +
      +
      • +
    • +
      +

      setProximal

      +
      public void setProximal(ProximalDetails value)
      +
      Sets the value of the proximal property.
      +
      +
      Parameters:
      +
      value - allowed object is + ProximalDetails
      +
      +
      +
      • +
    • +
      +

      getDistal

      +
      public DistalDetails getDistal()
      +
      Gets the value of the distal property.
      +
      +
      Returns:
      +
      possible object is + DistalDetails
      +
      +
      +
      • +
    • +
      +

      setDistal

      +
      public void setDistal(DistalDetails value)
      +
      Sets the value of the distal property.
      +
      +
      Parameters:
      +
      value - allowed object is + DistalDetails
      +
      +
      +
      • +
    • +
      +

      getVariable

      +
      public String getVariable()
      +
      Gets the value of the variable property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVariable

      +
      public void setVariable(String value)
      +
      Sets the value of the variable property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getMetric

      +
      public Metric getMetric()
      +
      Gets the value of the metric property.
      +
      +
      Returns:
      +
      possible object is + Metric
      +
      +
      +
      • +
    • +
      +

      setMetric

      +
      public void setMetric(Metric value)
      +
      Sets the value of the metric property.
      +
      +
      Parameters:
      +
      value - allowed object is + Metric
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/InhomogeneousValue.html b/org/neuroml/model/InhomogeneousValue.html new file mode 100644 index 00000000..57ad8513 --- /dev/null +++ b/org/neuroml/model/InhomogeneousValue.html @@ -0,0 +1,335 @@ + + + + +InhomogeneousValue (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class InhomogeneousValue

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.InhomogeneousValue
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class InhomogeneousValue +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies the **value** of an **inhomogeneousParameter.** For usage see **variableParameter** + + +

Java class for InhomogeneousValue complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="InhomogeneousValue">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="inhomogeneousParameter" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      inhomogeneousParameter

      +
      protected String inhomogeneousParameter
      +
      +
      • +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      InhomogeneousValue

      +
      public InhomogeneousValue()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getInhomogeneousParameter

      +
      public String getInhomogeneousParameter()
      +
      Gets the value of the inhomogeneousParameter property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInhomogeneousParameter

      +
      public void setInhomogeneousParameter(String value)
      +
      Sets the value of the inhomogeneousParameter property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/InitMembPotential.html b/org/neuroml/model/InitMembPotential.html new file mode 100644 index 00000000..ccabfe52 --- /dev/null +++ b/org/neuroml/model/InitMembPotential.html @@ -0,0 +1,339 @@ + + + + +InitMembPotential (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class InitMembPotential

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.InitMembPotential
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class InitMembPotential +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Explicitly set initial membrane potential for the cell + \n + :param value: + :type value: voltage + + + +

Java class for InitMembPotential complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="InitMembPotential">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="value" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      InitMembPotential

      +
      public InitMembPotential()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Input.html b/org/neuroml/model/Input.html new file mode 100644 index 00000000..ae8f00dc --- /dev/null +++ b/org/neuroml/model/Input.html @@ -0,0 +1,435 @@ + + + + +Input (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Input

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.Input
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
InputW
+
+
+
public class Input +extends BaseNonNegativeIntegerId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0. 5 ). + + +

Java class for Input complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Input">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseNonNegativeIntegerId">
+       <attribute name="target" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2PopulationReferencePath" />
+       <attribute name="destination" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="segmentId" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+       <attribute name="fractionAlong" type="{http://www.neuroml.org/schema/neuroml2}ZeroToOne" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      target

      +
      protected String target
      +
      +
      • +
    • +
      +

      destination

      +
      protected String destination
      +
      +
      • +
    • +
      +

      segmentId

      +
      protected Integer segmentId
      +
      +
      • +
    • +
      +

      fractionAlong

      +
      protected Float fractionAlong
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Input

      +
      public Input()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTarget

      +
      public String getTarget()
      +
      Gets the value of the target property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTarget

      +
      public void setTarget(String value)
      +
      Sets the value of the target property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDestination

      +
      public String getDestination()
      +
      Gets the value of the destination property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDestination

      +
      public void setDestination(String value)
      +
      Sets the value of the destination property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentId

      +
      public Integer getSegmentId()
      +
      Gets the value of the segmentId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentId

      +
      public void setSegmentId(Integer value)
      +
      Sets the value of the segmentId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getFractionAlong

      +
      public Float getFractionAlong()
      +
      Gets the value of the fractionAlong property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setFractionAlong

      +
      public void setFractionAlong(Float value)
      +
      Sets the value of the fractionAlong property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/InputList.html b/org/neuroml/model/InputList.html new file mode 100644 index 00000000..73daa146 --- /dev/null +++ b/org/neuroml/model/InputList.html @@ -0,0 +1,423 @@ + + + + +InputList (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class InputList

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.InputList
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class InputList +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
An explicit list of **input** s to a **population.** + + +

Java class for InputList complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="InputList">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="input" type="{http://www.neuroml.org/schema/neuroml2}Input" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="inputW" type="{http://www.neuroml.org/schema/neuroml2}InputW" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="population" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="component" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      input

      +
      protected List<Input> input
      +
      +
      • +
    • +
      +

      inputW

      +
      protected List<InputW> inputW
      +
      +
      • +
    • +
      +

      population

      +
      protected String population
      +
      +
      • +
    • +
      +

      component

      +
      protected String component
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      InputList

      +
      public InputList()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getInput

      +
      public List<Input> getInput()
      +
      Gets the value of the input property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the input property. + +

      + For example, to add a new item, do as follows: + 

      +    getInput().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Input

      +
      +
      • +
    • +
      +

      getInputW

      +
      public List<InputW> getInputW()
      +
      Gets the value of the inputW property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the inputW property. + +

      + For example, to add a new item, do as follows: + 

      +    getInputW().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + InputW

      +
      +
      • +
    • +
      +

      getPopulation

      +
      public String getPopulation()
      +
      Gets the value of the population property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPopulation

      +
      public void setPopulation(String value)
      +
      Sets the value of the population property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getComponent

      +
      public String getComponent()
      +
      Gets the value of the component property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setComponent

      +
      public void setComponent(String value)
      +
      Sets the value of the component property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/InputW.html b/org/neuroml/model/InputW.html new file mode 100644 index 00000000..ad3e7d7b --- /dev/null +++ b/org/neuroml/model/InputW.html @@ -0,0 +1,301 @@ + + + + +InputW (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class InputW

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.Input +
org.neuroml.model.InputW
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class InputW +extends Input +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies input lists. Can set **weight** to scale individual inputs. + \n + :param weight: + :type weight: none + + + +

Java class for InputW complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="InputW">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Input">
+       <attribute name="weight" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      weight

      +
      protected float weight
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      InputW

      +
      public InputW()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getWeight

      +
      public float getWeight()
      +
      Gets the value of the weight property.
      +
      +
      • +
    • +
      +

      setWeight

      +
      public void setWeight(float value)
      +
      Sets the value of the weight property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Input
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Input
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Input
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Instance.html b/org/neuroml/model/Instance.html new file mode 100644 index 00000000..f6030b09 --- /dev/null +++ b/org/neuroml/model/Instance.html @@ -0,0 +1,469 @@ + + + + +Instance (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Instance

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Instance
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Instance +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a single instance of a component in a **population** ( placed at **location** ). + + +

Java class for Instance complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Instance">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <sequence>
+         <element name="location" type="{http://www.neuroml.org/schema/neuroml2}Location"/>
+       </sequence>
+       <attribute name="id" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+       <attribute name="i" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+       <attribute name="j" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+       <attribute name="k" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Instance

      +
      public Instance()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getLocation

      +
      public Location getLocation()
      +
      Gets the value of the location property.
      +
      +
      Returns:
      +
      possible object is + Location
      +
      +
      +
      • +
    • +
      +

      setLocation

      +
      public void setLocation(Location value)
      +
      Sets the value of the location property.
      +
      +
      Parameters:
      +
      value - allowed object is + Location
      +
      +
      +
      • +
    • +
      +

      getId

      +
      public BigInteger getId()
      +
      Gets the value of the id property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setId

      +
      public void setId(BigInteger value)
      +
      Sets the value of the id property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      getI

      +
      public BigInteger getI()
      +
      Gets the value of the i property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setI

      +
      public void setI(BigInteger value)
      +
      Sets the value of the i property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      getJ

      +
      public BigInteger getJ()
      +
      Gets the value of the j property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setJ

      +
      public void setJ(BigInteger value)
      +
      Sets the value of the j property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      getK

      +
      public BigInteger getK()
      +
      Gets the value of the k property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setK

      +
      public void setK(BigInteger value)
      +
      Sets the value of the k property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/InstanceRequirement.html b/org/neuroml/model/InstanceRequirement.html new file mode 100644 index 00000000..4cb94494 --- /dev/null +++ b/org/neuroml/model/InstanceRequirement.html @@ -0,0 +1,326 @@ + + + + +InstanceRequirement (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class InstanceRequirement

+
+
java.lang.Object +
org.neuroml.model.InstanceRequirement
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class InstanceRequirement +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for InstanceRequirement complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="InstanceRequirement">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      name

      +
      protected String name
      +
      +
      • +
    • +
      +

      type

      +
      protected String type
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      InstanceRequirement

      +
      public InstanceRequirement()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getName

      +
      public String getName()
      +
      Gets the value of the name property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setName

      +
      public void setName(String value)
      +
      Sets the value of the name property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getType

      +
      public String getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(String value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IntracellularProperties.html b/org/neuroml/model/IntracellularProperties.html new file mode 100644 index 00000000..d2c1aaa1 --- /dev/null +++ b/org/neuroml/model/IntracellularProperties.html @@ -0,0 +1,331 @@ + + + + +IntracellularProperties (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IntracellularProperties

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.IntracellularProperties
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
IntracellularProperties2CaPools
+
+
+
public class IntracellularProperties +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Biophysical properties related to the intracellular space within the **cell** , such as the **resistivity** and the list of ionic **species** present. **caConc** and **caConcExt** are explicitly exposed here to facilitate accessing these values from other Components, even though **caConcExt** is clearly not an intracellular property + + +

Java class for IntracellularProperties complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IntracellularProperties">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <sequence>
+         <element name="species" type="{http://www.neuroml.org/schema/neuroml2}Species" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="resistivity" type="{http://www.neuroml.org/schema/neuroml2}Resistivity" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IntracellularProperties

      +
      public IntracellularProperties()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSpecies

      +
      public List<Species> getSpecies()
      +
      Gets the value of the species property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the species property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpecies().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Species

      +
      +
      • +
    • +
      +

      getResistivity

      +
      public List<Resistivity> getResistivity()
      +
      Gets the value of the resistivity property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the resistivity property. + +

      + For example, to add a new item, do as follows: + 

      +    getResistivity().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Resistivity

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IntracellularProperties2CaPools.html b/org/neuroml/model/IntracellularProperties2CaPools.html new file mode 100644 index 00000000..9a1f51ac --- /dev/null +++ b/org/neuroml/model/IntracellularProperties2CaPools.html @@ -0,0 +1,241 @@ + + + + +IntracellularProperties2CaPools (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IntracellularProperties2CaPools

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.IntracellularProperties +
org.neuroml.model.IntracellularProperties2CaPools
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IntracellularProperties2CaPools +extends IntracellularProperties +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Variant of intracellularProperties with 2 independent Ca pools + + +

Java class for IntracellularProperties2CaPools complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IntracellularProperties2CaPools">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}IntracellularProperties">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IntracellularProperties2CaPools

      +
      public IntracellularProperties2CaPools()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class IntracellularProperties
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class IntracellularProperties
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class IntracellularProperties
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IonChannel.html b/org/neuroml/model/IonChannel.html new file mode 100644 index 00000000..3a05b321 --- /dev/null +++ b/org/neuroml/model/IonChannel.html @@ -0,0 +1,725 @@ + + + + +IonChannel (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IonChannel

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.IonChannelScalable +
org.neuroml.model.IonChannel
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
IonChannelHH, IonChannelVShift
+
+
+
public class IonChannel +extends IonChannelScalable +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Note **ionChannel** and **ionChannelHH** are currently functionally identical. This is needed since many existing examples use ionChannel, some use ionChannelHH. NeuroML v2beta4 should remove one of these, probably ionChannelHH. + \n + :param conductance: + :type conductance: conductance + + + +

Java class for IonChannel complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IonChannel">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}IonChannelScalable">
+       <choice>
+         <element name="gate" type="{http://www.neuroml.org/schema/neuroml2}GateHHUndetermined" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="gateHHrates" type="{http://www.neuroml.org/schema/neuroml2}GateHHRates" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="gateHHratesTau" type="{http://www.neuroml.org/schema/neuroml2}GateHHRatesTau" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="gateHHtauInf" type="{http://www.neuroml.org/schema/neuroml2}GateHHTauInf" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="gateHHratesInf" type="{http://www.neuroml.org/schema/neuroml2}GateHHRatesInf" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="gateHHratesTauInf" type="{http://www.neuroml.org/schema/neuroml2}GateHHRatesTauInf" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="gateHHInstantaneous" type="{http://www.neuroml.org/schema/neuroml2}GateHHInstantaneous" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="gateFractional" type="{http://www.neuroml.org/schema/neuroml2}GateFractional" maxOccurs="unbounded" minOccurs="0"/>
+       </choice>
+       <attribute name="species" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="type" type="{http://www.neuroml.org/schema/neuroml2}channelTypes" />
+       <attribute name="conductance" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IonChannel

      +
      public IonChannel()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getGate

      +
      public List<GateHHUndetermined> getGate()
      +
      Gets the value of the gate property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gate property. + +

      + For example, to add a new item, do as follows: + 

      +    getGate().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateHHUndetermined

      +
      +
      • +
    • +
      +

      getGateHHrates

      +
      public List<GateHHRates> getGateHHrates()
      +
      Gets the value of the gateHHrates property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gateHHrates property. + +

      + For example, to add a new item, do as follows: + 

      +    getGateHHrates().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateHHRates

      +
      +
      • +
    • +
      +

      getGateHHratesTau

      +
      public List<GateHHRatesTau> getGateHHratesTau()
      +
      Gets the value of the gateHHratesTau property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gateHHratesTau property. + +

      + For example, to add a new item, do as follows: + 

      +    getGateHHratesTau().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateHHRatesTau

      +
      +
      • +
    • +
      +

      getGateHHtauInf

      +
      public List<GateHHTauInf> getGateHHtauInf()
      +
      Gets the value of the gateHHtauInf property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gateHHtauInf property. + +

      + For example, to add a new item, do as follows: + 

      +    getGateHHtauInf().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateHHTauInf

      +
      +
      • +
    • +
      +

      getGateHHratesInf

      +
      public List<GateHHRatesInf> getGateHHratesInf()
      +
      Gets the value of the gateHHratesInf property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gateHHratesInf property. + +

      + For example, to add a new item, do as follows: + 

      +    getGateHHratesInf().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateHHRatesInf

      +
      +
      • +
    • +
      +

      getGateHHratesTauInf

      +
      public List<GateHHRatesTauInf> getGateHHratesTauInf()
      +
      Gets the value of the gateHHratesTauInf property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gateHHratesTauInf property. + +

      + For example, to add a new item, do as follows: + 

      +    getGateHHratesTauInf().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateHHRatesTauInf

      +
      +
      • +
    • +
      +

      getGateHHInstantaneous

      +
      public List<GateHHInstantaneous> getGateHHInstantaneous()
      +
      Gets the value of the gateHHInstantaneous property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gateHHInstantaneous property. + +

      + For example, to add a new item, do as follows: + 

      +    getGateHHInstantaneous().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateHHInstantaneous

      +
      +
      • +
    • +
      +

      getGateFractional

      +
      public List<GateFractional> getGateFractional()
      +
      Gets the value of the gateFractional property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gateFractional property. + +

      + For example, to add a new item, do as follows: + 

      +    getGateFractional().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateFractional

      +
      +
      • +
    • +
      +

      getSpecies

      +
      public String getSpecies()
      +
      Gets the value of the species property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSpecies

      +
      public void setSpecies(String value)
      +
      Sets the value of the species property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getType

      +
      public ChannelTypes getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + ChannelTypes
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(ChannelTypes value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + ChannelTypes
      +
      +
      +
      • +
    • +
      +

      getConductance

      +
      public String getConductance()
      +
      Gets the value of the conductance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setConductance

      +
      public void setConductance(String value)
      +
      Sets the value of the conductance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class IonChannelScalable
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class IonChannelScalable
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class IonChannelScalable
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IonChannelHH.html b/org/neuroml/model/IonChannelHH.html new file mode 100644 index 00000000..b2c7d0d0 --- /dev/null +++ b/org/neuroml/model/IonChannelHH.html @@ -0,0 +1,269 @@ + + + + +IonChannelHH (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IonChannelHH

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.IonChannelScalable +
org.neuroml.model.IonChannel +
org.neuroml.model.IonChannelHH
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IonChannelHH +extends IonChannel +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Note **ionChannel** and **ionChannelHH** are currently functionally identical. This is needed since many existing examples use ionChannel, some use ionChannelHH. NeuroML v2beta4 should remove one of these, probably ionChannelHH. + \n + :param conductance: + :type conductance: conductance + + + +

Java class for IonChannelHH complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IonChannelHH">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}IonChannel">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IonChannelHH

      +
      public IonChannelHH()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class IonChannel
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class IonChannel
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class IonChannel
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IonChannelKS.html b/org/neuroml/model/IonChannelKS.html new file mode 100644 index 00000000..b95be00d --- /dev/null +++ b/org/neuroml/model/IonChannelKS.html @@ -0,0 +1,440 @@ + + + + +IonChannelKS (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IonChannelKS

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.IonChannelKS
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IonChannelKS +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param conductance: + :type conductance: conductance + + + +

Java class for IonChannelKS complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IonChannelKS">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="gateKS" type="{http://www.neuroml.org/schema/neuroml2}GateKS" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="species" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="conductance" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      gateKS

      +
      protected List<GateKS> gateKS
      +
      +
      • +
    • +
      +

      species

      +
      protected String species
      +
      +
      • +
    • +
      +

      conductance

      +
      protected String conductance
      +
      +
      • +
    • +
      +

      neuroLexId

      +
      protected String neuroLexId
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IonChannelKS

      +
      public IonChannelKS()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getGateKS

      +
      public List<GateKS> getGateKS()
      +
      Gets the value of the gateKS property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gateKS property. + +

      + For example, to add a new item, do as follows: + 

      +    getGateKS().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GateKS

      +
      +
      • +
    • +
      +

      getSpecies

      +
      public String getSpecies()
      +
      Gets the value of the species property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSpecies

      +
      public void setSpecies(String value)
      +
      Sets the value of the species property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getConductance

      +
      public String getConductance()
      +
      Gets the value of the conductance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setConductance

      +
      public void setConductance(String value)
      +
      Sets the value of the conductance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IonChannelScalable.html b/org/neuroml/model/IonChannelScalable.html new file mode 100644 index 00000000..29f8e829 --- /dev/null +++ b/org/neuroml/model/IonChannelScalable.html @@ -0,0 +1,349 @@ + + + + +IonChannelScalable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IonChannelScalable

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.IonChannelScalable
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
IonChannel
+
+
+
public class IonChannelScalable +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for IonChannelScalable complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IonChannelScalable">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="q10ConductanceScaling" type="{http://www.neuroml.org/schema/neuroml2}Q10ConductanceScaling" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IonChannelScalable

      +
      public IonChannelScalable()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getQ10ConductanceScaling

      +
      public List<Q10ConductanceScaling> getQ10ConductanceScaling()
      +
      Gets the value of the q10ConductanceScaling property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the q10ConductanceScaling property. + +

      + For example, to add a new item, do as follows: + 

      +    getQ10ConductanceScaling().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Q10ConductanceScaling

      +
      +
      • +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IonChannelVShift.html b/org/neuroml/model/IonChannelVShift.html new file mode 100644 index 00000000..917426ee --- /dev/null +++ b/org/neuroml/model/IonChannelVShift.html @@ -0,0 +1,329 @@ + + + + +IonChannelVShift (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IonChannelVShift

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.IonChannelScalable +
org.neuroml.model.IonChannel +
org.neuroml.model.IonChannelVShift
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IonChannelVShift +extends IonChannel +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates. The exact usage of **vShift** in expressions for rates is determined by the individual gates. + \n + :param vShift: + :type vShift: voltage + :param conductance: + :type conductance: conductance + + + +

Java class for IonChannelVShift complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IonChannelVShift">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}IonChannel">
+       <attribute name="vShift" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      vShift

      +
      protected String vShift
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IonChannelVShift

      +
      public IonChannelVShift()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVShift

      +
      public String getVShift()
      +
      Gets the value of the vShift property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVShift

      +
      public void setVShift(String value)
      +
      Sets the value of the vShift property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class IonChannel
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class IonChannel
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class IonChannel
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Izhikevich2007Cell.html b/org/neuroml/model/Izhikevich2007Cell.html new file mode 100644 index 00000000..356f79dc --- /dev/null +++ b/org/neuroml/model/Izhikevich2007Cell.html @@ -0,0 +1,697 @@ + + + + +Izhikevich2007Cell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Izhikevich2007Cell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.BaseCellMembPotCap +
org.neuroml.model.Izhikevich2007Cell
+
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Izhikevich2007Cell +extends BaseCellMembPotCap +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance + + + +

Java class for Izhikevich2007Cell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Izhikevich2007Cell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCellMembPotCap">
+       <attribute name="v0" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="k" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductancePerVoltage" />
+       <attribute name="vr" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="vt" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="vpeak" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="a" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_pertime" />
+       <attribute name="b" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+       <attribute name="c" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="d" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_current" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      v0

      +
      protected String v0
      +
      +
      • +
    • +
      +

      k

      +
      protected String k
      +
      +
      • +
    • +
      +

      vr

      +
      protected String vr
      +
      +
      • +
    • +
      +

      vt

      +
      protected String vt
      +
      +
      • +
    • +
      +

      vpeak

      +
      protected String vpeak
      +
      +
      • +
    • +
      +

      a

      +
      protected String a
      +
      +
      • +
    • +
      +

      b

      +
      protected String b
      +
      +
      • +
    • +
      +

      c

      +
      protected String c
      +
      +
      • +
    • +
      +

      d

      +
      protected String d
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Izhikevich2007Cell

      +
      public Izhikevich2007Cell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getV0

      +
      public String getV0()
      +
      Gets the value of the v0 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setV0

      +
      public void setV0(String value)
      +
      Sets the value of the v0 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getK

      +
      public String getK()
      +
      Gets the value of the k property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setK

      +
      public void setK(String value)
      +
      Sets the value of the k property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getVr

      +
      public String getVr()
      +
      Gets the value of the vr property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVr

      +
      public void setVr(String value)
      +
      Sets the value of the vr property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getVt

      +
      public String getVt()
      +
      Gets the value of the vt property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVt

      +
      public void setVt(String value)
      +
      Sets the value of the vt property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getVpeak

      +
      public String getVpeak()
      +
      Gets the value of the vpeak property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVpeak

      +
      public void setVpeak(String value)
      +
      Sets the value of the vpeak property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getA

      +
      public String getA()
      +
      Gets the value of the a property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setA

      +
      public void setA(String value)
      +
      Sets the value of the a property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getB

      +
      public String getB()
      +
      Gets the value of the b property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setB

      +
      public void setB(String value)
      +
      Sets the value of the b property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getC

      +
      public String getC()
      +
      Gets the value of the c property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setC

      +
      public void setC(String value)
      +
      Sets the value of the c property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getD

      +
      public String getD()
      +
      Gets the value of the d property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setD

      +
      public void setD(String value)
      +
      Sets the value of the d property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCellMembPotCap
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCellMembPotCap
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCellMembPotCap
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/IzhikevichCell.html b/org/neuroml/model/IzhikevichCell.html new file mode 100644 index 00000000..35d22bb7 --- /dev/null +++ b/org/neuroml/model/IzhikevichCell.html @@ -0,0 +1,549 @@ + + + + +IzhikevichCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class IzhikevichCell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.IzhikevichCell
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class IzhikevichCell +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage + + + +

Java class for IzhikevichCell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="IzhikevichCell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <attribute name="v0" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="thresh" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="a" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="b" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="c" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="d" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      v0

      +
      protected String v0
      +
      +
      • +
    • +
      +

      thresh

      +
      protected String thresh
      +
      +
      • +
    • +
      +

      a

      +
      protected String a
      +
      +
      • +
    • +
      +

      b

      +
      protected String b
      +
      +
      • +
    • +
      +

      c

      +
      protected String c
      +
      +
      • +
    • +
      +

      d

      +
      protected String d
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      IzhikevichCell

      +
      public IzhikevichCell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getV0

      +
      public String getV0()
      +
      Gets the value of the v0 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setV0

      +
      public void setV0(String value)
      +
      Sets the value of the v0 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getThresh

      +
      public String getThresh()
      +
      Gets the value of the thresh property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setThresh

      +
      public void setThresh(String value)
      +
      Sets the value of the thresh property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getA

      +
      public String getA()
      +
      Gets the value of the a property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setA

      +
      public void setA(String value)
      +
      Sets the value of the a property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getB

      +
      public String getB()
      +
      Gets the value of the b property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setB

      +
      public void setB(String value)
      +
      Sets the value of the b property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getC

      +
      public String getC()
      +
      Gets the value of the c property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setC

      +
      public void setC(String value)
      +
      Sets the value of the c property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getD

      +
      public String getD()
      +
      Gets the value of the d property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setD

      +
      public void setD(String value)
      +
      Sets the value of the d property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/LEMSProperty.html b/org/neuroml/model/LEMSProperty.html new file mode 100644 index 00000000..dbc18f50 --- /dev/null +++ b/org/neuroml/model/LEMSProperty.html @@ -0,0 +1,296 @@ + + + + +LEMSProperty (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class LEMSProperty

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalType +
org.neuroml.model.LEMSProperty
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class LEMSProperty +extends NamedDimensionalType +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for LEMS_Property complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="LEMS_Property">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}NamedDimensionalType">
+       <attribute name="defaultValue" type="{http://www.w3.org/2001/XMLSchema}double" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      defaultValue

      +
      protected Double defaultValue
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      LEMSProperty

      +
      public LEMSProperty()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getDefaultValue

      +
      public Double getDefaultValue()
      +
      Gets the value of the defaultValue property.
      +
      +
      Returns:
      +
      possible object is + Double
      +
      +
      +
      • +
    • +
      +

      setDefaultValue

      +
      public void setDefaultValue(Double value)
      +
      Sets the value of the defaultValue property.
      +
      +
      Parameters:
      +
      value - allowed object is + Double
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class NamedDimensionalType
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class NamedDimensionalType
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class NamedDimensionalType
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Layout.html b/org/neuroml/model/Layout.html new file mode 100644 index 00000000..505ad60b --- /dev/null +++ b/org/neuroml/model/Layout.html @@ -0,0 +1,422 @@ + + + + +Layout (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Layout

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Layout
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Layout +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for Layout complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Layout">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <choice>
+         <element name="random" type="{http://www.neuroml.org/schema/neuroml2}RandomLayout"/>
+         <element name="grid" type="{http://www.neuroml.org/schema/neuroml2}GridLayout"/>
+         <element name="unstructured" type="{http://www.neuroml.org/schema/neuroml2}UnstructuredLayout"/>
+       </choice>
+       <attribute name="space" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Layout

      +
      public Layout()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getRandom

      +
      public RandomLayout getRandom()
      +
      Gets the value of the random property.
      +
      +
      Returns:
      +
      possible object is + RandomLayout
      +
      +
      +
      • +
    • +
      +

      setRandom

      +
      public void setRandom(RandomLayout value)
      +
      Sets the value of the random property.
      +
      +
      Parameters:
      +
      value - allowed object is + RandomLayout
      +
      +
      +
      • +
    • +
      +

      getGrid

      +
      public GridLayout getGrid()
      +
      Gets the value of the grid property.
      +
      +
      Returns:
      +
      possible object is + GridLayout
      +
      +
      +
      • +
    • +
      +

      setGrid

      +
      public void setGrid(GridLayout value)
      +
      Sets the value of the grid property.
      +
      +
      Parameters:
      +
      value - allowed object is + GridLayout
      +
      +
      +
      • +
    • +
      +

      getUnstructured

      +
      public UnstructuredLayout getUnstructured()
      +
      Gets the value of the unstructured property.
      +
      +
      Returns:
      +
      possible object is + UnstructuredLayout
      +
      +
      +
      • +
    • +
      +

      setUnstructured

      +
      public void setUnstructured(UnstructuredLayout value)
      +
      Sets the value of the unstructured property.
      +
      +
      Parameters:
      +
      value - allowed object is + UnstructuredLayout
      +
      +
      +
      • +
    • +
      +

      getSpace

      +
      public String getSpace()
      +
      Gets the value of the space property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSpace

      +
      public void setSpace(String value)
      +
      Sets the value of the space property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/LinearGradedSynapse.html b/org/neuroml/model/LinearGradedSynapse.html new file mode 100644 index 00000000..50cafd84 --- /dev/null +++ b/org/neuroml/model/LinearGradedSynapse.html @@ -0,0 +1,319 @@ + + + + +LinearGradedSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class LinearGradedSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.LinearGradedSynapse
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class LinearGradedSynapse +extends BaseSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Behaves just like a one way gap junction. + \n + :param conductance: + :type conductance: conductance + + + +

Java class for LinearGradedSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="LinearGradedSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseSynapse">
+       <attribute name="conductance" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductance" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      conductance

      +
      protected String conductance
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      LinearGradedSynapse

      +
      public LinearGradedSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getConductance

      +
      public String getConductance()
      +
      Gets the value of the conductance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setConductance

      +
      public void setConductance(String value)
      +
      Sets the value of the conductance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Location.html b/org/neuroml/model/Location.html new file mode 100644 index 00000000..7adc69dd --- /dev/null +++ b/org/neuroml/model/Location.html @@ -0,0 +1,357 @@ + + + + +Location (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Location

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Location
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Location +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** + \n + :param x: + :type x: none + :param y: + :type y: none + :param z: + :type z: none + + + +

Java class for Location complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Location">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+
    + +
  • +
    +

    Field Summary

    +
    Fields
    +
    +
    Modifier and Type
    +
    Field
    +
    Description
    +
    protected float
    +
    x
    +
     
    +
    protected float
    +
    y
    +
     
    +
    protected float
    +
    z
    +
     
    +
    +
    +
    • + +
  • +
    +

    Constructor Summary

    +
    Constructors
    +
    +
    Constructor
    +
    Description
    +
    Location()
    +
     
    +
    +
    +
    • + +
  • +
    +

    Method Summary

    +
    +
    +
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    StringBuilder
    +
    append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
    +
     
    +
    StringBuilder
    +
    appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
    +
     
    +
    float
    +
    getX()
    +
    +
    Gets the value of the x property.
    +
    +
    float
    +
    getY()
    +
    +
    Gets the value of the y property.
    +
    +
    float
    +
    getZ()
    +
    +
    Gets the value of the z property.
    +
    +
    void
    +
    setX(float value)
    +
    +
    Sets the value of the x property.
    +
    +
    void
    +
    setY(float value)
    +
    +
    Sets the value of the y property.
    +
    +
    void
    +
    setZ(float value)
    +
    +
    Sets the value of the z property.
    +
    +
    String
    +
    toString()
    +
     
    +
    +
    +
    +
    +

    Methods inherited from class java.lang.Object

    +clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
    +
    +
    • +
+
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      x

      +
      protected float x
      +
      +
      • +
    • +
      +

      y

      +
      protected float y
      +
      +
      • +
    • +
      +

      z

      +
      protected float z
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Location

      +
      public Location()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getX

      +
      public float getX()
      +
      Gets the value of the x property.
      +
      +
      • +
    • +
      +

      setX

      +
      public void setX(float value)
      +
      Sets the value of the x property.
      +
      +
      • +
    • +
      +

      getY

      +
      public float getY()
      +
      Gets the value of the y property.
      +
      +
      • +
    • +
      +

      setY

      +
      public void setY(float value)
      +
      Sets the value of the y property.
      +
      +
      • +
    • +
      +

      getZ

      +
      public float getZ()
      +
      Gets the value of the z property.
      +
      +
      • +
    • +
      +

      setZ

      +
      public void setZ(float value)
      +
      Sets the value of the z property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Member.html b/org/neuroml/model/Member.html new file mode 100644 index 00000000..e1dd99e5 --- /dev/null +++ b/org/neuroml/model/Member.html @@ -0,0 +1,291 @@ + + + + +Member (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Member

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Member
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Member +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A single identified **segment** which is part of the **segmentGroup** + + +

Java class for Member complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Member">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="segment" use="required" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      segment

      +
      protected Integer segment
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Member

      +
      public Member()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSegment

      +
      public Integer getSegment()
      +
      Gets the value of the segment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegment

      +
      public void setSegment(Integer value)
      +
      Sets the value of the segment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/MembraneProperties.html b/org/neuroml/model/MembraneProperties.html new file mode 100644 index 00000000..7b8d5499 --- /dev/null +++ b/org/neuroml/model/MembraneProperties.html @@ -0,0 +1,721 @@ + + + + +MembraneProperties (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class MembraneProperties

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.MembraneProperties
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
MembraneProperties2CaPools
+
+
+
public class MembraneProperties +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Properties specific to the membrane, such as the **populations** of channels, **channelDensities,** **specificCapacitance,** etc. + + +

Java class for MembraneProperties complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="MembraneProperties">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <sequence>
+         <element name="channelPopulation" type="{http://www.neuroml.org/schema/neuroml2}ChannelPopulation" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="channelDensity" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensity" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="channelDensityVShift" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensityVShift" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="channelDensityNernst" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensityNernst" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="channelDensityGHK" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensityGHK" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="channelDensityGHK2" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensityGHK2" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="channelDensityNonUniform" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensityNonUniform" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="channelDensityNonUniformNernst" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensityNonUniformNernst" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="channelDensityNonUniformGHK" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensityNonUniformGHK" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="spikeThresh" type="{http://www.neuroml.org/schema/neuroml2}SpikeThresh" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="specificCapacitance" type="{http://www.neuroml.org/schema/neuroml2}SpecificCapacitance" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="initMembPotential" type="{http://www.neuroml.org/schema/neuroml2}InitMembPotential" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      MembraneProperties

      +
      public MembraneProperties()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getChannelPopulation

      +
      public List<ChannelPopulation> getChannelPopulation()
      +
      Gets the value of the channelPopulation property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelPopulation property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelPopulation().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelPopulation

      +
      +
      • +
    • +
      +

      getChannelDensity

      +
      public List<ChannelDensity> getChannelDensity()
      +
      Gets the value of the channelDensity property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensity property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensity().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensity

      +
      +
      • +
    • +
      +

      getChannelDensityVShift

      +
      public List<ChannelDensityVShift> getChannelDensityVShift()
      +
      Gets the value of the channelDensityVShift property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensityVShift property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensityVShift().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensityVShift

      +
      +
      • +
    • +
      +

      getChannelDensityNernst

      +
      public List<ChannelDensityNernst> getChannelDensityNernst()
      +
      Gets the value of the channelDensityNernst property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensityNernst property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensityNernst().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensityNernst

      +
      +
      • +
    • +
      +

      getChannelDensityGHK

      +
      public List<ChannelDensityGHK> getChannelDensityGHK()
      +
      Gets the value of the channelDensityGHK property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensityGHK property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensityGHK().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensityGHK

      +
      +
      • +
    • +
      +

      getChannelDensityGHK2

      +
      public List<ChannelDensityGHK2> getChannelDensityGHK2()
      +
      Gets the value of the channelDensityGHK2 property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensityGHK2 property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensityGHK2().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensityGHK2

      +
      +
      • +
    • +
      +

      getChannelDensityNonUniform

      +
      public List<ChannelDensityNonUniform> getChannelDensityNonUniform()
      +
      Gets the value of the channelDensityNonUniform property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensityNonUniform property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensityNonUniform().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensityNonUniform

      +
      +
      • +
    • +
      +

      getChannelDensityNonUniformNernst

      +
      public List<ChannelDensityNonUniformNernst> getChannelDensityNonUniformNernst()
      +
      Gets the value of the channelDensityNonUniformNernst property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensityNonUniformNernst property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensityNonUniformNernst().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensityNonUniformNernst

      +
      +
      • +
    • +
      +

      getChannelDensityNonUniformGHK

      +
      public List<ChannelDensityNonUniformGHK> getChannelDensityNonUniformGHK()
      +
      Gets the value of the channelDensityNonUniformGHK property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensityNonUniformGHK property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensityNonUniformGHK().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensityNonUniformGHK

      +
      +
      • +
    • +
      +

      getSpikeThresh

      +
      public List<SpikeThresh> getSpikeThresh()
      +
      Gets the value of the spikeThresh property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spikeThresh property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpikeThresh().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SpikeThresh

      +
      +
      • +
    • +
      +

      getSpecificCapacitance

      +
      public List<SpecificCapacitance> getSpecificCapacitance()
      +
      Gets the value of the specificCapacitance property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the specificCapacitance property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpecificCapacitance().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SpecificCapacitance

      +
      +
      • +
    • +
      +

      getInitMembPotential

      +
      public List<InitMembPotential> getInitMembPotential()
      +
      Gets the value of the initMembPotential property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the initMembPotential property. + +

      + For example, to add a new item, do as follows: + 

      +    getInitMembPotential().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + InitMembPotential

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/MembraneProperties2CaPools.html b/org/neuroml/model/MembraneProperties2CaPools.html new file mode 100644 index 00000000..9d4f1191 --- /dev/null +++ b/org/neuroml/model/MembraneProperties2CaPools.html @@ -0,0 +1,296 @@ + + + + +MembraneProperties2CaPools (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class MembraneProperties2CaPools

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.MembraneProperties +
org.neuroml.model.MembraneProperties2CaPools
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class MembraneProperties2CaPools +extends MembraneProperties +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Variant of membraneProperties with 2 independent Ca pools + + +

Java class for MembraneProperties2CaPools complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="MembraneProperties2CaPools">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}MembraneProperties">
+       <sequence>
+         <element name="channelDensityNernstCa2" type="{http://www.neuroml.org/schema/neuroml2}ChannelDensityNernstCa2" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      MembraneProperties2CaPools

      +
      public MembraneProperties2CaPools()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getChannelDensityNernstCa2

      +
      public List<ChannelDensityNernstCa2> getChannelDensityNernstCa2()
      +
      Gets the value of the channelDensityNernstCa2 property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the channelDensityNernstCa2 property. + +

      + For example, to add a new item, do as follows: + 

      +    getChannelDensityNernstCa2().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ChannelDensityNernstCa2

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class MembraneProperties
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class MembraneProperties
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class MembraneProperties
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Metric.html b/org/neuroml/model/Metric.html new file mode 100644 index 00000000..a11ed0f7 --- /dev/null +++ b/org/neuroml/model/Metric.html @@ -0,0 +1,243 @@ + + + + +Metric (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum Metric

+
+
java.lang.Object +
java.lang.Enum<Metric> +
org.neuroml.model.Metric
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<Metric>, java.lang.constant.Constable
+
+
+
public enum Metric +extends Enum<Metric>
+

Java class for Metric. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="Metric">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="Path Length from root"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      PATH_LENGTH_FROM_ROOT

      +
      public static final Metric PATH_LENGTH_FROM_ROOT
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static Metric[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static Metric valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static Metric fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Morphology.html b/org/neuroml/model/Morphology.html new file mode 100644 index 00000000..b1a0e648 --- /dev/null +++ b/org/neuroml/model/Morphology.html @@ -0,0 +1,343 @@ + + + + +Morphology (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Morphology

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.Morphology
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Morphology +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s + + +

Java class for Morphology complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Morphology">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="segment" type="{http://www.neuroml.org/schema/neuroml2}Segment" maxOccurs="unbounded"/>
+         <element name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}SegmentGroup" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Morphology

      +
      public Morphology()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSegment

      +
      public List<Segment> getSegment()
      +
      Gets the value of the segment property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the segment property. + +

      + For example, to add a new item, do as follows: + 

      +    getSegment().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Segment

      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public List<SegmentGroup> getSegmentGroup()
      +
      Gets the value of the segmentGroup property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the segmentGroup property. + +

      + For example, to add a new item, do as follows: + 

      +    getSegmentGroup().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SegmentGroup

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/NamedDimensionalType.html b/org/neuroml/model/NamedDimensionalType.html new file mode 100644 index 00000000..a0f9e951 --- /dev/null +++ b/org/neuroml/model/NamedDimensionalType.html @@ -0,0 +1,380 @@ + + + + +NamedDimensionalType (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class NamedDimensionalType

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalType
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
DerivedParameter, LEMSProperty, Parameter, Requirement
+
+
+
public class NamedDimensionalType +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for NamedDimensionalType complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="NamedDimensionalType">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="dimension" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      name

      +
      protected String name
      +
      +
      • +
    • +
      +

      dimension

      +
      protected String dimension
      +
      +
      • +
    • +
      +

      description

      +
      protected String description
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      NamedDimensionalType

      +
      public NamedDimensionalType()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getName

      +
      public String getName()
      +
      Gets the value of the name property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setName

      +
      public void setName(String value)
      +
      Sets the value of the name property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDimension

      +
      public String getDimension()
      +
      Gets the value of the dimension property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDimension

      +
      public void setDimension(String value)
      +
      Sets the value of the dimension property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDescription

      +
      public String getDescription()
      +
      Gets the value of the description property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDescription

      +
      public void setDescription(String value)
      +
      Sets the value of the description property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/NamedDimensionalVariable.html b/org/neuroml/model/NamedDimensionalVariable.html new file mode 100644 index 00000000..29954aeb --- /dev/null +++ b/org/neuroml/model/NamedDimensionalVariable.html @@ -0,0 +1,424 @@ + + + + +NamedDimensionalVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class NamedDimensionalVariable

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalVariable
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
ConditionalDerivedVariable, DerivedVariable, StateVariable
+
+
+
public class NamedDimensionalVariable +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for NamedDimensionalVariable complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="NamedDimensionalVariable">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="dimension" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="exposure" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      name

      +
      protected String name
      +
      +
      • +
    • +
      +

      dimension

      +
      protected String dimension
      +
      +
      • +
    • +
      +

      description

      +
      protected String description
      +
      +
      • +
    • +
      +

      exposure

      +
      protected String exposure
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      NamedDimensionalVariable

      +
      public NamedDimensionalVariable()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getName

      +
      public String getName()
      +
      Gets the value of the name property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setName

      +
      public void setName(String value)
      +
      Sets the value of the name property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDimension

      +
      public String getDimension()
      +
      Gets the value of the dimension property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDimension

      +
      public void setDimension(String value)
      +
      Sets the value of the dimension property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDescription

      +
      public String getDescription()
      +
      Gets the value of the description property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDescription

      +
      public void setDescription(String value)
      +
      Sets the value of the description property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getExposure

      +
      public String getExposure()
      +
      Gets the value of the exposure property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setExposure

      +
      public void setExposure(String value)
      +
      Sets the value of the exposure property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Network.html b/org/neuroml/model/Network.html new file mode 100644 index 00000000..349a731d --- /dev/null +++ b/org/neuroml/model/Network.html @@ -0,0 +1,826 @@ + + + + +Network (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Network

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.Network
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Network +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s. Note: often in NeuroML this will be of type **networkWithTemperature** if there are temperature dependent elements ( e. g. ion channels ). + + +

Java class for Network complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Network">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="space" type="{http://www.neuroml.org/schema/neuroml2}Space" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="region" type="{http://www.neuroml.org/schema/neuroml2}Region" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="extracellularProperties" type="{http://www.neuroml.org/schema/neuroml2}ExtracellularPropertiesLocal" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="population" type="{http://www.neuroml.org/schema/neuroml2}Population" maxOccurs="unbounded"/>
+         <element name="cellSet" type="{http://www.neuroml.org/schema/neuroml2}CellSet" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="synapticConnection" type="{http://www.neuroml.org/schema/neuroml2}SynapticConnection" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="projection" type="{http://www.neuroml.org/schema/neuroml2}Projection" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="electricalProjection" type="{http://www.neuroml.org/schema/neuroml2}ElectricalProjection" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="continuousProjection" type="{http://www.neuroml.org/schema/neuroml2}ContinuousProjection" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="explicitInput" type="{http://www.neuroml.org/schema/neuroml2}ExplicitInput" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="inputList" type="{http://www.neuroml.org/schema/neuroml2}InputList" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="type" type="{http://www.neuroml.org/schema/neuroml2}networkTypes" />
+       <attribute name="temperature" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_temperature" />
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Network

      +
      public Network()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSpace

      +
      public List<Space> getSpace()
      +
      Gets the value of the space property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the space property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpace().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Space

      +
      +
      • +
    • +
      +

      getRegion

      +
      public List<Region> getRegion()
      +
      Gets the value of the region property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the region property. + +

      + For example, to add a new item, do as follows: + 

      +    getRegion().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Region

      +
      +
      • +
    • +
      +

      getExtracellularProperties

      +
      public List<ExtracellularPropertiesLocal> getExtracellularProperties()
      +
      Gets the value of the extracellularProperties property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the extracellularProperties property. + +

      + For example, to add a new item, do as follows: + 

      +    getExtracellularProperties().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ExtracellularPropertiesLocal

      +
      +
      • +
    • +
      +

      getPopulation

      +
      public List<Population> getPopulation()
      +
      Gets the value of the population property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the population property. + +

      + For example, to add a new item, do as follows: + 

      +    getPopulation().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Population

      +
      +
      • +
    • +
      +

      getCellSet

      +
      public List<CellSet> getCellSet()
      +
      Gets the value of the cellSet property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the cellSet property. + +

      + For example, to add a new item, do as follows: + 

      +    getCellSet().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + CellSet

      +
      +
      • +
    • +
      +

      getSynapticConnection

      +
      public List<SynapticConnection> getSynapticConnection()
      +
      Gets the value of the synapticConnection property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the synapticConnection property. + +

      + For example, to add a new item, do as follows: + 

      +    getSynapticConnection().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SynapticConnection

      +
      +
      • +
    • +
      +

      getProjection

      +
      public List<Projection> getProjection()
      +
      Gets the value of the projection property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the projection property. + +

      + For example, to add a new item, do as follows: + 

      +    getProjection().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Projection

      +
      +
      • +
    • +
      +

      getElectricalProjection

      +
      public List<ElectricalProjection> getElectricalProjection()
      +
      Gets the value of the electricalProjection property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the electricalProjection property. + +

      + For example, to add a new item, do as follows: + 

      +    getElectricalProjection().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ElectricalProjection

      +
      +
      • +
    • +
      +

      getContinuousProjection

      +
      public List<ContinuousProjection> getContinuousProjection()
      +
      Gets the value of the continuousProjection property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the continuousProjection property. + +

      + For example, to add a new item, do as follows: + 

      +    getContinuousProjection().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ContinuousProjection

      +
      +
      • +
    • +
      +

      getExplicitInput

      +
      public List<ExplicitInput> getExplicitInput()
      +
      Gets the value of the explicitInput property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the explicitInput property. + +

      + For example, to add a new item, do as follows: + 

      +    getExplicitInput().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ExplicitInput

      +
      +
      • +
    • +
      +

      getInputList

      +
      public List<InputList> getInputList()
      +
      Gets the value of the inputList property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the inputList property. + +

      + For example, to add a new item, do as follows: + 

      +    getInputList().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + InputList

      +
      +
      • +
    • +
      +

      getType

      +
      public NetworkTypes getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + NetworkTypes
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(NetworkTypes value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + NetworkTypes
      +
      +
      +
      • +
    • +
      +

      getTemperature

      +
      public String getTemperature()
      +
      Gets the value of the temperature property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTemperature

      +
      public void setTemperature(String value)
      +
      Sets the value of the temperature property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/NetworkTypes.html b/org/neuroml/model/NetworkTypes.html new file mode 100644 index 00000000..b137fcc0 --- /dev/null +++ b/org/neuroml/model/NetworkTypes.html @@ -0,0 +1,252 @@ + + + + +NetworkTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum NetworkTypes

+
+
java.lang.Object +
java.lang.Enum<NetworkTypes> +
org.neuroml.model.NetworkTypes
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<NetworkTypes>, java.lang.constant.Constable
+
+
+
public enum NetworkTypes +extends Enum<NetworkTypes>
+

Java class for networkTypes. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="networkTypes">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="network"/>
+     <enumeration value="networkWithTemperature"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      NETWORK

      +
      public static final NetworkTypes NETWORK
      +
      +
      • +
    • +
      +

      NETWORK_WITH_TEMPERATURE

      +
      public static final NetworkTypes NETWORK_WITH_TEMPERATURE
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static NetworkTypes[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static NetworkTypes valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static NetworkTypes fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/NeuroMLDocument.html b/org/neuroml/model/NeuroMLDocument.html new file mode 100644 index 00000000..cad4af5b --- /dev/null +++ b/org/neuroml/model/NeuroMLDocument.html @@ -0,0 +1,2864 @@ + + + + +NeuroMLDocument (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class NeuroMLDocument

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.NeuroMLDocument
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class NeuroMLDocument +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for NeuroMLDocument complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="NeuroMLDocument">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="include" type="{http://www.neuroml.org/schema/neuroml2}IncludeType" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="extracellularProperties" type="{http://www.neuroml.org/schema/neuroml2}ExtracellularProperties" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="intracellularProperties" type="{http://www.neuroml.org/schema/neuroml2}IntracellularProperties" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="morphology" type="{http://www.neuroml.org/schema/neuroml2}Morphology" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="ionChannel" type="{http://www.neuroml.org/schema/neuroml2}IonChannel" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="ionChannelHH" type="{http://www.neuroml.org/schema/neuroml2}IonChannelHH" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="ionChannelVShift" type="{http://www.neuroml.org/schema/neuroml2}IonChannelVShift" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="ionChannelKS" type="{http://www.neuroml.org/schema/neuroml2}IonChannelKS" maxOccurs="unbounded" minOccurs="0"/>
+         <group ref="{http://www.neuroml.org/schema/neuroml2}ConcentrationModelTypes"/>
+         <group ref="{http://www.neuroml.org/schema/neuroml2}SynapseTypes"/>
+         <element name="biophysicalProperties" type="{http://www.neuroml.org/schema/neuroml2}BiophysicalProperties" maxOccurs="unbounded" minOccurs="0"/>
+         <group ref="{http://www.neuroml.org/schema/neuroml2}CellTypes"/>
+         <group ref="{http://www.neuroml.org/schema/neuroml2}InputTypes"/>
+         <group ref="{http://www.neuroml.org/schema/neuroml2}PyNNCellTypes"/>
+         <group ref="{http://www.neuroml.org/schema/neuroml2}PyNNSynapseTypes"/>
+         <group ref="{http://www.neuroml.org/schema/neuroml2}PyNNInputTypes"/>
+         <element name="network" type="{http://www.neuroml.org/schema/neuroml2}Network" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="ComponentType" type="{http://www.neuroml.org/schema/neuroml2}ComponentType" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      NeuroMLDocument

      +
      public NeuroMLDocument()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getInclude

      +
      public List<IncludeType> getInclude()
      +
      Gets the value of the include property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the include property. + +

      + For example, to add a new item, do as follows: + 

      +    getInclude().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IncludeType

      +
      +
      • +
    • +
      +

      getExtracellularProperties

      +
      public List<ExtracellularProperties> getExtracellularProperties()
      +
      Gets the value of the extracellularProperties property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the extracellularProperties property. + +

      + For example, to add a new item, do as follows: + 

      +    getExtracellularProperties().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ExtracellularProperties

      +
      +
      • +
    • +
      +

      getIntracellularProperties

      +
      public List<IntracellularProperties> getIntracellularProperties()
      +
      Gets the value of the intracellularProperties property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the intracellularProperties property. + +

      + For example, to add a new item, do as follows: + 

      +    getIntracellularProperties().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IntracellularProperties

      +
      +
      • +
    • +
      +

      getMorphology

      +
      public List<Morphology> getMorphology()
      +
      Gets the value of the morphology property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the morphology property. + +

      + For example, to add a new item, do as follows: + 

      +    getMorphology().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Morphology

      +
      +
      • +
    • +
      +

      getIonChannel

      +
      public List<IonChannel> getIonChannel()
      +
      Gets the value of the ionChannel property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the ionChannel property. + +

      + For example, to add a new item, do as follows: + 

      +    getIonChannel().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IonChannel

      +
      +
      • +
    • +
      +

      getIonChannelHH

      +
      public List<IonChannelHH> getIonChannelHH()
      +
      Gets the value of the ionChannelHH property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the ionChannelHH property. + +

      + For example, to add a new item, do as follows: + 

      +    getIonChannelHH().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IonChannelHH

      +
      +
      • +
    • +
      +

      getIonChannelVShift

      +
      public List<IonChannelVShift> getIonChannelVShift()
      +
      Gets the value of the ionChannelVShift property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the ionChannelVShift property. + +

      + For example, to add a new item, do as follows: + 

      +    getIonChannelVShift().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IonChannelVShift

      +
      +
      • +
    • +
      +

      getIonChannelKS

      +
      public List<IonChannelKS> getIonChannelKS()
      +
      Gets the value of the ionChannelKS property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the ionChannelKS property. + +

      + For example, to add a new item, do as follows: + 

      +    getIonChannelKS().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IonChannelKS

      +
      +
      • +
    • +
      +

      getDecayingPoolConcentrationModel

      +
      public List<DecayingPoolConcentrationModel> getDecayingPoolConcentrationModel()
      +
      Gets the value of the decayingPoolConcentrationModel property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the decayingPoolConcentrationModel property. + +

      + For example, to add a new item, do as follows: + 

      +    getDecayingPoolConcentrationModel().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + DecayingPoolConcentrationModel

      +
      +
      • +
    • +
      +

      getFixedFactorConcentrationModel

      +
      public List<FixedFactorConcentrationModel> getFixedFactorConcentrationModel()
      +
      Gets the value of the fixedFactorConcentrationModel property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the fixedFactorConcentrationModel property. + +

      + For example, to add a new item, do as follows: + 

      +    getFixedFactorConcentrationModel().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + FixedFactorConcentrationModel

      +
      +
      • +
    • +
      +

      getAlphaCurrentSynapse

      +
      public List<AlphaCurrentSynapse> getAlphaCurrentSynapse()
      +
      Gets the value of the alphaCurrentSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the alphaCurrentSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getAlphaCurrentSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + AlphaCurrentSynapse

      +
      +
      • +
    • +
      +

      getAlphaSynapse

      +
      public List<AlphaSynapse> getAlphaSynapse()
      +
      Gets the value of the alphaSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the alphaSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getAlphaSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + AlphaSynapse

      +
      +
      • +
    • +
      +

      getExpOneSynapse

      +
      public List<ExpOneSynapse> getExpOneSynapse()
      +
      Gets the value of the expOneSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the expOneSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getExpOneSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ExpOneSynapse

      +
      +
      • +
    • +
      +

      getExpTwoSynapse

      +
      public List<ExpTwoSynapse> getExpTwoSynapse()
      +
      Gets the value of the expTwoSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the expTwoSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getExpTwoSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ExpTwoSynapse

      +
      +
      • +
    • +
      +

      getExpThreeSynapse

      +
      public List<ExpThreeSynapse> getExpThreeSynapse()
      +
      Gets the value of the expThreeSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the expThreeSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getExpThreeSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ExpThreeSynapse

      +
      +
      • +
    • +
      +

      getBlockingPlasticSynapse

      +
      public List<BlockingPlasticSynapse> getBlockingPlasticSynapse()
      +
      Gets the value of the blockingPlasticSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the blockingPlasticSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getBlockingPlasticSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + BlockingPlasticSynapse

      +
      +
      • +
    • +
      +

      getDoubleSynapse

      +
      public List<DoubleSynapse> getDoubleSynapse()
      +
      Gets the value of the doubleSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the doubleSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getDoubleSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + DoubleSynapse

      +
      +
      • +
    • +
      +

      getGapJunction

      +
      public List<GapJunction> getGapJunction()
      +
      Gets the value of the gapJunction property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gapJunction property. + +

      + For example, to add a new item, do as follows: + 

      +    getGapJunction().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GapJunction

      +
      +
      • +
    • +
      +

      getSilentSynapse

      +
      public List<SilentSynapse> getSilentSynapse()
      +
      Gets the value of the silentSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the silentSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getSilentSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SilentSynapse

      +
      +
      • +
    • +
      +

      getLinearGradedSynapse

      +
      public List<LinearGradedSynapse> getLinearGradedSynapse()
      +
      Gets the value of the linearGradedSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the linearGradedSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getLinearGradedSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + LinearGradedSynapse

      +
      +
      • +
    • +
      +

      getGradedSynapse

      +
      public List<GradedSynapse> getGradedSynapse()
      +
      Gets the value of the gradedSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the gradedSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getGradedSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + GradedSynapse

      +
      +
      • +
    • +
      +

      getBiophysicalProperties

      +
      public List<BiophysicalProperties> getBiophysicalProperties()
      +
      Gets the value of the biophysicalProperties property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the biophysicalProperties property. + +

      + For example, to add a new item, do as follows: + 

      +    getBiophysicalProperties().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + BiophysicalProperties

      +
      +
      • +
    • +
      +

      getCell

      +
      public List<Cell> getCell()
      +
      Gets the value of the cell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the cell property. + +

      + For example, to add a new item, do as follows: + 

      +    getCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Cell

      +
      +
      • +
    • +
      +

      getCell2CaPools

      +
      public List<Cell2CaPools> getCell2CaPools()
      +
      Gets the value of the cell2CaPools property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the cell2CaPools property. + +

      + For example, to add a new item, do as follows: + 

      +    getCell2CaPools().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Cell2CaPools

      +
      +
      • +
    • +
      +

      getBaseCell

      +
      public List<BaseCell> getBaseCell()
      +
      Gets the value of the baseCell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the baseCell property. + +

      + For example, to add a new item, do as follows: + 

      +    getBaseCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + BaseCell

      +
      +
      • +
    • +
      +

      getIafTauCell

      +
      public List<IafTauCell> getIafTauCell()
      +
      Gets the value of the iafTauCell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the iafTauCell property. + +

      + For example, to add a new item, do as follows: + 

      +    getIafTauCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IafTauCell

      +
      +
      • +
    • +
      +

      getIafTauRefCell

      +
      public List<IafTauRefCell> getIafTauRefCell()
      +
      Gets the value of the iafTauRefCell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the iafTauRefCell property. + +

      + For example, to add a new item, do as follows: + 

      +    getIafTauRefCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IafTauRefCell

      +
      +
      • +
    • +
      +

      getIafCell

      +
      public List<IafCell> getIafCell()
      +
      Gets the value of the iafCell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the iafCell property. + +

      + For example, to add a new item, do as follows: + 

      +    getIafCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IafCell

      +
      +
      • +
    • +
      +

      getIafRefCell

      +
      public List<IafRefCell> getIafRefCell()
      +
      Gets the value of the iafRefCell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the iafRefCell property. + +

      + For example, to add a new item, do as follows: + 

      +    getIafRefCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IafRefCell

      +
      +
      • +
    • +
      +

      getIzhikevichCell

      +
      public List<IzhikevichCell> getIzhikevichCell()
      +
      Gets the value of the izhikevichCell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the izhikevichCell property. + +

      + For example, to add a new item, do as follows: + 

      +    getIzhikevichCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IzhikevichCell

      +
      +
      • +
    • +
      +

      getIzhikevich2007Cell

      +
      public List<Izhikevich2007Cell> getIzhikevich2007Cell()
      +
      Gets the value of the izhikevich2007Cell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the izhikevich2007Cell property. + +

      + For example, to add a new item, do as follows: + 

      +    getIzhikevich2007Cell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Izhikevich2007Cell

      +
      +
      • +
    • +
      +

      getAdExIaFCell

      +
      public List<AdExIaFCell> getAdExIaFCell()
      +
      Gets the value of the adExIaFCell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the adExIaFCell property. + +

      + For example, to add a new item, do as follows: + 

      +    getAdExIaFCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + AdExIaFCell

      +
      +
      • +
    • +
      +

      getFitzHughNagumoCell

      +
      public List<FitzHughNagumoCell> getFitzHughNagumoCell()
      +
      Gets the value of the fitzHughNagumoCell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the fitzHughNagumoCell property. + +

      + For example, to add a new item, do as follows: + 

      +    getFitzHughNagumoCell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + FitzHughNagumoCell

      +
      +
      • +
    • +
      +

      getFitzHughNagumo1969Cell

      +
      public List<FitzHughNagumo1969Cell> getFitzHughNagumo1969Cell()
      +
      Gets the value of the fitzHughNagumo1969Cell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the fitzHughNagumo1969Cell property. + +

      + For example, to add a new item, do as follows: + 

      +    getFitzHughNagumo1969Cell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + FitzHughNagumo1969Cell

      +
      +
      • +
    • +
      +

      getPinskyRinzelCA3Cell

      +
      public List<PinskyRinzelCA3Cell> getPinskyRinzelCA3Cell()
      +
      Gets the value of the pinskyRinzelCA3Cell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the pinskyRinzelCA3Cell property. + +

      + For example, to add a new item, do as follows: + 

      +    getPinskyRinzelCA3Cell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + PinskyRinzelCA3Cell

      +
      +
      • +
    • +
      +

      getHindmarshRose1984Cell

      +
      public List<HindmarshRose1984Cell> getHindmarshRose1984Cell()
      +
      Gets the value of the hindmarshRose1984Cell property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the hindmarshRose1984Cell property. + +

      + For example, to add a new item, do as follows: + 

      +    getHindmarshRose1984Cell().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + HindmarshRose1984Cell

      +
      +
      • +
    • +
      +

      getPulseGenerator

      +
      public List<PulseGenerator> getPulseGenerator()
      +
      Gets the value of the pulseGenerator property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the pulseGenerator property. + +

      + For example, to add a new item, do as follows: + 

      +    getPulseGenerator().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + PulseGenerator

      +
      +
      • +
    • +
      +

      getPulseGeneratorDL

      +
      public List<PulseGeneratorDL> getPulseGeneratorDL()
      +
      Gets the value of the pulseGeneratorDL property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the pulseGeneratorDL property. + +

      + For example, to add a new item, do as follows: + 

      +    getPulseGeneratorDL().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + PulseGeneratorDL

      +
      +
      • +
    • +
      +

      getSineGenerator

      +
      public List<SineGenerator> getSineGenerator()
      +
      Gets the value of the sineGenerator property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the sineGenerator property. + +

      + For example, to add a new item, do as follows: + 

      +    getSineGenerator().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SineGenerator

      +
      +
      • +
    • +
      +

      getSineGeneratorDL

      +
      public List<SineGeneratorDL> getSineGeneratorDL()
      +
      Gets the value of the sineGeneratorDL property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the sineGeneratorDL property. + +

      + For example, to add a new item, do as follows: + 

      +    getSineGeneratorDL().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SineGeneratorDL

      +
      +
      • +
    • +
      +

      getRampGenerator

      +
      public List<RampGenerator> getRampGenerator()
      +
      Gets the value of the rampGenerator property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the rampGenerator property. + +

      + For example, to add a new item, do as follows: + 

      +    getRampGenerator().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + RampGenerator

      +
      +
      • +
    • +
      +

      getRampGeneratorDL

      +
      public List<RampGeneratorDL> getRampGeneratorDL()
      +
      Gets the value of the rampGeneratorDL property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the rampGeneratorDL property. + +

      + For example, to add a new item, do as follows: + 

      +    getRampGeneratorDL().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + RampGeneratorDL

      +
      +
      • +
    • +
      +

      getCompoundInput

      +
      public List<CompoundInput> getCompoundInput()
      +
      Gets the value of the compoundInput property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the compoundInput property. + +

      + For example, to add a new item, do as follows: + 

      +    getCompoundInput().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + CompoundInput

      +
      +
      • +
    • +
      +

      getCompoundInputDL

      +
      public List<CompoundInputDL> getCompoundInputDL()
      +
      Gets the value of the compoundInputDL property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the compoundInputDL property. + +

      + For example, to add a new item, do as follows: + 

      +    getCompoundInputDL().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + CompoundInputDL

      +
      +
      • +
    • +
      +

      getVoltageClamp

      +
      public List<VoltageClamp> getVoltageClamp()
      +
      Gets the value of the voltageClamp property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the voltageClamp property. + +

      + For example, to add a new item, do as follows: + 

      +    getVoltageClamp().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + VoltageClamp

      +
      +
      • +
    • +
      +

      getVoltageClampTriple

      +
      public List<VoltageClampTriple> getVoltageClampTriple()
      +
      Gets the value of the voltageClampTriple property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the voltageClampTriple property. + +

      + For example, to add a new item, do as follows: + 

      +    getVoltageClampTriple().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + VoltageClampTriple

      +
      +
      • +
    • +
      +

      getSpikeArray

      +
      public List<SpikeArray> getSpikeArray()
      +
      Gets the value of the spikeArray property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spikeArray property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpikeArray().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SpikeArray

      +
      +
      • +
    • +
      +

      getTimedSynapticInput

      +
      public List<TimedSynapticInput> getTimedSynapticInput()
      +
      Gets the value of the timedSynapticInput property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the timedSynapticInput property. + +

      + For example, to add a new item, do as follows: + 

      +    getTimedSynapticInput().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + TimedSynapticInput

      +
      +
      • +
    • +
      +

      getSpikeGenerator

      +
      public List<SpikeGenerator> getSpikeGenerator()
      +
      Gets the value of the spikeGenerator property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spikeGenerator property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpikeGenerator().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SpikeGenerator

      +
      +
      • +
    • +
      +

      getSpikeGeneratorRandom

      +
      public List<SpikeGeneratorRandom> getSpikeGeneratorRandom()
      +
      Gets the value of the spikeGeneratorRandom property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spikeGeneratorRandom property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpikeGeneratorRandom().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SpikeGeneratorRandom

      +
      +
      • +
    • +
      +

      getSpikeGeneratorPoisson

      +
      public List<SpikeGeneratorPoisson> getSpikeGeneratorPoisson()
      +
      Gets the value of the spikeGeneratorPoisson property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spikeGeneratorPoisson property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpikeGeneratorPoisson().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SpikeGeneratorPoisson

      +
      +
      • +
    • +
      +

      getSpikeGeneratorRefPoisson

      +
      public List<SpikeGeneratorRefPoisson> getSpikeGeneratorRefPoisson()
      +
      Gets the value of the spikeGeneratorRefPoisson property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spikeGeneratorRefPoisson property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpikeGeneratorRefPoisson().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SpikeGeneratorRefPoisson

      +
      +
      • +
    • +
      +

      getPoissonFiringSynapse

      +
      public List<PoissonFiringSynapse> getPoissonFiringSynapse()
      +
      Gets the value of the poissonFiringSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the poissonFiringSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getPoissonFiringSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + PoissonFiringSynapse

      +
      +
      • +
    • +
      +

      getTransientPoissonFiringSynapse

      +
      public List<TransientPoissonFiringSynapse> getTransientPoissonFiringSynapse()
      +
      Gets the value of the transientPoissonFiringSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the transientPoissonFiringSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getTransientPoissonFiringSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + TransientPoissonFiringSynapse

      +
      +
      • +
    • +
      +

      getIFCurrAlpha

      +
      public List<IFCurrAlpha> getIFCurrAlpha()
      +
      Gets the value of the ifCurrAlpha property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the ifCurrAlpha property. + +

      + For example, to add a new item, do as follows: + 

      +    getIFCurrAlpha().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IFCurrAlpha

      +
      +
      • +
    • +
      +

      getIFCurrExp

      +
      public List<IFCurrExp> getIFCurrExp()
      +
      Gets the value of the ifCurrExp property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the ifCurrExp property. + +

      + For example, to add a new item, do as follows: + 

      +    getIFCurrExp().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IFCurrExp

      +
      +
      • +
    • +
      +

      getIFCondAlpha

      +
      public List<IFCondAlpha> getIFCondAlpha()
      +
      Gets the value of the ifCondAlpha property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the ifCondAlpha property. + +

      + For example, to add a new item, do as follows: + 

      +    getIFCondAlpha().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IFCondAlpha

      +
      +
      • +
    • +
      +

      getIFCondExp

      +
      public List<IFCondExp> getIFCondExp()
      +
      Gets the value of the ifCondExp property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the ifCondExp property. + +

      + For example, to add a new item, do as follows: + 

      +    getIFCondExp().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + IFCondExp

      +
      +
      • +
    • +
      +

      getEIFCondExpIsfaIsta

      +
      public List<EIFCondExpIsfaIsta> getEIFCondExpIsfaIsta()
      +
      Gets the value of the eifCondExpIsfaIsta property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the eifCondExpIsfaIsta property. + +

      + For example, to add a new item, do as follows: + 

      +    getEIFCondExpIsfaIsta().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + EIFCondExpIsfaIsta

      +
      +
      • +
    • +
      +

      getEIFCondAlphaIsfaIsta

      +
      public List<EIFCondAlphaIsfaIsta> getEIFCondAlphaIsfaIsta()
      +
      Gets the value of the eifCondAlphaIsfaIsta property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the eifCondAlphaIsfaIsta property. + +

      + For example, to add a new item, do as follows: + 

      +    getEIFCondAlphaIsfaIsta().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + EIFCondAlphaIsfaIsta

      +
      +
      • +
    • +
      +

      getHHCondExp

      +
      public List<HHCondExp> getHHCondExp()
      +
      Gets the value of the hhCondExp property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the hhCondExp property. + +

      + For example, to add a new item, do as follows: + 

      +    getHHCondExp().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + HHCondExp

      +
      +
      • +
    • +
      +

      getExpCondSynapse

      +
      public List<ExpCondSynapse> getExpCondSynapse()
      +
      Gets the value of the expCondSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the expCondSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getExpCondSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ExpCondSynapse

      +
      +
      • +
    • +
      +

      getAlphaCondSynapse

      +
      public List<AlphaCondSynapse> getAlphaCondSynapse()
      +
      Gets the value of the alphaCondSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the alphaCondSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getAlphaCondSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + AlphaCondSynapse

      +
      +
      • +
    • +
      +

      getExpCurrSynapse

      +
      public List<ExpCurrSynapse> getExpCurrSynapse()
      +
      Gets the value of the expCurrSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the expCurrSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getExpCurrSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ExpCurrSynapse

      +
      +
      • +
    • +
      +

      getAlphaCurrSynapse

      +
      public List<AlphaCurrSynapse> getAlphaCurrSynapse()
      +
      Gets the value of the alphaCurrSynapse property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the alphaCurrSynapse property. + +

      + For example, to add a new item, do as follows: + 

      +    getAlphaCurrSynapse().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + AlphaCurrSynapse

      +
      +
      • +
    • +
      +

      getSpikeSourcePoisson

      +
      public List<SpikeSourcePoisson> getSpikeSourcePoisson()
      +
      Gets the value of the spikeSourcePoisson property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spikeSourcePoisson property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpikeSourcePoisson().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SpikeSourcePoisson

      +
      +
      • +
    • +
      +

      getNetwork

      +
      public List<Network> getNetwork()
      +
      Gets the value of the network property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the network property. + +

      + For example, to add a new item, do as follows: + 

      +    getNetwork().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Network

      +
      +
      • +
    • +
      +

      getComponentType

      +
      public List<ComponentType> getComponentType()
      +
      Gets the value of the componentType property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the componentType property. + +

      + For example, to add a new item, do as follows: + 

      +    getComponentType().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ComponentType

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ObjectFactory.html b/org/neuroml/model/ObjectFactory.html new file mode 100644 index 00000000..a4c6e1bb --- /dev/null +++ b/org/neuroml/model/ObjectFactory.html @@ -0,0 +1,2574 @@ + + + + +ObjectFactory (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ObjectFactory

+
+
java.lang.Object +
org.neuroml.model.ObjectFactory
+
+
+
+
public class ObjectFactory +extends Object
+
This object contains factory methods for each + Java content interface and Java element interface + generated in the org.neuroml.model package. +

An ObjectFactory allows you to programatically + construct new instances of the Java representation + for XML content. The Java representation of XML + content can consist of schema derived interfaces + and classes representing the binding of schema + type definitions, element declarations and model + groups. Factory methods for each of these are + provided in this class.

+
+
+ +
+
+ +
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/OnCondition.html b/org/neuroml/model/OnCondition.html new file mode 100644 index 00000000..1f158cc2 --- /dev/null +++ b/org/neuroml/model/OnCondition.html @@ -0,0 +1,406 @@ + + + + +OnCondition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class OnCondition

+
+
java.lang.Object +
org.neuroml.model.OnCondition
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class OnCondition +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for OnCondition complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="OnCondition">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <sequence>
+         <element name="StateAssignment" type="{http://www.neuroml.org/schema/neuroml2}StateAssignment" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="EventOut" type="{http://www.neuroml.org/schema/neuroml2}EventOut" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="Transition" type="{http://www.neuroml.org/schema/neuroml2}Transition" minOccurs="0"/>
+       </sequence>
+       <attribute name="test" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      OnCondition

      +
      public OnCondition()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getStateAssignment

      +
      public List<StateAssignment> getStateAssignment()
      +
      Gets the value of the stateAssignment property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the stateAssignment property. + +

      + For example, to add a new item, do as follows: + 

      +    getStateAssignment().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + StateAssignment

      +
      +
      • +
    • +
      +

      getEventOut

      +
      public List<EventOut> getEventOut()
      +
      Gets the value of the eventOut property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the eventOut property. + +

      + For example, to add a new item, do as follows: + 

      +    getEventOut().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + EventOut

      +
      +
      • +
    • +
      +

      getTransition

      +
      public Transition getTransition()
      +
      Gets the value of the transition property.
      +
      +
      Returns:
      +
      possible object is + Transition
      +
      +
      +
      • +
    • +
      +

      setTransition

      +
      public void setTransition(Transition value)
      +
      Sets the value of the transition property.
      +
      +
      Parameters:
      +
      value - allowed object is + Transition
      +
      +
      +
      • +
    • +
      +

      getTest

      +
      public String getTest()
      +
      Gets the value of the test property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTest

      +
      public void setTest(String value)
      +
      Sets the value of the test property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/OnEntry.html b/org/neuroml/model/OnEntry.html new file mode 100644 index 00000000..ce886f6d --- /dev/null +++ b/org/neuroml/model/OnEntry.html @@ -0,0 +1,279 @@ + + + + +OnEntry (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class OnEntry

+
+
java.lang.Object +
org.neuroml.model.OnEntry
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class OnEntry +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for OnEntry complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="OnEntry">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <sequence>
+         <element name="StateAssignment" type="{http://www.neuroml.org/schema/neuroml2}StateAssignment" maxOccurs="unbounded"/>
+       </sequence>
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      OnEntry

      +
      public OnEntry()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getStateAssignment

      +
      public List<StateAssignment> getStateAssignment()
      +
      Gets the value of the stateAssignment property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the stateAssignment property. + +

      + For example, to add a new item, do as follows: + 

      +    getStateAssignment().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + StateAssignment

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/OnEvent.html b/org/neuroml/model/OnEvent.html new file mode 100644 index 00000000..00968ae8 --- /dev/null +++ b/org/neuroml/model/OnEvent.html @@ -0,0 +1,362 @@ + + + + +OnEvent (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class OnEvent

+
+
java.lang.Object +
org.neuroml.model.OnEvent
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class OnEvent +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for OnEvent complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="OnEvent">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <sequence>
+         <element name="StateAssignment" type="{http://www.neuroml.org/schema/neuroml2}StateAssignment" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="EventOut" type="{http://www.neuroml.org/schema/neuroml2}EventOut" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="port" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      OnEvent

      +
      public OnEvent()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getStateAssignment

      +
      public List<StateAssignment> getStateAssignment()
      +
      Gets the value of the stateAssignment property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the stateAssignment property. + +

      + For example, to add a new item, do as follows: + 

      +    getStateAssignment().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + StateAssignment

      +
      +
      • +
    • +
      +

      getEventOut

      +
      public List<EventOut> getEventOut()
      +
      Gets the value of the eventOut property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the eventOut property. + +

      + For example, to add a new item, do as follows: + 

      +    getEventOut().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + EventOut

      +
      +
      • +
    • +
      +

      getPort

      +
      public String getPort()
      +
      Gets the value of the port property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPort

      +
      public void setPort(String value)
      +
      Sets the value of the port property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/OnStart.html b/org/neuroml/model/OnStart.html new file mode 100644 index 00000000..1e68de9d --- /dev/null +++ b/org/neuroml/model/OnStart.html @@ -0,0 +1,279 @@ + + + + +OnStart (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class OnStart

+
+
java.lang.Object +
org.neuroml.model.OnStart
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class OnStart +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for OnStart complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="OnStart">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <sequence>
+         <element name="StateAssignment" type="{http://www.neuroml.org/schema/neuroml2}StateAssignment" maxOccurs="unbounded"/>
+       </sequence>
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      OnStart

      +
      public OnStart()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getStateAssignment

      +
      public List<StateAssignment> getStateAssignment()
      +
      Gets the value of the stateAssignment property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the stateAssignment property. + +

      + For example, to add a new item, do as follows: + 

      +    getStateAssignment().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + StateAssignment

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/OpenState.html b/org/neuroml/model/OpenState.html new file mode 100644 index 00000000..40d365e1 --- /dev/null +++ b/org/neuroml/model/OpenState.html @@ -0,0 +1,245 @@ + + + + +OpenState (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class OpenState

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.OpenState
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class OpenState +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A **KSState** with **relativeConductance** of 1 + \n + :param relativeConductance: + :type relativeConductance: none + + + +

Java class for OpenState complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="OpenState">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      OpenState

      +
      public OpenState()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Parameter.html b/org/neuroml/model/Parameter.html new file mode 100644 index 00000000..9c520265 --- /dev/null +++ b/org/neuroml/model/Parameter.html @@ -0,0 +1,238 @@ + + + + +Parameter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Parameter

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalType +
org.neuroml.model.Parameter
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Parameter +extends NamedDimensionalType +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for Parameter complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Parameter">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}NamedDimensionalType">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Parameter

      +
      public Parameter()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class NamedDimensionalType
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class NamedDimensionalType
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class NamedDimensionalType
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Path.html b/org/neuroml/model/Path.html new file mode 100644 index 00000000..e96ad9f3 --- /dev/null +++ b/org/neuroml/model/Path.html @@ -0,0 +1,337 @@ + + + + +Path (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Path

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Path
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Path +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Include all the **segment** s between those specified by **from** and **to** , inclusive + + +

Java class for Path complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Path">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <sequence>
+         <element name="from" type="{http://www.neuroml.org/schema/neuroml2}SegmentEndPoint" minOccurs="0"/>
+         <element name="to" type="{http://www.neuroml.org/schema/neuroml2}SegmentEndPoint" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Path

      +
      public Path()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getFrom

      +
      public SegmentEndPoint getFrom()
      +
      Gets the value of the from property.
      +
      +
      Returns:
      +
      possible object is + SegmentEndPoint
      +
      +
      +
      • +
    • +
      +

      setFrom

      +
      public void setFrom(SegmentEndPoint value)
      +
      Sets the value of the from property.
      +
      +
      Parameters:
      +
      value - allowed object is + SegmentEndPoint
      +
      +
      +
      • +
    • +
      +

      getTo

      +
      public SegmentEndPoint getTo()
      +
      Gets the value of the to property.
      +
      +
      Returns:
      +
      possible object is + SegmentEndPoint
      +
      +
      +
      • +
    • +
      +

      setTo

      +
      public void setTo(SegmentEndPoint value)
      +
      Sets the value of the to property.
      +
      +
      Parameters:
      +
      value - allowed object is + SegmentEndPoint
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/PinskyRinzelCA3Cell.html b/org/neuroml/model/PinskyRinzelCA3Cell.html new file mode 100644 index 00000000..4a8f7e65 --- /dev/null +++ b/org/neuroml/model/PinskyRinzelCA3Cell.html @@ -0,0 +1,1239 @@ + + + + +PinskyRinzelCA3Cell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class PinskyRinzelCA3Cell

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseCell +
org.neuroml.model.PinskyRinzelCA3Cell
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class PinskyRinzelCA3Cell +extends BaseCell +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Reduced CA3 cell model from Pinsky, P. F. , Rinzel, J. Intrinsic and network rhythmogenesis in a reduced traub model for CA3 neurons. J Comput Neurosci 1, 39-60 ( 1994 ). See https://github.com/OpenSourceBrain/PinskyRinzelModel + \n + :param iSoma: + :type iSoma: currentDensity + :param iDend: + :type iDend: currentDensity + :param gLs: + :type gLs: conductanceDensity + :param gLd: + :type gLd: conductanceDensity + :param gNa: + :type gNa: conductanceDensity + :param gKdr: + :type gKdr: conductanceDensity + :param gCa: + :type gCa: conductanceDensity + :param gKahp: + :type gKahp: conductanceDensity + :param gKC: + :type gKC: conductanceDensity + :param gc: + :type gc: conductanceDensity + :param eNa: + :type eNa: voltage + :param eCa: + :type eCa: voltage + :param eK: + :type eK: voltage + :param eL: + :type eL: voltage + :param pp: + :type pp: none + :param cm: + :type cm: specificCapacitance + :param alphac: + :type alphac: none + :param betac: + :type betac: none + :param gNmda: + :type gNmda: conductanceDensity + :param gAmpa: + :type gAmpa: conductanceDensity + :param qd0: + :type qd0: none + + + +

Java class for PinskyRinzelCA3Cell complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="PinskyRinzelCA3Cell">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseCell">
+       <attribute name="iSoma" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_currentDensity" />
+       <attribute name="iDend" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_currentDensity" />
+       <attribute name="gc" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gLs" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gLd" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gNa" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gKdr" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gCa" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gKahp" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gKC" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gNmda" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="gAmpa" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_conductanceDensity" />
+       <attribute name="eNa" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="eCa" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="eK" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="eL" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="qd0" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="pp" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="alphac" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="betac" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="cm" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_specificCapacitance" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      iSoma

      +
      protected String iSoma
      +
      +
      • +
    • +
      +

      iDend

      +
      protected String iDend
      +
      +
      • +
    • +
      +

      gc

      +
      protected String gc
      +
      +
      • +
    • +
      +

      gLs

      +
      protected String gLs
      +
      +
      • +
    • +
      +

      gLd

      +
      protected String gLd
      +
      +
      • +
    • +
      +

      gNa

      +
      protected String gNa
      +
      +
      • +
    • +
      +

      gKdr

      +
      protected String gKdr
      +
      +
      • +
    • +
      +

      gCa

      +
      protected String gCa
      +
      +
      • +
    • +
      +

      gKahp

      +
      protected String gKahp
      +
      +
      • +
    • +
      +

      gkc

      +
      protected String gkc
      +
      +
      • +
    • +
      +

      gNmda

      +
      protected String gNmda
      +
      +
      • +
    • +
      +

      gAmpa

      +
      protected String gAmpa
      +
      +
      • +
    • +
      +

      eNa

      +
      protected String eNa
      +
      +
      • +
    • +
      +

      eCa

      +
      protected String eCa
      +
      +
      • +
    • +
      +

      ek

      +
      protected String ek
      +
      +
      • +
    • +
      +

      el

      +
      protected String el
      +
      +
      • +
    • +
      +

      qd0

      +
      protected String qd0
      +
      +
      • +
    • +
      +

      pp

      +
      protected String pp
      +
      +
      • +
    • +
      +

      alphac

      +
      protected String alphac
      +
      +
      • +
    • +
      +

      betac

      +
      protected String betac
      +
      +
      • +
    • +
      +

      cm

      +
      protected String cm
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      PinskyRinzelCA3Cell

      +
      public PinskyRinzelCA3Cell()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getISoma

      +
      public String getISoma()
      +
      Gets the value of the iSoma property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setISoma

      +
      public void setISoma(String value)
      +
      Sets the value of the iSoma property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIDend

      +
      public String getIDend()
      +
      Gets the value of the iDend property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIDend

      +
      public void setIDend(String value)
      +
      Sets the value of the iDend property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGc

      +
      public String getGc()
      +
      Gets the value of the gc property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGc

      +
      public void setGc(String value)
      +
      Sets the value of the gc property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGLs

      +
      public String getGLs()
      +
      Gets the value of the gLs property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGLs

      +
      public void setGLs(String value)
      +
      Sets the value of the gLs property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGLd

      +
      public String getGLd()
      +
      Gets the value of the gLd property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGLd

      +
      public void setGLd(String value)
      +
      Sets the value of the gLd property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGNa

      +
      public String getGNa()
      +
      Gets the value of the gNa property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGNa

      +
      public void setGNa(String value)
      +
      Sets the value of the gNa property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGKdr

      +
      public String getGKdr()
      +
      Gets the value of the gKdr property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGKdr

      +
      public void setGKdr(String value)
      +
      Sets the value of the gKdr property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGCa

      +
      public String getGCa()
      +
      Gets the value of the gCa property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGCa

      +
      public void setGCa(String value)
      +
      Sets the value of the gCa property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGKahp

      +
      public String getGKahp()
      +
      Gets the value of the gKahp property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGKahp

      +
      public void setGKahp(String value)
      +
      Sets the value of the gKahp property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGKC

      +
      public String getGKC()
      +
      Gets the value of the gkc property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGKC

      +
      public void setGKC(String value)
      +
      Sets the value of the gkc property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGNmda

      +
      public String getGNmda()
      +
      Gets the value of the gNmda property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGNmda

      +
      public void setGNmda(String value)
      +
      Sets the value of the gNmda property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getGAmpa

      +
      public String getGAmpa()
      +
      Gets the value of the gAmpa property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setGAmpa

      +
      public void setGAmpa(String value)
      +
      Sets the value of the gAmpa property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getENa

      +
      public String getENa()
      +
      Gets the value of the eNa property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setENa

      +
      public void setENa(String value)
      +
      Sets the value of the eNa property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getECa

      +
      public String getECa()
      +
      Gets the value of the eCa property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setECa

      +
      public void setECa(String value)
      +
      Sets the value of the eCa property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getEK

      +
      public String getEK()
      +
      Gets the value of the ek property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setEK

      +
      public void setEK(String value)
      +
      Sets the value of the ek property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getEL

      +
      public String getEL()
      +
      Gets the value of the el property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setEL

      +
      public void setEL(String value)
      +
      Sets the value of the el property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQd0

      +
      public String getQd0()
      +
      Gets the value of the qd0 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setQd0

      +
      public void setQd0(String value)
      +
      Sets the value of the qd0 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPp

      +
      public String getPp()
      +
      Gets the value of the pp property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPp

      +
      public void setPp(String value)
      +
      Sets the value of the pp property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getAlphac

      +
      public String getAlphac()
      +
      Gets the value of the alphac property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setAlphac

      +
      public void setAlphac(String value)
      +
      Sets the value of the alphac property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getBetac

      +
      public String getBetac()
      +
      Gets the value of the betac property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setBetac

      +
      public void setBetac(String value)
      +
      Sets the value of the betac property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getCm

      +
      public String getCm()
      +
      Gets the value of the cm property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setCm

      +
      public void setCm(String value)
      +
      Sets the value of the cm property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseCell
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseCell
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseCell
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/PlasticityMechanism.html b/org/neuroml/model/PlasticityMechanism.html new file mode 100644 index 00000000..6c771581 --- /dev/null +++ b/org/neuroml/model/PlasticityMechanism.html @@ -0,0 +1,410 @@ + + + + +PlasticityMechanism (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class PlasticityMechanism

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.PlasticityMechanism
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class PlasticityMechanism +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for PlasticityMechanism complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="PlasticityMechanism">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="type" use="required" type="{http://www.neuroml.org/schema/neuroml2}PlasticityTypes" />
+       <attribute name="initReleaseProb" use="required" type="{http://www.neuroml.org/schema/neuroml2}ZeroToOne" />
+       <attribute name="tauRec" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="tauFac" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      type

      +
      protected PlasticityTypes type
      +
      +
      • +
    • +
      +

      initReleaseProb

      +
      protected float initReleaseProb
      +
      +
      • +
    • +
      +

      tauRec

      +
      protected String tauRec
      +
      +
      • +
    • +
      +

      tauFac

      +
      protected String tauFac
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      PlasticityMechanism

      +
      public PlasticityMechanism()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getType

      +
      public PlasticityTypes getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + PlasticityTypes
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(PlasticityTypes value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + PlasticityTypes
      +
      +
      +
      • +
    • +
      +

      getInitReleaseProb

      +
      public float getInitReleaseProb()
      +
      Gets the value of the initReleaseProb property.
      +
      +
      • +
    • +
      +

      setInitReleaseProb

      +
      public void setInitReleaseProb(float value)
      +
      Sets the value of the initReleaseProb property.
      +
      +
      • +
    • +
      +

      getTauRec

      +
      public String getTauRec()
      +
      Gets the value of the tauRec property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauRec

      +
      public void setTauRec(String value)
      +
      Sets the value of the tauRec property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTauFac

      +
      public String getTauFac()
      +
      Gets the value of the tauFac property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTauFac

      +
      public void setTauFac(String value)
      +
      Sets the value of the tauFac property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/PlasticityTypes.html b/org/neuroml/model/PlasticityTypes.html new file mode 100644 index 00000000..baa5ed49 --- /dev/null +++ b/org/neuroml/model/PlasticityTypes.html @@ -0,0 +1,252 @@ + + + + +PlasticityTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum PlasticityTypes

+
+
java.lang.Object +
java.lang.Enum<PlasticityTypes> +
org.neuroml.model.PlasticityTypes
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<PlasticityTypes>, java.lang.constant.Constable
+
+
+
public enum PlasticityTypes +extends Enum<PlasticityTypes>
+

Java class for PlasticityTypes. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="PlasticityTypes">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="tsodyksMarkramDepMechanism"/>
+     <enumeration value="tsodyksMarkramDepFacMechanism"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      TSODYKS_MARKRAM_DEP_MECHANISM

      +
      public static final PlasticityTypes TSODYKS_MARKRAM_DEP_MECHANISM
      +
      +
      • +
    • +
      +

      TSODYKS_MARKRAM_DEP_FAC_MECHANISM

      +
      public static final PlasticityTypes TSODYKS_MARKRAM_DEP_FAC_MECHANISM
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static PlasticityTypes[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static PlasticityTypes valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static PlasticityTypes fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Point3DWithDiam.html b/org/neuroml/model/Point3DWithDiam.html new file mode 100644 index 00000000..3a05c4f0 --- /dev/null +++ b/org/neuroml/model/Point3DWithDiam.html @@ -0,0 +1,393 @@ + + + + +Point3DWithDiam (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Point3DWithDiam

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Point3DWithDiam
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Point3DWithDiam +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ). This is due to micrometers being the default option for the majority of neuronal morphology formats, and dimensions are omitted here to facilitate reading and writing of morphologies in NeuroML. + \n + :param x: x coordinate of the point. Note: no dimension used, see description of **point3DWithDiam** for details. + :type x: none + :param y: y coordinate of the ppoint. Note: no dimension used, see description of **point3DWithDiam** for details. + :type y: none + :param z: z coordinate of the ppoint. Note: no dimension used, see description of **point3DWithDiam** for details. + :type z: none + :param diameter: Diameter of the ppoint. Note: no dimension used, see description of **point3DWithDiam** for details. + :type diameter: none + + + +

Java class for Point3DWithDiam complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Point3DWithDiam">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
+       <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
+       <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
+       <attribute name="diameter" use="required" type="{http://www.neuroml.org/schema/neuroml2}DoubleGreaterThanZero" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+
    + +
  • +
    +

    Field Summary

    +
    Fields
    +
    +
    Modifier and Type
    +
    Field
    +
    Description
    +
    protected double
    +
    diameter
    +
     
    +
    protected double
    +
    x
    +
     
    +
    protected double
    +
    y
    +
     
    +
    protected double
    +
    z
    +
     
    +
    +
    +
    • + +
  • +
    +

    Constructor Summary

    +
    Constructors
    +
    +
    Constructor
    +
    Description
    +
    Point3DWithDiam()
    +
     
    +
    +
    +
    • + +
  • +
    +

    Method Summary

    +
    +
    +
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    StringBuilder
    +
    append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
    +
     
    +
    StringBuilder
    +
    appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
    +
     
    +
    double
    +
    getDiameter()
    +
    +
    Gets the value of the diameter property.
    +
    +
    double
    +
    getX()
    +
    +
    Gets the value of the x property.
    +
    +
    double
    +
    getY()
    +
    +
    Gets the value of the y property.
    +
    +
    double
    +
    getZ()
    +
    +
    Gets the value of the z property.
    +
    +
    void
    +
    setDiameter(double value)
    +
    +
    Sets the value of the diameter property.
    +
    +
    void
    +
    setX(double value)
    +
    +
    Sets the value of the x property.
    +
    +
    void
    +
    setY(double value)
    +
    +
    Sets the value of the y property.
    +
    +
    void
    +
    setZ(double value)
    +
    +
    Sets the value of the z property.
    +
    +
    String
    +
    toString()
    +
     
    +
    +
    +
    +
    +

    Methods inherited from class java.lang.Object

    +clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
    +
    +
    • +
+
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      x

      +
      protected double x
      +
      +
      • +
    • +
      +

      y

      +
      protected double y
      +
      +
      • +
    • +
      +

      z

      +
      protected double z
      +
      +
      • +
    • +
      +

      diameter

      +
      protected double diameter
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Point3DWithDiam

      +
      public Point3DWithDiam()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getX

      +
      public double getX()
      +
      Gets the value of the x property.
      +
      +
      • +
    • +
      +

      setX

      +
      public void setX(double value)
      +
      Sets the value of the x property.
      +
      +
      • +
    • +
      +

      getY

      +
      public double getY()
      +
      Gets the value of the y property.
      +
      +
      • +
    • +
      +

      setY

      +
      public void setY(double value)
      +
      Sets the value of the y property.
      +
      +
      • +
    • +
      +

      getZ

      +
      public double getZ()
      +
      Gets the value of the z property.
      +
      +
      • +
    • +
      +

      setZ

      +
      public void setZ(double value)
      +
      Sets the value of the z property.
      +
      +
      • +
    • +
      +

      getDiameter

      +
      public double getDiameter()
      +
      Gets the value of the diameter property.
      +
      +
      • +
    • +
      +

      setDiameter

      +
      public void setDiameter(double value)
      +
      Sets the value of the diameter property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/PoissonFiringSynapse.html b/org/neuroml/model/PoissonFiringSynapse.html new file mode 100644 index 00000000..409cce2d --- /dev/null +++ b/org/neuroml/model/PoissonFiringSynapse.html @@ -0,0 +1,399 @@ + + + + +PoissonFiringSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class PoissonFiringSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.PoissonFiringSynapse
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class PoissonFiringSynapse +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current. See also **transientPoissonFiringSynapse** . + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time + + + +

Java class for PoissonFiringSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="PoissonFiringSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="averageRate" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_pertime" />
+       <attribute name="synapse" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="spikeTarget" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      averageRate

      +
      protected String averageRate
      +
      +
      • +
    • +
      +

      synapse

      +
      protected String synapse
      +
      +
      • +
    • +
      +

      spikeTarget

      +
      protected String spikeTarget
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      PoissonFiringSynapse

      +
      public PoissonFiringSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAverageRate

      +
      public String getAverageRate()
      +
      Gets the value of the averageRate property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setAverageRate

      +
      public void setAverageRate(String value)
      +
      Sets the value of the averageRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSynapse

      +
      public String getSynapse()
      +
      Gets the value of the synapse property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse

      +
      public void setSynapse(String value)
      +
      Sets the value of the synapse property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSpikeTarget

      +
      public String getSpikeTarget()
      +
      Gets the value of the spikeTarget property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSpikeTarget

      +
      public void setSpikeTarget(String value)
      +
      Sets the value of the spikeTarget property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Population.html b/org/neuroml/model/Population.html new file mode 100644 index 00000000..4e708f9c --- /dev/null +++ b/org/neuroml/model/Population.html @@ -0,0 +1,572 @@ + + + + +Population (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Population

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.Population
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Population +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A population of components, with just one parameter for the **size,** i. e. number of components to create. Note: quite often this is used with type= **populationList** which means the size is determined by the number of **instance** s ( with **location** s ) in the list. The **size** attribute is still set, and there will be a validation error if this does not match the number in the list. + \n + :param size: Number of instances of this Component to create when the population is instantiated + :type size: none + + + +

Java class for Population complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Population">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <choice>
+         <element name="layout" type="{http://www.neuroml.org/schema/neuroml2}Layout" minOccurs="0"/>
+         <element name="instance" type="{http://www.neuroml.org/schema/neuroml2}Instance" maxOccurs="unbounded"/>
+       </choice>
+       <attribute name="component" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="size" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+       <attribute name="type" type="{http://www.neuroml.org/schema/neuroml2}populationTypes" />
+       <attribute name="extracellularProperties" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      layout

      +
      protected Layout layout
      +
      +
      • +
    • +
      +

      instance

      +
      protected List<Instance> instance
      +
      +
      • +
    • +
      +

      component

      +
      protected String component
      +
      +
      • +
    • +
      +

      size

      +
      protected Integer size
      +
      +
      • +
    • +
      +

      type

      +
      protected PopulationTypes type
      +
      +
      • +
    • +
      +

      extracellularProperties

      +
      protected String extracellularProperties
      +
      +
      • +
    • +
      +

      neuroLexId

      +
      protected String neuroLexId
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Population

      +
      public Population()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getLayout

      +
      public Layout getLayout()
      +
      Gets the value of the layout property.
      +
      +
      Returns:
      +
      possible object is + Layout
      +
      +
      +
      • +
    • +
      +

      setLayout

      +
      public void setLayout(Layout value)
      +
      Sets the value of the layout property.
      +
      +
      Parameters:
      +
      value - allowed object is + Layout
      +
      +
      +
      • +
    • +
      +

      getInstance

      +
      public List<Instance> getInstance()
      +
      Gets the value of the instance property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the instance property. + +

      + For example, to add a new item, do as follows: + 

      +    getInstance().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Instance

      +
      +
      • +
    • +
      +

      getComponent

      +
      public String getComponent()
      +
      Gets the value of the component property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setComponent

      +
      public void setComponent(String value)
      +
      Sets the value of the component property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSize

      +
      public Integer getSize()
      +
      Gets the value of the size property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSize

      +
      public void setSize(Integer value)
      +
      Sets the value of the size property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getType

      +
      public PopulationTypes getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + PopulationTypes
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(PopulationTypes value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + PopulationTypes
      +
      +
      +
      • +
    • +
      +

      getExtracellularProperties

      +
      public String getExtracellularProperties()
      +
      Gets the value of the extracellularProperties property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setExtracellularProperties

      +
      public void setExtracellularProperties(String value)
      +
      Sets the value of the extracellularProperties property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/PopulationTypes.html b/org/neuroml/model/PopulationTypes.html new file mode 100644 index 00000000..1d5ecf08 --- /dev/null +++ b/org/neuroml/model/PopulationTypes.html @@ -0,0 +1,252 @@ + + + + +PopulationTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum PopulationTypes

+
+
java.lang.Object +
java.lang.Enum<PopulationTypes> +
org.neuroml.model.PopulationTypes
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<PopulationTypes>, java.lang.constant.Constable
+
+
+
public enum PopulationTypes +extends Enum<PopulationTypes>
+

Java class for populationTypes. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="populationTypes">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="population"/>
+     <enumeration value="populationList"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      POPULATION

      +
      public static final PopulationTypes POPULATION
      +
      +
      • +
    • +
      +

      POPULATION_LIST

      +
      public static final PopulationTypes POPULATION_LIST
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static PopulationTypes[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static PopulationTypes valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static PopulationTypes fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Projection.html b/org/neuroml/model/Projection.html new file mode 100644 index 00000000..66a814a5 --- /dev/null +++ b/org/neuroml/model/Projection.html @@ -0,0 +1,387 @@ + + + + +Projection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Projection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.BaseProjection +
org.neuroml.model.Projection
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Projection +extends BaseProjection +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements. + + +

Java class for Projection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Projection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseProjection">
+       <sequence>
+         <element name="connection" type="{http://www.neuroml.org/schema/neuroml2}Connection" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="connectionWD" type="{http://www.neuroml.org/schema/neuroml2}ConnectionWD" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="synapse" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Projection

      +
      public Projection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getConnection

      +
      public List<Connection> getConnection()
      +
      Gets the value of the connection property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the connection property. + +

      + For example, to add a new item, do as follows: + 

      +    getConnection().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Connection

      +
      +
      • +
    • +
      +

      getConnectionWD

      +
      public List<ConnectionWD> getConnectionWD()
      +
      Gets the value of the connectionWD property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the connectionWD property. + +

      + For example, to add a new item, do as follows: + 

      +    getConnectionWD().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + ConnectionWD

      +
      +
      • +
    • +
      +

      getSynapse

      +
      public String getSynapse()
      +
      Gets the value of the synapse property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse

      +
      public void setSynapse(String value)
      +
      Sets the value of the synapse property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseProjection
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseProjection
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseProjection
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Property.html b/org/neuroml/model/Property.html new file mode 100644 index 00000000..99c799ba --- /dev/null +++ b/org/neuroml/model/Property.html @@ -0,0 +1,335 @@ + + + + +Property (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Property

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Property
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Property +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A property ( a **tag** and **value** pair ), which can be on any **baseStandalone** either as a direct child, or within an **Annotation** . Generally something which helps the visual display or facilitates simulation of a Component, but is not a core physiological property. Common examples include: **numberInternalDivisions,** equivalent of nseg in NEURON; **radius,** for a radius to use in graphical displays for abstract cells ( i. e. without defined morphologies ); **color,** the color to use for a **Population** or **populationList** of cells; **recommended_dt_ms,** the recommended timestep to use for simulating a **Network** , **recommended_duration_ms** the recommended duration to use when running a **Network** + + +

Java class for Property complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Property">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="tag" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      tag

      +
      protected String tag
      +
      +
      • +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Property

      +
      public Property()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTag

      +
      public String getTag()
      +
      Gets the value of the tag property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTag

      +
      public void setTag(String value)
      +
      Sets the value of the tag property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ProximalDetails.html b/org/neuroml/model/ProximalDetails.html new file mode 100644 index 00000000..8694ef4b --- /dev/null +++ b/org/neuroml/model/ProximalDetails.html @@ -0,0 +1,281 @@ + + + + +ProximalDetails (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ProximalDetails

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.ProximalDetails
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ProximalDetails +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
What to do at the proximal point when creating an inhomogeneous parameter + + +

Java class for ProximalDetails complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ProximalDetails">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="translationStart" use="required" type="{http://www.w3.org/2001/XMLSchema}double" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      translationStart

      +
      protected double translationStart
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ProximalDetails

      +
      public ProximalDetails()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTranslationStart

      +
      public double getTranslationStart()
      +
      Gets the value of the translationStart property.
      +
      +
      • +
    • +
      +

      setTranslationStart

      +
      public void setTranslationStart(double value)
      +
      Sets the value of the translationStart property.
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/PulseGenerator.html b/org/neuroml/model/PulseGenerator.html new file mode 100644 index 00000000..23fae1a0 --- /dev/null +++ b/org/neuroml/model/PulseGenerator.html @@ -0,0 +1,403 @@ + + + + +PulseGenerator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class PulseGenerator

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.PulseGenerator
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class PulseGenerator +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current. Current is zero prior to this. + :type delay: time + :param duration: Duration for holding current at amplitude. Current is zero after delay + duration. + :type duration: time + :param amplitude: Amplitude of current pulse + :type amplitude: current + + + +

Java class for PulseGenerator complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="PulseGenerator">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="amplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_current" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      amplitude

      +
      protected String amplitude
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      PulseGenerator

      +
      public PulseGenerator()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getAmplitude

      +
      public String getAmplitude()
      +
      Gets the value of the amplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setAmplitude

      +
      public void setAmplitude(String value)
      +
      Sets the value of the amplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/PulseGeneratorDL.html b/org/neuroml/model/PulseGeneratorDL.html new file mode 100644 index 00000000..4c41a184 --- /dev/null +++ b/org/neuroml/model/PulseGeneratorDL.html @@ -0,0 +1,403 @@ + + + + +PulseGeneratorDL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class PulseGeneratorDL

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.PulseGeneratorDL
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class PulseGeneratorDL +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Dimensionless equivalent of **pulseGenerator** . Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current. Current is zero prior to this. + :type delay: time + :param duration: Duration for holding current at amplitude. Current is zero after delay + duration. + :type duration: time + :param amplitude: Amplitude of current pulse + :type amplitude: none + + + +

Java class for PulseGeneratorDL complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="PulseGeneratorDL">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="amplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      amplitude

      +
      protected String amplitude
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      PulseGeneratorDL

      +
      public PulseGeneratorDL()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getAmplitude

      +
      public String getAmplitude()
      +
      Gets the value of the amplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setAmplitude

      +
      public void setAmplitude(String value)
      +
      Sets the value of the amplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Q10ConductanceScaling.html b/org/neuroml/model/Q10ConductanceScaling.html new file mode 100644 index 00000000..3a702bc4 --- /dev/null +++ b/org/neuroml/model/Q10ConductanceScaling.html @@ -0,0 +1,341 @@ + + + + +Q10ConductanceScaling (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Q10ConductanceScaling

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Q10ConductanceScaling
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Q10ConductanceScaling +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A value for the conductance scaling which varies as a standard function of the difference between the current temperature, **temperature,** and the temperature at which the conductance was originally determined, **experimentalTemp** + \n + :param q10Factor: + :type q10Factor: none + :param experimentalTemp: + :type experimentalTemp: temperature + + + +

Java class for Q10ConductanceScaling complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Q10ConductanceScaling">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="q10Factor" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="experimentalTemp" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_temperature" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      q10Factor

      +
      protected String q10Factor
      +
      +
      • +
    • +
      +

      experimentalTemp

      +
      protected String experimentalTemp
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Q10ConductanceScaling

      +
      public Q10ConductanceScaling()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getQ10Factor

      +
      public String getQ10Factor()
      +
      Gets the value of the q10Factor property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setQ10Factor

      +
      public void setQ10Factor(String value)
      +
      Sets the value of the q10Factor property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getExperimentalTemp

      +
      public String getExperimentalTemp()
      +
      Gets the value of the experimentalTemp property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setExperimentalTemp

      +
      public void setExperimentalTemp(String value)
      +
      Sets the value of the experimentalTemp property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Q10Settings.html b/org/neuroml/model/Q10Settings.html new file mode 100644 index 00000000..212eba54 --- /dev/null +++ b/org/neuroml/model/Q10Settings.html @@ -0,0 +1,414 @@ + + + + +Q10Settings (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Q10Settings

+
+
java.lang.Object +
org.neuroml.model.Q10Settings
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Q10Settings +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for Q10Settings complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Q10Settings">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <attribute name="type" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="fixedQ10" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="q10Factor" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="experimentalTemp" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_temperature" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      type

      +
      protected String type
      +
      +
      • +
    • +
      +

      fixedQ10

      +
      protected String fixedQ10
      +
      +
      • +
    • +
      +

      q10Factor

      +
      protected String q10Factor
      +
      +
      • +
    • +
      +

      experimentalTemp

      +
      protected String experimentalTemp
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Q10Settings

      +
      public Q10Settings()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getType

      +
      public String getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(String value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getFixedQ10

      +
      public String getFixedQ10()
      +
      Gets the value of the fixedQ10 property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setFixedQ10

      +
      public void setFixedQ10(String value)
      +
      Sets the value of the fixedQ10 property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getQ10Factor

      +
      public String getQ10Factor()
      +
      Gets the value of the q10Factor property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setQ10Factor

      +
      public void setQ10Factor(String value)
      +
      Sets the value of the q10Factor property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getExperimentalTemp

      +
      public String getExperimentalTemp()
      +
      Gets the value of the experimentalTemp property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setExperimentalTemp

      +
      public void setExperimentalTemp(String value)
      +
      Sets the value of the experimentalTemp property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/RampGenerator.html b/org/neuroml/model/RampGenerator.html new file mode 100644 index 00000000..dd45a73f --- /dev/null +++ b/org/neuroml/model/RampGenerator.html @@ -0,0 +1,495 @@ + + + + +RampGenerator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class RampGenerator

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.RampGenerator
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class RampGenerator +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current. Current is baselineAmplitude prior to this. + :type delay: time + :param duration: Duration for holding current at amplitude. Current is baselineAmplitude after delay + duration. + :type duration: time + :param startAmplitude: Amplitude of linearly varying current at time delay + :type startAmplitude: current + :param finishAmplitude: Amplitude of linearly varying current at time delay + duration + :type finishAmplitude: current + :param baselineAmplitude: Amplitude of current before time delay, and after time delay + duration + :type baselineAmplitude: current + + + +

Java class for RampGenerator complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="RampGenerator">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="startAmplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_current" />
+       <attribute name="finishAmplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_current" />
+       <attribute name="baselineAmplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_current" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      startAmplitude

      +
      protected String startAmplitude
      +
      +
      • +
    • +
      +

      finishAmplitude

      +
      protected String finishAmplitude
      +
      +
      • +
    • +
      +

      baselineAmplitude

      +
      protected String baselineAmplitude
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      RampGenerator

      +
      public RampGenerator()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getStartAmplitude

      +
      public String getStartAmplitude()
      +
      Gets the value of the startAmplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setStartAmplitude

      +
      public void setStartAmplitude(String value)
      +
      Sets the value of the startAmplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getFinishAmplitude

      +
      public String getFinishAmplitude()
      +
      Gets the value of the finishAmplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setFinishAmplitude

      +
      public void setFinishAmplitude(String value)
      +
      Sets the value of the finishAmplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getBaselineAmplitude

      +
      public String getBaselineAmplitude()
      +
      Gets the value of the baselineAmplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setBaselineAmplitude

      +
      public void setBaselineAmplitude(String value)
      +
      Sets the value of the baselineAmplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/RampGeneratorDL.html b/org/neuroml/model/RampGeneratorDL.html new file mode 100644 index 00000000..dc535e57 --- /dev/null +++ b/org/neuroml/model/RampGeneratorDL.html @@ -0,0 +1,495 @@ + + + + +RampGeneratorDL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class RampGeneratorDL

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.RampGeneratorDL
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class RampGeneratorDL +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Dimensionless equivalent of **rampGenerator** . Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the dimensionless current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current. Current is baselineAmplitude prior to this. + :type delay: time + :param duration: Duration for holding current at amplitude. Current is baselineAmplitude after delay + duration. + :type duration: time + :param startAmplitude: Amplitude of linearly varying current at time delay + :type startAmplitude: none + :param finishAmplitude: Amplitude of linearly varying current at time delay + duration + :type finishAmplitude: none + :param baselineAmplitude: Amplitude of current before time delay, and after time delay + duration + :type baselineAmplitude: none + + + +

Java class for RampGeneratorDL complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="RampGeneratorDL">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="startAmplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="finishAmplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="baselineAmplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      startAmplitude

      +
      protected String startAmplitude
      +
      +
      • +
    • +
      +

      finishAmplitude

      +
      protected String finishAmplitude
      +
      +
      • +
    • +
      +

      baselineAmplitude

      +
      protected String baselineAmplitude
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      RampGeneratorDL

      +
      public RampGeneratorDL()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getStartAmplitude

      +
      public String getStartAmplitude()
      +
      Gets the value of the startAmplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setStartAmplitude

      +
      public void setStartAmplitude(String value)
      +
      Sets the value of the startAmplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getFinishAmplitude

      +
      public String getFinishAmplitude()
      +
      Gets the value of the finishAmplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setFinishAmplitude

      +
      public void setFinishAmplitude(String value)
      +
      Sets the value of the finishAmplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getBaselineAmplitude

      +
      public String getBaselineAmplitude()
      +
      Gets the value of the baselineAmplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setBaselineAmplitude

      +
      public void setBaselineAmplitude(String value)
      +
      Sets the value of the baselineAmplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/RandomLayout.html b/org/neuroml/model/RandomLayout.html new file mode 100644 index 00000000..9fcc6324 --- /dev/null +++ b/org/neuroml/model/RandomLayout.html @@ -0,0 +1,332 @@ + + + + +RandomLayout (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class RandomLayout

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.RandomLayout
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class RandomLayout +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for RandomLayout complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="RandomLayout">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="number" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+       <attribute name="region" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      number

      +
      protected BigInteger number
      +
      +
      • +
    • +
      +

      region

      +
      protected String region
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      RandomLayout

      +
      public RandomLayout()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNumber

      +
      public BigInteger getNumber()
      +
      Gets the value of the number property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setNumber

      +
      public void setNumber(BigInteger value)
      +
      Sets the value of the number property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      getRegion

      +
      public String getRegion()
      +
      Gets the value of the region property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRegion

      +
      public void setRegion(String value)
      +
      Sets the value of the region property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ReactionScheme.html b/org/neuroml/model/ReactionScheme.html new file mode 100644 index 00000000..2de215a8 --- /dev/null +++ b/org/neuroml/model/ReactionScheme.html @@ -0,0 +1,381 @@ + + + + +ReactionScheme (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ReactionScheme

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ReactionScheme
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ReactionScheme +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for ReactionScheme complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ReactionScheme">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <any processContents='skip' maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="source" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      any

      +
      protected List<Element> any
      +
      +
      • +
    • +
      +

      source

      +
      protected String source
      +
      +
      • +
    • +
      +

      type

      +
      protected String type
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ReactionScheme

      +
      public ReactionScheme()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAny

      +
      public List<Element> getAny()
      +
      Gets the value of the any property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the any property. + +

      + For example, to add a new item, do as follows: + 

      +    getAny().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Element

      +
      +
      • +
    • +
      +

      getSource

      +
      public String getSource()
      +
      Gets the value of the source property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSource

      +
      public void setSource(String value)
      +
      Sets the value of the source property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getType

      +
      public String getType()
      +
      Gets the value of the type property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setType

      +
      public void setType(String value)
      +
      Sets the value of the type property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Regime.html b/org/neuroml/model/Regime.html new file mode 100644 index 00000000..a73c37b0 --- /dev/null +++ b/org/neuroml/model/Regime.html @@ -0,0 +1,450 @@ + + + + +Regime (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Regime

+
+
java.lang.Object +
org.neuroml.model.Regime
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Regime +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for Regime complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Regime">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <sequence>
+         <element name="TimeDerivative" type="{http://www.neuroml.org/schema/neuroml2}TimeDerivative" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="OnEntry" type="{http://www.neuroml.org/schema/neuroml2}OnEntry" minOccurs="0"/>
+         <element name="OnCondition" type="{http://www.neuroml.org/schema/neuroml2}OnCondition" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="initial" type="{http://www.neuroml.org/schema/neuroml2}TrueOrFalse" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Regime

      +
      public Regime()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTimeDerivative

      +
      public List<TimeDerivative> getTimeDerivative()
      +
      Gets the value of the timeDerivative property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the timeDerivative property. + +

      + For example, to add a new item, do as follows: + 

      +    getTimeDerivative().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + TimeDerivative

      +
      +
      • +
    • +
      +

      getOnEntry

      +
      public OnEntry getOnEntry()
      +
      Gets the value of the onEntry property.
      +
      +
      Returns:
      +
      possible object is + OnEntry
      +
      +
      +
      • +
    • +
      +

      setOnEntry

      +
      public void setOnEntry(OnEntry value)
      +
      Sets the value of the onEntry property.
      +
      +
      Parameters:
      +
      value - allowed object is + OnEntry
      +
      +
      +
      • +
    • +
      +

      getOnCondition

      +
      public List<OnCondition> getOnCondition()
      +
      Gets the value of the onCondition property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the onCondition property. + +

      + For example, to add a new item, do as follows: + 

      +    getOnCondition().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + OnCondition

      +
      +
      • +
    • +
      +

      getName

      +
      public String getName()
      +
      Gets the value of the name property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setName

      +
      public void setName(String value)
      +
      Sets the value of the name property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getInitial

      +
      public TrueOrFalse getInitial()
      +
      Gets the value of the initial property.
      +
      +
      Returns:
      +
      possible object is + TrueOrFalse
      +
      +
      +
      • +
    • +
      +

      setInitial

      +
      public void setInitial(TrueOrFalse value)
      +
      Sets the value of the initial property.
      +
      +
      Parameters:
      +
      value - allowed object is + TrueOrFalse
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Region.html b/org/neuroml/model/Region.html new file mode 100644 index 00000000..165da764 --- /dev/null +++ b/org/neuroml/model/Region.html @@ -0,0 +1,340 @@ + + + + +Region (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Region

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Region
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Region +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Initial attempt to specify 3D region for placing cells. Work in progress. . . + + +

Java class for Region complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Region">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <any processContents='skip' maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="space" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      any

      +
      protected List<Element> any
      +
      +
      • +
    • +
      +

      space

      +
      protected String space
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Region

      +
      public Region()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAny

      +
      public List<Element> getAny()
      +
      Gets the value of the any property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the any property. + +

      + For example, to add a new item, do as follows: + 

      +    getAny().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Element

      +
      +
      • +
    • +
      +

      getSpace

      +
      public String getSpace()
      +
      Gets the value of the space property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSpace

      +
      public void setSpace(String value)
      +
      Sets the value of the space property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Requirement.html b/org/neuroml/model/Requirement.html new file mode 100644 index 00000000..37909c7f --- /dev/null +++ b/org/neuroml/model/Requirement.html @@ -0,0 +1,238 @@ + + + + +Requirement (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Requirement

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalType +
org.neuroml.model.Requirement
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Requirement +extends NamedDimensionalType +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for Requirement complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Requirement">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}NamedDimensionalType">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Requirement

      +
      public Requirement()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class NamedDimensionalType
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class NamedDimensionalType
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class NamedDimensionalType
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Resistivity.html b/org/neuroml/model/Resistivity.html new file mode 100644 index 00000000..1bad3bf1 --- /dev/null +++ b/org/neuroml/model/Resistivity.html @@ -0,0 +1,339 @@ + + + + +Resistivity (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Resistivity

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Resistivity
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Resistivity +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
The resistivity, or specific axial resistance, of the cytoplasm + \n + :param value: + :type value: resistivity + + + +

Java class for Resistivity complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Resistivity">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="value" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_resistivity" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Resistivity

      +
      public Resistivity()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/ReverseTransition.html b/org/neuroml/model/ReverseTransition.html new file mode 100644 index 00000000..bcac7820 --- /dev/null +++ b/org/neuroml/model/ReverseTransition.html @@ -0,0 +1,384 @@ + + + + +ReverseTransition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class ReverseTransition

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.ReverseTransition
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class ReverseTransition +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e. g. **HHExpRate** , **HHSigmoidRate** , **HHExpLinearRate** + + +

Java class for ReverseTransition complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="ReverseTransition">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <any processContents='skip' maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="from" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="to" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      any

      +
      protected List<Element> any
      +
      +
      • +
    • +
      +

      from

      +
      protected String from
      +
      +
      • +
    • +
      +

      to

      +
      protected String to
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      ReverseTransition

      +
      public ReverseTransition()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAny

      +
      public List<Element> getAny()
      +
      Gets the value of the any property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the any property. + +

      + For example, to add a new item, do as follows: + 

      +    getAny().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Element

      +
      +
      • +
    • +
      +

      getFrom

      +
      public String getFrom()
      +
      Gets the value of the from property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setFrom

      +
      public void setFrom(String value)
      +
      Sets the value of the from property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTo

      +
      public String getTo()
      +
      Gets the value of the to property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTo

      +
      public void setTo(String value)
      +
      Sets the value of the to property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Segment.html b/org/neuroml/model/Segment.html new file mode 100644 index 00000000..ed246f2e --- /dev/null +++ b/org/neuroml/model/Segment.html @@ -0,0 +1,477 @@ + + + + +Segment (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Segment

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.Segment
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Segment +extends BaseNonNegativeIntegerId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon. Its **id** should be a nonnegative integer ( usually soma/root = 0 ). Its end points are given by the **proximal** and **distal** points. The **proximal** point can be omitted, usually because it is the same as a point on the **parent** segment, see **proximal** for details. **parent** specifies the parent segment. The first segment of a **cell** ( with no **parent** ) usually represents the soma. The shape is normally a cylinder ( radii of the **proximal** and **distal** equal, but positions different ) or a conical frustum ( radii and positions different ). If the x, y, x positions of the **proximal** and **distal** are equal, the segment can be interpreted as a sphere, and in this case the radii of these points must be equal. NOTE: LEMS does not yet support multicompartmental modelling, so the Dynamics here is only appropriate for single compartment modelling. + + +

Java class for Segment complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Segment">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseNonNegativeIntegerId">
+       <sequence>
+         <element name="parent" type="{http://www.neuroml.org/schema/neuroml2}SegmentParent" minOccurs="0"/>
+         <element name="proximal" type="{http://www.neuroml.org/schema/neuroml2}Point3DWithDiam" minOccurs="0"/>
+         <element name="distal" type="{http://www.neuroml.org/schema/neuroml2}Point3DWithDiam"/>
+       </sequence>
+       <attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Segment

      +
      public Segment()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getParent

      +
      public SegmentParent getParent()
      +
      Gets the value of the parent property.
      +
      +
      Returns:
      +
      possible object is + SegmentParent
      +
      +
      +
      • +
    • +
      +

      setParent

      +
      public void setParent(SegmentParent value)
      +
      Sets the value of the parent property.
      +
      +
      Parameters:
      +
      value - allowed object is + SegmentParent
      +
      +
      +
      • +
    • +
      +

      getProximal

      +
      public Point3DWithDiam getProximal()
      +
      Gets the value of the proximal property.
      +
      +
      Returns:
      +
      possible object is + Point3DWithDiam
      +
      +
      +
      • +
    • +
      +

      setProximal

      +
      public void setProximal(Point3DWithDiam value)
      +
      Sets the value of the proximal property.
      +
      +
      Parameters:
      +
      value - allowed object is + Point3DWithDiam
      +
      +
      +
      • +
    • +
      +

      getDistal

      +
      public Point3DWithDiam getDistal()
      +
      Gets the value of the distal property.
      +
      +
      Returns:
      +
      possible object is + Point3DWithDiam
      +
      +
      +
      • +
    • +
      +

      setDistal

      +
      public void setDistal(Point3DWithDiam value)
      +
      Sets the value of the distal property.
      +
      +
      Parameters:
      +
      value - allowed object is + Point3DWithDiam
      +
      +
      +
      • +
    • +
      +

      getName

      +
      public String getName()
      +
      Gets the value of the name property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setName

      +
      public void setName(String value)
      +
      Sets the value of the name property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SegmentEndPoint.html b/org/neuroml/model/SegmentEndPoint.html new file mode 100644 index 00000000..77c0f1b7 --- /dev/null +++ b/org/neuroml/model/SegmentEndPoint.html @@ -0,0 +1,288 @@ + + + + +SegmentEndPoint (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SegmentEndPoint

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.SegmentEndPoint
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SegmentEndPoint +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for SegmentEndPoint complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SegmentEndPoint">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="segment" use="required" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      segment

      +
      protected Integer segment
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SegmentEndPoint

      +
      public SegmentEndPoint()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSegment

      +
      public Integer getSegment()
      +
      Gets the value of the segment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegment

      +
      public void setSegment(Integer value)
      +
      Sets the value of the segment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SegmentGroup.html b/org/neuroml/model/SegmentGroup.html new file mode 100644 index 00000000..2f233d72 --- /dev/null +++ b/org/neuroml/model/SegmentGroup.html @@ -0,0 +1,623 @@ + + + + +SegmentGroup (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SegmentGroup

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.SegmentGroup
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SegmentGroup +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
A method to describe a group of **segment** s in a **morphology** , e. g. soma_group, dendrite_group, axon_group. While a name is useful to describe the group, the **neuroLexId** attribute can be used to explicitly specify the meaning of the group, e. g. sao1044911821 for 'Neuronal Cell Body', sao1211023249 for 'Dendrite'. The **segment** s in this group can be specified as: a list of individual **member** segments; a **path** , all of the segments along which should be included; a **subTree** of the **cell** to include; other segmentGroups to **include** ( so all segments from those get included here ). An **inhomogeneousParameter** can be defined on the region of the cell specified by this group ( see **variableParameter** for usage ). + + +

Java class for SegmentGroup complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SegmentGroup">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="property" type="{http://www.neuroml.org/schema/neuroml2}Property" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="annotation" type="{http://www.neuroml.org/schema/neuroml2}Annotation" minOccurs="0"/>
+         <element name="member" type="{http://www.neuroml.org/schema/neuroml2}Member" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="include" type="{http://www.neuroml.org/schema/neuroml2}Include" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="path" type="{http://www.neuroml.org/schema/neuroml2}Path" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="subTree" type="{http://www.neuroml.org/schema/neuroml2}SubTree" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="inhomogeneousParameter" type="{http://www.neuroml.org/schema/neuroml2}InhomogeneousParameter" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SegmentGroup

      +
      public SegmentGroup()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getProperty

      +
      public List<Property> getProperty()
      +
      Gets the value of the property property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the property property. + +

      + For example, to add a new item, do as follows: + 

      +    getProperty().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Property

      +
      +
      • +
    • +
      +

      getAnnotation

      +
      public Annotation getAnnotation()
      +
      Gets the value of the annotation property.
      +
      +
      Returns:
      +
      possible object is + Annotation
      +
      +
      +
      • +
    • +
      +

      setAnnotation

      +
      public void setAnnotation(Annotation value)
      +
      Sets the value of the annotation property.
      +
      +
      Parameters:
      +
      value - allowed object is + Annotation
      +
      +
      +
      • +
    • +
      +

      getMember

      +
      public List<Member> getMember()
      +
      Gets the value of the member property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the member property. + +

      + For example, to add a new item, do as follows: + 

      +    getMember().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Member

      +
      +
      • +
    • +
      +

      getInclude

      +
      public List<Include> getInclude()
      +
      Gets the value of the include property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the include property. + +

      + For example, to add a new item, do as follows: + 

      +    getInclude().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Include

      +
      +
      • +
    • +
      +

      getPath

      +
      public List<Path> getPath()
      +
      Gets the value of the path property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the path property. + +

      + For example, to add a new item, do as follows: + 

      +    getPath().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Path

      +
      +
      • +
    • +
      +

      getSubTree

      +
      public List<SubTree> getSubTree()
      +
      Gets the value of the subTree property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the subTree property. + +

      + For example, to add a new item, do as follows: + 

      +    getSubTree().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + SubTree

      +
      +
      • +
    • +
      +

      getInhomogeneousParameter

      +
      public List<InhomogeneousParameter> getInhomogeneousParameter()
      +
      Gets the value of the inhomogeneousParameter property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the inhomogeneousParameter property. + +

      + For example, to add a new item, do as follows: + 

      +    getInhomogeneousParameter().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + InhomogeneousParameter

      +
      +
      • +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SegmentParent.html b/org/neuroml/model/SegmentParent.html new file mode 100644 index 00000000..bbbfb051 --- /dev/null +++ b/org/neuroml/model/SegmentParent.html @@ -0,0 +1,332 @@ + + + + +SegmentParent (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SegmentParent

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.SegmentParent
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SegmentParent +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for SegmentParent complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SegmentParent">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="segment" use="required" type="{http://www.neuroml.org/schema/neuroml2}NonNegativeInteger" />
+       <attribute name="fractionAlong" type="{http://www.neuroml.org/schema/neuroml2}ZeroToOne" default="1" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      segment

      +
      protected Integer segment
      +
      +
      • +
    • +
      +

      fractionAlong

      +
      protected Float fractionAlong
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SegmentParent

      +
      public SegmentParent()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSegment

      +
      public Integer getSegment()
      +
      Gets the value of the segment property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegment

      +
      public void setSegment(Integer value)
      +
      Sets the value of the segment property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getFractionAlong

      +
      public float getFractionAlong()
      +
      Gets the value of the fractionAlong property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setFractionAlong

      +
      public void setFractionAlong(Float value)
      +
      Sets the value of the fractionAlong property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SilentSynapse.html b/org/neuroml/model/SilentSynapse.html new file mode 100644 index 00000000..21aed960 --- /dev/null +++ b/org/neuroml/model/SilentSynapse.html @@ -0,0 +1,257 @@ + + + + +SilentSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SilentSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.BaseSynapse +
org.neuroml.model.SilentSynapse
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SilentSynapse +extends BaseSynapse +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Dummy synapse which emits no current. Used as presynaptic endpoint for analog synaptic connection. + + +

Java class for SilentSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SilentSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseSynapse">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SilentSynapse

      +
      public SilentSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseSynapse
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseSynapse
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SineGenerator.html b/org/neuroml/model/SineGenerator.html new file mode 100644 index 00000000..46866a00 --- /dev/null +++ b/org/neuroml/model/SineGenerator.html @@ -0,0 +1,495 @@ + + + + +SineGenerator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SineGenerator

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.SineGenerator
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SineGenerator +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start. Scaled by **weight,** if set + \n + :param phase: Phase ( between 0 and 2*pi ) at which to start the varying current ( i. e. at time given by delay ) + :type phase: none + :param delay: Delay before change in current. Current is zero prior to this. + :type delay: time + :param duration: Duration for holding current at amplitude. Current is zero after delay + duration. + :type duration: time + :param amplitude: Maximum amplitude of current + :type amplitude: current + :param period: Time period of oscillation + :type period: time + + + +

Java class for SineGenerator complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SineGenerator">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="phase" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="amplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_current" />
+       <attribute name="period" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      phase

      +
      protected String phase
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      amplitude

      +
      protected String amplitude
      +
      +
      • +
    • +
      +

      period

      +
      protected String period
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SineGenerator

      +
      public SineGenerator()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPhase

      +
      public String getPhase()
      +
      Gets the value of the phase property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPhase

      +
      public void setPhase(String value)
      +
      Sets the value of the phase property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getAmplitude

      +
      public String getAmplitude()
      +
      Gets the value of the amplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setAmplitude

      +
      public void setAmplitude(String value)
      +
      Sets the value of the amplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPeriod

      +
      public String getPeriod()
      +
      Gets the value of the period property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPeriod

      +
      public void setPeriod(String value)
      +
      Sets the value of the period property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SineGeneratorDL.html b/org/neuroml/model/SineGeneratorDL.html new file mode 100644 index 00000000..9819b1ad --- /dev/null +++ b/org/neuroml/model/SineGeneratorDL.html @@ -0,0 +1,495 @@ + + + + +SineGeneratorDL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SineGeneratorDL

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.SineGeneratorDL
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SineGeneratorDL +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Dimensionless equivalent of **sineGenerator** . Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start. Scaled by **weight,** if set + \n + :param phase: Phase ( between 0 and 2*pi ) at which to start the varying current ( i. e. at time given by delay ) + :type phase: none + :param delay: Delay before change in current. Current is zero prior to this. + :type delay: time + :param duration: Duration for holding current at amplitude. Current is zero after delay + duration. + :type duration: time + :param amplitude: Maximum amplitude of current + :type amplitude: none + :param period: Time period of oscillation + :type period: time + + + +

Java class for SineGeneratorDL complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SineGeneratorDL">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="phase" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="amplitude" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_none" />
+       <attribute name="period" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      phase

      +
      protected String phase
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      amplitude

      +
      protected String amplitude
      +
      +
      • +
    • +
      +

      period

      +
      protected String period
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SineGeneratorDL

      +
      public SineGeneratorDL()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPhase

      +
      public String getPhase()
      +
      Gets the value of the phase property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPhase

      +
      public void setPhase(String value)
      +
      Sets the value of the phase property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getAmplitude

      +
      public String getAmplitude()
      +
      Gets the value of the amplitude property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setAmplitude

      +
      public void setAmplitude(String value)
      +
      Sets the value of the amplitude property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getPeriod

      +
      public String getPeriod()
      +
      Gets the value of the period property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPeriod

      +
      public void setPeriod(String value)
      +
      Sets the value of the period property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Space.html b/org/neuroml/model/Space.html new file mode 100644 index 00000000..c8f113a4 --- /dev/null +++ b/org/neuroml/model/Space.html @@ -0,0 +1,342 @@ + + + + +Space (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Space

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Space
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Space +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for Space complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Space">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="structure" type="{http://www.neuroml.org/schema/neuroml2}SpaceStructure" minOccurs="0"/>
+       </sequence>
+       <attribute name="basedOn" type="{http://www.neuroml.org/schema/neuroml2}allowedSpaces" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Space

      +
      public Space()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getStructure

      +
      public SpaceStructure getStructure()
      +
      Gets the value of the structure property.
      +
      +
      Returns:
      +
      possible object is + SpaceStructure
      +
      +
      +
      • +
    • +
      +

      setStructure

      +
      public void setStructure(SpaceStructure value)
      +
      Sets the value of the structure property.
      +
      +
      Parameters:
      +
      value - allowed object is + SpaceStructure
      +
      +
      +
      • +
    • +
      +

      getBasedOn

      +
      public AllowedSpaces getBasedOn()
      +
      Gets the value of the basedOn property.
      +
      +
      Returns:
      +
      possible object is + AllowedSpaces
      +
      +
      +
      • +
    • +
      +

      setBasedOn

      +
      public void setBasedOn(AllowedSpaces value)
      +
      Sets the value of the basedOn property.
      +
      +
      Parameters:
      +
      value - allowed object is + AllowedSpaces
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpaceStructure.html b/org/neuroml/model/SpaceStructure.html new file mode 100644 index 00000000..a0cbbf8b --- /dev/null +++ b/org/neuroml/model/SpaceStructure.html @@ -0,0 +1,508 @@ + + + + +SpaceStructure (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpaceStructure

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.SpaceStructure
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SpaceStructure +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for SpaceStructure complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpaceStructure">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="xSpacing" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="ySpacing" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="zSpacing" type="{http://www.w3.org/2001/XMLSchema}float" />
+       <attribute name="xStart" type="{http://www.w3.org/2001/XMLSchema}float" default="0" />
+       <attribute name="yStart" type="{http://www.w3.org/2001/XMLSchema}float" default="0" />
+       <attribute name="zStart" type="{http://www.w3.org/2001/XMLSchema}float" default="0" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      xSpacing

      +
      protected Float xSpacing
      +
      +
      • +
    • +
      +

      ySpacing

      +
      protected Float ySpacing
      +
      +
      • +
    • +
      +

      zSpacing

      +
      protected Float zSpacing
      +
      +
      • +
    • +
      +

      xStart

      +
      protected Float xStart
      +
      +
      • +
    • +
      +

      yStart

      +
      protected Float yStart
      +
      +
      • +
    • +
      +

      zStart

      +
      protected Float zStart
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpaceStructure

      +
      public SpaceStructure()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getXSpacing

      +
      public Float getXSpacing()
      +
      Gets the value of the xSpacing property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setXSpacing

      +
      public void setXSpacing(Float value)
      +
      Sets the value of the xSpacing property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      getYSpacing

      +
      public Float getYSpacing()
      +
      Gets the value of the ySpacing property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setYSpacing

      +
      public void setYSpacing(Float value)
      +
      Sets the value of the ySpacing property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      getZSpacing

      +
      public Float getZSpacing()
      +
      Gets the value of the zSpacing property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setZSpacing

      +
      public void setZSpacing(Float value)
      +
      Sets the value of the zSpacing property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      getXStart

      +
      public float getXStart()
      +
      Gets the value of the xStart property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setXStart

      +
      public void setXStart(Float value)
      +
      Sets the value of the xStart property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      getYStart

      +
      public float getYStart()
      +
      Gets the value of the yStart property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setYStart

      +
      public void setYStart(Float value)
      +
      Sets the value of the yStart property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      getZStart

      +
      public float getZStart()
      +
      Gets the value of the zStart property.
      +
      +
      Returns:
      +
      possible object is + Float
      +
      +
      +
      • +
    • +
      +

      setZStart

      +
      public void setZStart(Float value)
      +
      Sets the value of the zStart property.
      +
      +
      Parameters:
      +
      value - allowed object is + Float
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Species.html b/org/neuroml/model/Species.html new file mode 100644 index 00000000..06301a0d --- /dev/null +++ b/org/neuroml/model/Species.html @@ -0,0 +1,481 @@ + + + + +Species (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Species

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Species
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Species +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration + \n + :param initialConcentration: + :type initialConcentration: concentration + :param initialExtConcentration: + :type initialExtConcentration: concentration + + + +

Java class for Species complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Species">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <attribute name="concentrationModel" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="ion" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="initialConcentration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_concentration" />
+       <attribute name="initialExtConcentration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_concentration" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      concentrationModel

      +
      protected String concentrationModel
      +
      +
      • +
    • +
      +

      ion

      +
      protected String ion
      +
      +
      • +
    • +
      +

      initialConcentration

      +
      protected String initialConcentration
      +
      +
      • +
    • +
      +

      initialExtConcentration

      +
      protected String initialExtConcentration
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Species

      +
      public Species()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getConcentrationModel

      +
      public String getConcentrationModel()
      +
      Gets the value of the concentrationModel property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setConcentrationModel

      +
      public void setConcentrationModel(String value)
      +
      Sets the value of the concentrationModel property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getIon

      +
      public String getIon()
      +
      Gets the value of the ion property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setIon

      +
      public void setIon(String value)
      +
      Sets the value of the ion property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getInitialConcentration

      +
      public String getInitialConcentration()
      +
      Gets the value of the initialConcentration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInitialConcentration

      +
      public void setInitialConcentration(String value)
      +
      Sets the value of the initialConcentration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getInitialExtConcentration

      +
      public String getInitialExtConcentration()
      +
      Gets the value of the initialExtConcentration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setInitialExtConcentration

      +
      public void setInitialExtConcentration(String value)
      +
      Sets the value of the initialExtConcentration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpecificCapacitance.html b/org/neuroml/model/SpecificCapacitance.html new file mode 100644 index 00000000..433d860a --- /dev/null +++ b/org/neuroml/model/SpecificCapacitance.html @@ -0,0 +1,339 @@ + + + + +SpecificCapacitance (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpecificCapacitance

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.SpecificCapacitance
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SpecificCapacitance +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Capacitance per unit area + \n + :param value: + :type value: specificCapacitance + + + +

Java class for SpecificCapacitance complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpecificCapacitance">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="value" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_specificCapacitance" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpecificCapacitance

      +
      public SpecificCapacitance()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Spike.html b/org/neuroml/model/Spike.html new file mode 100644 index 00000000..17b8c5d6 --- /dev/null +++ b/org/neuroml/model/Spike.html @@ -0,0 +1,303 @@ + + + + +Spike (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Spike

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.BaseNonNegativeIntegerId +
org.neuroml.model.Spike
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Spike +extends BaseNonNegativeIntegerId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Emits a single spike at the specified **time** + \n + :param time: Time at which to emit one spike event + :type time: time + + + +

Java class for Spike complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Spike">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseNonNegativeIntegerId">
+       <attribute name="time" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      time

      +
      protected String time
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Spike

      +
      public Spike()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getTime

      +
      public String getTime()
      +
      Gets the value of the time property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTime

      +
      public void setTime(String value)
      +
      Sets the value of the time property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseNonNegativeIntegerId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpikeArray.html b/org/neuroml/model/SpikeArray.html new file mode 100644 index 00000000..9dd6a315 --- /dev/null +++ b/org/neuroml/model/SpikeArray.html @@ -0,0 +1,304 @@ + + + + +SpikeArray (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpikeArray

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.SpikeArray
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SpikeArray +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Set of spike ComponentTypes, each emitting one spike at a certain time. Can be used to feed a predetermined spike train into a cell + + +

Java class for SpikeArray complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpikeArray">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="spike" type="{http://www.neuroml.org/schema/neuroml2}Spike" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      spike

      +
      protected List<Spike> spike
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpikeArray

      +
      public SpikeArray()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSpike

      +
      public List<Spike> getSpike()
      +
      Gets the value of the spike property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spike property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpike().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Spike

      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpikeGenerator.html b/org/neuroml/model/SpikeGenerator.html new file mode 100644 index 00000000..d3a64c4b --- /dev/null +++ b/org/neuroml/model/SpikeGenerator.html @@ -0,0 +1,311 @@ + + + + +SpikeGenerator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpikeGenerator

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.SpikeGenerator
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SpikeGenerator +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Simple generator of spikes at a regular interval set by **period** + \n + :param period: Time between spikes. The first spike will be emitted after this time. + :type period: time + + + +

Java class for SpikeGenerator complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpikeGenerator">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="period" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      period

      +
      protected String period
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpikeGenerator

      +
      public SpikeGenerator()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getPeriod

      +
      public String getPeriod()
      +
      Gets the value of the period property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setPeriod

      +
      public void setPeriod(String value)
      +
      Sets the value of the period property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpikeGeneratorPoisson.html b/org/neuroml/model/SpikeGeneratorPoisson.html new file mode 100644 index 00000000..e0768036 --- /dev/null +++ b/org/neuroml/model/SpikeGeneratorPoisson.html @@ -0,0 +1,315 @@ + + + + +SpikeGeneratorPoisson (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpikeGeneratorPoisson

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.SpikeGeneratorPoisson
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
SpikeGeneratorRefPoisson
+
+
+
public class SpikeGeneratorPoisson +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time + + + +

Java class for SpikeGeneratorPoisson complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpikeGeneratorPoisson">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="averageRate" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_pertime" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      averageRate

      +
      protected String averageRate
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpikeGeneratorPoisson

      +
      public SpikeGeneratorPoisson()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAverageRate

      +
      public String getAverageRate()
      +
      Gets the value of the averageRate property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setAverageRate

      +
      public void setAverageRate(String value)
      +
      Sets the value of the averageRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpikeGeneratorRandom.html b/org/neuroml/model/SpikeGeneratorRandom.html new file mode 100644 index 00000000..087c5d9e --- /dev/null +++ b/org/neuroml/model/SpikeGeneratorRandom.html @@ -0,0 +1,357 @@ + + + + +SpikeGeneratorRandom (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpikeGeneratorRandom

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.SpikeGeneratorRandom
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SpikeGeneratorRandom +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** + \n + :param maxISI: Maximum interspike interval + :type maxISI: time + :param minISI: Minimum interspike interval + :type minISI: time + + + +

Java class for SpikeGeneratorRandom complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpikeGeneratorRandom">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="maxISI" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="minISI" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      maxISI

      +
      protected String maxISI
      +
      +
      • +
    • +
      +

      minISI

      +
      protected String minISI
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpikeGeneratorRandom

      +
      public SpikeGeneratorRandom()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getMaxISI

      +
      public String getMaxISI()
      +
      Gets the value of the maxISI property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setMaxISI

      +
      public void setMaxISI(String value)
      +
      Sets the value of the maxISI property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getMinISI

      +
      public String getMinISI()
      +
      Gets the value of the minISI property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setMinISI

      +
      public void setMinISI(String value)
      +
      Sets the value of the minISI property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpikeGeneratorRefPoisson.html b/org/neuroml/model/SpikeGeneratorRefPoisson.html new file mode 100644 index 00000000..cf8e2437 --- /dev/null +++ b/org/neuroml/model/SpikeGeneratorRefPoisson.html @@ -0,0 +1,321 @@ + + + + +SpikeGeneratorRefPoisson (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpikeGeneratorRefPoisson

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.SpikeGeneratorPoisson +
org.neuroml.model.SpikeGeneratorRefPoisson
+
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SpikeGeneratorRefPoisson +extends SpikeGeneratorPoisson +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** + \n + :param minimumISI: The minimum interspike interval + :type minimumISI: time + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time + + + +

Java class for SpikeGeneratorRefPoisson complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpikeGeneratorRefPoisson">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}SpikeGeneratorPoisson">
+       <attribute name="minimumISI" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      minimumISI

      +
      protected String minimumISI
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpikeGeneratorRefPoisson

      +
      public SpikeGeneratorRefPoisson()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getMinimumISI

      +
      public String getMinimumISI()
      +
      Gets the value of the minimumISI property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setMinimumISI

      +
      public void setMinimumISI(String value)
      +
      Sets the value of the minimumISI property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class SpikeGeneratorPoisson
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class SpikeGeneratorPoisson
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class SpikeGeneratorPoisson
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpikeSourcePoisson.html b/org/neuroml/model/SpikeSourcePoisson.html new file mode 100644 index 00000000..c5a888f4 --- /dev/null +++ b/org/neuroml/model/SpikeSourcePoisson.html @@ -0,0 +1,403 @@ + + + + +SpikeSourcePoisson (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpikeSourcePoisson

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.SpikeSourcePoisson
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SpikeSourcePoisson +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Spike source, generating spikes according to a Poisson process. + \n + :param start: + :type start: time + :param duration: + :type duration: time + :param rate: + :type rate: per_time + + + +

Java class for SpikeSourcePoisson complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpikeSourcePoisson">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="start" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="rate" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_pertime" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      start

      +
      protected String start
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      rate

      +
      protected String rate
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpikeSourcePoisson

      +
      public SpikeSourcePoisson()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getStart

      +
      public String getStart()
      +
      Gets the value of the start property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setStart

      +
      public void setStart(String value)
      +
      Sets the value of the start property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getRate

      +
      public String getRate()
      +
      Gets the value of the rate property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRate

      +
      public void setRate(String value)
      +
      Sets the value of the rate property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SpikeThresh.html b/org/neuroml/model/SpikeThresh.html new file mode 100644 index 00000000..8336e223 --- /dev/null +++ b/org/neuroml/model/SpikeThresh.html @@ -0,0 +1,339 @@ + + + + +SpikeThresh (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SpikeThresh

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.SpikeThresh
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SpikeThresh +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Membrane potential at which to emit a spiking event. Note, usually the spiking event will not be emitted again until the membrane potential has fallen below this value and rises again to cross it in a positive direction + \n + :param value: + :type value: voltage + + + +

Java class for SpikeThresh complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SpikeThresh">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="value" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="segmentGroup" type="{http://www.neuroml.org/schema/neuroml2}NmlId" default="all" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SpikeThresh

      +
      public SpikeThresh()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Standalone.html b/org/neuroml/model/Standalone.html new file mode 100644 index 00000000..e6fb8045 --- /dev/null +++ b/org/neuroml/model/Standalone.html @@ -0,0 +1,431 @@ + + + + +Standalone (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Standalone

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
Direct Known Subclasses:
+
BaseCell, BaseSynapse, BiophysicalProperties, BiophysicalProperties2CaPools, CompoundInput, CompoundInputDL, DecayingPoolConcentrationModel, FixedFactorConcentrationModel, IonChannelKS, IonChannelScalable, Morphology, Network, NeuroMLDocument, PoissonFiringSynapse, Population, PulseGenerator, PulseGeneratorDL, RampGenerator, RampGeneratorDL, SineGenerator, SineGeneratorDL, SpikeArray, SpikeGenerator, SpikeGeneratorPoisson, SpikeGeneratorRandom, SpikeSourcePoisson, TimedSynapticInput, TransientPoissonFiringSynapse, VoltageClamp, VoltageClampTriple
+
+
+
public class Standalone +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Elements which can stand alone and be referenced by id, e.g. cell, morphology. + +

Java class for Standalone complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Standalone">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <sequence>
+         <element name="notes" type="{http://www.neuroml.org/schema/neuroml2}Notes" minOccurs="0"/>
+         <element name="property" type="{http://www.neuroml.org/schema/neuroml2}Property" maxOccurs="unbounded" minOccurs="0"/>
+         <element name="annotation" type="{http://www.neuroml.org/schema/neuroml2}Annotation" minOccurs="0"/>
+       </sequence>
+       <attribute name="metaid" type="{http://www.neuroml.org/schema/neuroml2}MetaId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      notes

      +
      protected String notes
      +
      +
      • +
    • +
      +

      property

      +
      protected List<Property> property
      +
      +
      • +
    • +
      +

      annotation

      +
      protected Annotation annotation
      +
      +
      • +
    • +
      +

      metaid

      +
      protected String metaid
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Standalone

      +
      public Standalone()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNotes

      +
      public String getNotes()
      +
      Gets the value of the notes property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNotes

      +
      public void setNotes(String value)
      +
      Sets the value of the notes property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getProperty

      +
      public List<Property> getProperty()
      +
      Gets the value of the property property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the property property. + +

      + For example, to add a new item, do as follows: + 

      +    getProperty().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Property

      +
      +
      • +
    • +
      +

      getAnnotation

      +
      public Annotation getAnnotation()
      +
      Gets the value of the annotation property.
      +
      +
      Returns:
      +
      possible object is + Annotation
      +
      +
      +
      • +
    • +
      +

      setAnnotation

      +
      public void setAnnotation(Annotation value)
      +
      Sets the value of the annotation property.
      +
      +
      Parameters:
      +
      value - allowed object is + Annotation
      +
      +
      +
      • +
    • +
      +

      getMetaid

      +
      public String getMetaid()
      +
      Gets the value of the metaid property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setMetaid

      +
      public void setMetaid(String value)
      +
      Sets the value of the metaid property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/StateAssignment.html b/org/neuroml/model/StateAssignment.html new file mode 100644 index 00000000..bf27177a --- /dev/null +++ b/org/neuroml/model/StateAssignment.html @@ -0,0 +1,326 @@ + + + + +StateAssignment (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class StateAssignment

+
+
java.lang.Object +
org.neuroml.model.StateAssignment
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class StateAssignment +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for StateAssignment complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="StateAssignment">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <attribute name="variable" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      variable

      +
      protected String variable
      +
      +
      • +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      StateAssignment

      +
      public StateAssignment()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVariable

      +
      public String getVariable()
      +
      Gets the value of the variable property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVariable

      +
      public void setVariable(String value)
      +
      Sets the value of the variable property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/StateVariable.html b/org/neuroml/model/StateVariable.html new file mode 100644 index 00000000..e921b679 --- /dev/null +++ b/org/neuroml/model/StateVariable.html @@ -0,0 +1,238 @@ + + + + +StateVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class StateVariable

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.NamedDimensionalVariable +
org.neuroml.model.StateVariable
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class StateVariable +extends NamedDimensionalVariable +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for StateVariable complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="StateVariable">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}NamedDimensionalVariable">
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      StateVariable

      +
      public StateVariable()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class NamedDimensionalVariable
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class NamedDimensionalVariable
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class NamedDimensionalVariable
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SubTree.html b/org/neuroml/model/SubTree.html new file mode 100644 index 00000000..863310f2 --- /dev/null +++ b/org/neuroml/model/SubTree.html @@ -0,0 +1,337 @@ + + + + +SubTree (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SubTree

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.SubTree
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SubTree +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Include all the **segment** s distal to that specified by **from** in the **segmentGroup** + + +

Java class for SubTree complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SubTree">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <choice>
+         <element name="from" type="{http://www.neuroml.org/schema/neuroml2}SegmentEndPoint" minOccurs="0"/>
+         <element name="to" type="{http://www.neuroml.org/schema/neuroml2}SegmentEndPoint" minOccurs="0"/>
+       </choice>
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SubTree

      +
      public SubTree()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getFrom

      +
      public SegmentEndPoint getFrom()
      +
      Gets the value of the from property.
      +
      +
      Returns:
      +
      possible object is + SegmentEndPoint
      +
      +
      +
      • +
    • +
      +

      setFrom

      +
      public void setFrom(SegmentEndPoint value)
      +
      Sets the value of the from property.
      +
      +
      Parameters:
      +
      value - allowed object is + SegmentEndPoint
      +
      +
      +
      • +
    • +
      +

      getTo

      +
      public SegmentEndPoint getTo()
      +
      Gets the value of the to property.
      +
      +
      Returns:
      +
      possible object is + SegmentEndPoint
      +
      +
      +
      • +
    • +
      +

      setTo

      +
      public void setTo(SegmentEndPoint value)
      +
      Sets the value of the to property.
      +
      +
      Parameters:
      +
      value - allowed object is + SegmentEndPoint
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/SynapticConnection.html b/org/neuroml/model/SynapticConnection.html new file mode 100644 index 00000000..2788c2b7 --- /dev/null +++ b/org/neuroml/model/SynapticConnection.html @@ -0,0 +1,467 @@ + + + + +SynapticConnection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class SynapticConnection

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.SynapticConnection
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class SynapticConnection +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Explicit event connection between named components, which gets processed via a new instance of a **synapse** component which is created on the target component + + +

Java class for SynapticConnection complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="SynapticConnection">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="neuroLexId" type="{http://www.neuroml.org/schema/neuroml2}NeuroLexId" />
+       <attribute name="from" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2PopulationReferencePath" />
+       <attribute name="to" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2PopulationReferencePath" />
+       <attribute name="synapse" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="destination" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      neuroLexId

      +
      protected String neuroLexId
      +
      +
      • +
    • +
      +

      from

      +
      protected String from
      +
      +
      • +
    • +
      +

      to

      +
      protected String to
      +
      +
      • +
    • +
      +

      synapse

      +
      protected String synapse
      +
      +
      • +
    • +
      +

      destination

      +
      protected String destination
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      SynapticConnection

      +
      public SynapticConnection()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNeuroLexId

      +
      public String getNeuroLexId()
      +
      Gets the value of the neuroLexId property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setNeuroLexId

      +
      public void setNeuroLexId(String value)
      +
      Sets the value of the neuroLexId property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getFrom

      +
      public String getFrom()
      +
      Gets the value of the from property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setFrom

      +
      public void setFrom(String value)
      +
      Sets the value of the from property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTo

      +
      public String getTo()
      +
      Gets the value of the to property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTo

      +
      public void setTo(String value)
      +
      Sets the value of the to property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSynapse

      +
      public String getSynapse()
      +
      Gets the value of the synapse property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse

      +
      public void setSynapse(String value)
      +
      Sets the value of the synapse property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDestination

      +
      public String getDestination()
      +
      Gets the value of the destination property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDestination

      +
      public void setDestination(String value)
      +
      Sets the value of the destination property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/TauInfTransition.html b/org/neuroml/model/TauInfTransition.html new file mode 100644 index 00000000..9a2039d3 --- /dev/null +++ b/org/neuroml/model/TauInfTransition.html @@ -0,0 +1,433 @@ + + + + +TauInfTransition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class TauInfTransition

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.TauInfTransition
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class TauInfTransition +extends Base +implements org.jvnet.jaxb2_commons.lang.ToString2
+
KS Transition specified in terms of time constant **tau** and steady state **inf** + + +

Java class for TauInfTransition complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="TauInfTransition">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Base">
+       <all>
+         <element name="steadyState" type="{http://www.neuroml.org/schema/neuroml2}HHVariable"/>
+         <element name="timeCourse" type="{http://www.neuroml.org/schema/neuroml2}HHTime"/>
+       </all>
+       <attribute name="from" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="to" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      steadyState

      +
      protected HHVariable steadyState
      +
      +
      • +
    • +
      +

      timeCourse

      +
      protected HHTime timeCourse
      +
      +
      • +
    • +
      +

      from

      +
      protected String from
      +
      +
      • +
    • +
      +

      to

      +
      protected String to
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      TauInfTransition

      +
      public TauInfTransition()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSteadyState

      +
      public HHVariable getSteadyState()
      +
      Gets the value of the steadyState property.
      +
      +
      Returns:
      +
      possible object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      setSteadyState

      +
      public void setSteadyState(HHVariable value)
      +
      Sets the value of the steadyState property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHVariable
      +
      +
      +
      • +
    • +
      +

      getTimeCourse

      +
      public HHTime getTimeCourse()
      +
      Gets the value of the timeCourse property.
      +
      +
      Returns:
      +
      possible object is + HHTime
      +
      +
      +
      • +
    • +
      +

      setTimeCourse

      +
      public void setTimeCourse(HHTime value)
      +
      Sets the value of the timeCourse property.
      +
      +
      Parameters:
      +
      value - allowed object is + HHTime
      +
      +
      +
      • +
    • +
      +

      getFrom

      +
      public String getFrom()
      +
      Gets the value of the from property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setFrom

      +
      public void setFrom(String value)
      +
      Sets the value of the from property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTo

      +
      public String getTo()
      +
      Gets the value of the to property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTo

      +
      public void setTo(String value)
      +
      Sets the value of the to property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Base
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Base
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Base
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/TimeDerivative.html b/org/neuroml/model/TimeDerivative.html new file mode 100644 index 00000000..d857d205 --- /dev/null +++ b/org/neuroml/model/TimeDerivative.html @@ -0,0 +1,326 @@ + + + + +TimeDerivative (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class TimeDerivative

+
+
java.lang.Object +
org.neuroml.model.TimeDerivative
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class TimeDerivative +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for TimeDerivative complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="TimeDerivative">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <attribute name="variable" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      variable

      +
      protected String variable
      +
      +
      • +
    • +
      +

      value

      +
      protected String value
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      TimeDerivative

      +
      public TimeDerivative()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getVariable

      +
      public String getVariable()
      +
      Gets the value of the variable property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setVariable

      +
      public void setVariable(String value)
      +
      Sets the value of the variable property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getValue

      +
      public String getValue()
      +
      Gets the value of the value property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setValue

      +
      public void setValue(String value)
      +
      Sets the value of the value property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/TimedSynapticInput.html b/org/neuroml/model/TimedSynapticInput.html new file mode 100644 index 00000000..176d4fab --- /dev/null +++ b/org/neuroml/model/TimedSynapticInput.html @@ -0,0 +1,392 @@ + + + + +TimedSynapticInput (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class TimedSynapticInput

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.TimedSynapticInput
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class TimedSynapticInput +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array. + + +

Java class for TimedSynapticInput complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="TimedSynapticInput">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <sequence>
+         <element name="spike" type="{http://www.neuroml.org/schema/neuroml2}Spike" maxOccurs="unbounded" minOccurs="0"/>
+       </sequence>
+       <attribute name="synapse" use="required" type="{http://www.neuroml.org/schema/neuroml2}NmlId" />
+       <attribute name="spikeTarget" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      spike

      +
      protected List<Spike> spike
      +
      +
      • +
    • +
      +

      synapse

      +
      protected String synapse
      +
      +
      • +
    • +
      +

      spikeTarget

      +
      protected String spikeTarget
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      TimedSynapticInput

      +
      public TimedSynapticInput()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getSpike

      +
      public List<Spike> getSpike()
      +
      Gets the value of the spike property. + +

      + This accessor method returns a reference to the live list, + not a snapshot. Therefore any modification you make to the + returned list will be present inside the JAXB object. + This is why there is not a set method for the spike property. + +

      + For example, to add a new item, do as follows: + 

      +    getSpike().add(newItem);
+
      + + +

      + Objects of the following type(s) are allowed in the list + Spike

      +
      +
      • +
    • +
      +

      getSynapse

      +
      public String getSynapse()
      +
      Gets the value of the synapse property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse

      +
      public void setSynapse(String value)
      +
      Sets the value of the synapse property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSpikeTarget

      +
      public String getSpikeTarget()
      +
      Gets the value of the spikeTarget property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSpikeTarget

      +
      public void setSpikeTarget(String value)
      +
      Sets the value of the spikeTarget property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/TransientPoissonFiringSynapse.html b/org/neuroml/model/TransientPoissonFiringSynapse.html new file mode 100644 index 00000000..3f41ec19 --- /dev/null +++ b/org/neuroml/model/TransientPoissonFiringSynapse.html @@ -0,0 +1,491 @@ + + + + +TransientPoissonFiringSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class TransientPoissonFiringSynapse

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.TransientPoissonFiringSynapse
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class TransientPoissonFiringSynapse +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current. Similar to ComponentType **poissonFiringSynapse** . + \n + :param averageRate: + :type averageRate: per_time + :param delay: + :type delay: time + :param duration: + :type duration: time + + + +

Java class for TransientPoissonFiringSynapse complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="TransientPoissonFiringSynapse">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="averageRate" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_pertime" />
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="synapse" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="spikeTarget" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      averageRate

      +
      protected String averageRate
      +
      +
      • +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      synapse

      +
      protected String synapse
      +
      +
      • +
    • +
      +

      spikeTarget

      +
      protected String spikeTarget
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      TransientPoissonFiringSynapse

      +
      public TransientPoissonFiringSynapse()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getAverageRate

      +
      public String getAverageRate()
      +
      Gets the value of the averageRate property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setAverageRate

      +
      public void setAverageRate(String value)
      +
      Sets the value of the averageRate property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSynapse

      +
      public String getSynapse()
      +
      Gets the value of the synapse property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSynapse

      +
      public void setSynapse(String value)
      +
      Sets the value of the synapse property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSpikeTarget

      +
      public String getSpikeTarget()
      +
      Gets the value of the spikeTarget property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSpikeTarget

      +
      public void setSpikeTarget(String value)
      +
      Sets the value of the spikeTarget property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/Transition.html b/org/neuroml/model/Transition.html new file mode 100644 index 00000000..728c9007 --- /dev/null +++ b/org/neuroml/model/Transition.html @@ -0,0 +1,282 @@ + + + + +Transition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class Transition

+
+
java.lang.Object +
org.neuroml.model.Transition
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class Transition +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for Transition complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="Transition">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <attribute name="regime" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      regime

      +
      protected String regime
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Transition

      +
      public Transition()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getRegime

      +
      public String getRegime()
      +
      Gets the value of the regime property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setRegime

      +
      public void setRegime(String value)
      +
      Sets the value of the regime property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/TrueOrFalse.html b/org/neuroml/model/TrueOrFalse.html new file mode 100644 index 00000000..48c0a71e --- /dev/null +++ b/org/neuroml/model/TrueOrFalse.html @@ -0,0 +1,252 @@ + + + + +TrueOrFalse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Enum TrueOrFalse

+
+
java.lang.Object +
java.lang.Enum<TrueOrFalse> +
org.neuroml.model.TrueOrFalse
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<TrueOrFalse>, java.lang.constant.Constable
+
+
+
public enum TrueOrFalse +extends Enum<TrueOrFalse>
+

Java class for TrueOrFalse. + +

The following schema fragment specifies the expected content contained within this class. +

+ 

+ <simpleType name="TrueOrFalse">
+   <restriction base="{http://www.w3.org/2001/XMLSchema}string">
+     <enumeration value="true"/>
+     <enumeration value="false"/>
+   </restriction>
+ </simpleType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    +
      +
    • +
      +

      TRUE

      +
      public static final TrueOrFalse TRUE
      +
      +
      • +
    • +
      +

      FALSE

      +
      public static final TrueOrFalse FALSE
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static TrueOrFalse[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static TrueOrFalse valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    • +
      +

      value

      +
      public String value()
      +
      +
      • +
    • +
      +

      fromValue

      +
      public static TrueOrFalse fromValue(String v)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/UnstructuredLayout.html b/org/neuroml/model/UnstructuredLayout.html new file mode 100644 index 00000000..bf2d33cd --- /dev/null +++ b/org/neuroml/model/UnstructuredLayout.html @@ -0,0 +1,288 @@ + + + + +UnstructuredLayout (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class UnstructuredLayout

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.UnstructuredLayout
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class UnstructuredLayout +extends BaseWithoutId +implements org.jvnet.jaxb2_commons.lang.ToString2
+

Java class for UnstructuredLayout complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="UnstructuredLayout">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}BaseWithoutId">
+       <attribute name="number" type="{http://www.w3.org/2001/XMLSchema}nonNegativeInteger" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      UnstructuredLayout

      +
      public UnstructuredLayout()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getNumber

      +
      public BigInteger getNumber()
      +
      Gets the value of the number property.
      +
      +
      Returns:
      +
      possible object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      setNumber

      +
      public void setNumber(BigInteger value)
      +
      Sets the value of the number property.
      +
      +
      Parameters:
      +
      value - allowed object is + BigInteger
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class BaseWithoutId
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class BaseWithoutId
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/VariableParameter.html b/org/neuroml/model/VariableParameter.html new file mode 100644 index 00000000..a2dc0cba --- /dev/null +++ b/org/neuroml/model/VariableParameter.html @@ -0,0 +1,375 @@ + + + + +VariableParameter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class VariableParameter

+
+
java.lang.Object +
org.neuroml.model.VariableParameter
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class VariableParameter +extends Object +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Specifies a **parameter** ( e. g. condDensity ) which can vary its value across a **segmentGroup.** The value is calculated from **value** attribute of the **inhomogeneousValue** subelement. This element is normally a child of **channelDensityNonUniform** , **channelDensityNonUniformNernst** or **channelDensityNonUniformGHK** and is used to calculate the value of the conductance, etc. which will vary on different parts of the cell. The **segmentGroup** specified here needs to define an **inhomogeneousParameter** ( referenced from **inhomogeneousParameter** in the **inhomogeneousValue** ), which calculates a **variable** ( e. g. p ) varying across the cell ( e. g. based on the path length from soma ), which is then used in the **value** attribute of the **inhomogeneousValue** ( so for example condDensity = f( p ) ) + + +

Java class for VariableParameter complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="VariableParameter">
+   <complexContent>
+     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+       <sequence>
+         <element name="inhomogeneousValue" type="{http://www.neuroml.org/schema/neuroml2}InhomogeneousValue" minOccurs="0"/>
+       </sequence>
+       <attribute name="parameter" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+       <attribute name="segmentGroup" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     </restriction>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      inhomogeneousValue

      +
      protected InhomogeneousValue inhomogeneousValue
      +
      +
      • +
    • +
      +

      parameter

      +
      protected String parameter
      +
      +
      • +
    • +
      +

      segmentGroup

      +
      protected String segmentGroup
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      VariableParameter

      +
      public VariableParameter()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getInhomogeneousValue

      +
      public InhomogeneousValue getInhomogeneousValue()
      +
      Gets the value of the inhomogeneousValue property.
      +
      +
      Returns:
      +
      possible object is + InhomogeneousValue
      +
      +
      +
      • +
    • +
      +

      setInhomogeneousValue

      +
      public void setInhomogeneousValue(InhomogeneousValue value)
      +
      Sets the value of the inhomogeneousValue property.
      +
      +
      Parameters:
      +
      value - allowed object is + InhomogeneousValue
      +
      +
      +
      • +
    • +
      +

      getParameter

      +
      public String getParameter()
      +
      Gets the value of the parameter property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setParameter

      +
      public void setParameter(String value)
      +
      Sets the value of the parameter property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSegmentGroup

      +
      public String getSegmentGroup()
      +
      Gets the value of the segmentGroup property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSegmentGroup

      +
      public void setSegmentGroup(String value)
      +
      Sets the value of the segmentGroup property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Object
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/VoltageClamp.html b/org/neuroml/model/VoltageClamp.html new file mode 100644 index 00000000..7378120c --- /dev/null +++ b/org/neuroml/model/VoltageClamp.html @@ -0,0 +1,449 @@ + + + + +VoltageClamp (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class VoltageClamp

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.VoltageClamp
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class VoltageClamp +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Voltage clamp. Applies a variable current **i** to try to keep parent at **targetVoltage.** Not yet fully tested!!! Consider using voltageClampTriple!! + \n + :param delay: Delay before change in current. Current is zero prior to this. + :type delay: time + :param duration: Duration for attempting to keep parent at targetVoltage. Current is zero after delay + duration. + :type duration: time + :param targetVoltage: Current will be applied to try to get parent to this target voltage + :type targetVoltage: voltage + :param simpleSeriesResistance: Current will be calculated by the difference in voltage between the target and parent, divided by this value + :type simpleSeriesResistance: resistance + + + +

Java class for VoltageClamp complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="VoltageClamp">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="targetVoltage" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="simpleSeriesResistance" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_resistance" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      targetVoltage

      +
      protected String targetVoltage
      +
      +
      • +
    • +
      +

      simpleSeriesResistance

      +
      protected String simpleSeriesResistance
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      VoltageClamp

      +
      public VoltageClamp()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTargetVoltage

      +
      public String getTargetVoltage()
      +
      Gets the value of the targetVoltage property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTargetVoltage

      +
      public void setTargetVoltage(String value)
      +
      Sets the value of the targetVoltage property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSimpleSeriesResistance

      +
      public String getSimpleSeriesResistance()
      +
      Gets the value of the simpleSeriesResistance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSimpleSeriesResistance

      +
      public void setSimpleSeriesResistance(String value)
      +
      Sets the value of the simpleSeriesResistance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/VoltageClampTriple.html b/org/neuroml/model/VoltageClampTriple.html new file mode 100644 index 00000000..2f840bb8 --- /dev/null +++ b/org/neuroml/model/VoltageClampTriple.html @@ -0,0 +1,577 @@ + + + + +VoltageClampTriple (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model
+

Class VoltageClampTriple

+
+
java.lang.Object +
org.neuroml.model.BaseWithoutId +
org.neuroml.model.Base +
org.neuroml.model.Standalone +
org.neuroml.model.VoltageClampTriple
+
+
+
+
+
+
+
All Implemented Interfaces:
+
org.jvnet.jaxb2_commons.lang.ToString2
+
+
+
public class VoltageClampTriple +extends Standalone +implements org.jvnet.jaxb2_commons.lang.ToString2
+
Voltage clamp with 3 clamp levels. Applies a variable current **i** ( through **simpleSeriesResistance** ) to try to keep parent cell at **conditioningVoltage** until time **delay,** **testingVoltage** until **delay** + **duration,** and **returnVoltage** afterwards. Only enabled if **active** = 1. + \n + :param active: Whether the voltage clamp is active ( 1 ) or inactive ( 0 ). + :type active: none + :param delay: Delay before switching from conditioningVoltage to testingVoltage. + :type delay: time + :param duration: Duration to hold at testingVoltage. + :type duration: time + :param conditioningVoltage: Target voltage before time delay + :type conditioningVoltage: voltage + :param testingVoltage: Target voltage between times delay and delay + duration + :type testingVoltage: voltage + :param returnVoltage: Target voltage after time duration + :type returnVoltage: voltage + :param simpleSeriesResistance: Current will be calculated by the difference in voltage between the target and parent, divided by this value + :type simpleSeriesResistance: resistance + + + +

Java class for VoltageClampTriple complex type. + +

The following schema fragment specifies the expected content contained within this class. + + 

+ <complexType name="VoltageClampTriple">
+   <complexContent>
+     <extension base="{http://www.neuroml.org/schema/neuroml2}Standalone">
+       <attribute name="active" use="required" type="{http://www.neuroml.org/schema/neuroml2}ZeroOrOne" />
+       <attribute name="delay" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="duration" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_time" />
+       <attribute name="conditioningVoltage" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="testingVoltage" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="returnVoltage" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_voltage" />
+       <attribute name="simpleSeriesResistance" use="required" type="{http://www.neuroml.org/schema/neuroml2}Nml2Quantity_resistance" />
+     </extension>
+   </complexContent>
+ </complexType>
+
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      active

      +
      protected double active
      +
      +
      • +
    • +
      +

      delay

      +
      protected String delay
      +
      +
      • +
    • +
      +

      duration

      +
      protected String duration
      +
      +
      • +
    • +
      +

      conditioningVoltage

      +
      protected String conditioningVoltage
      +
      +
      • +
    • +
      +

      testingVoltage

      +
      protected String testingVoltage
      +
      +
      • +
    • +
      +

      returnVoltage

      +
      protected String returnVoltage
      +
      +
      • +
    • +
      +

      simpleSeriesResistance

      +
      protected String simpleSeriesResistance
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      VoltageClampTriple

      +
      public VoltageClampTriple()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getActive

      +
      public double getActive()
      +
      Gets the value of the active property.
      +
      +
      • +
    • +
      +

      setActive

      +
      public void setActive(double value)
      +
      Sets the value of the active property.
      +
      +
      • +
    • +
      +

      getDelay

      +
      public String getDelay()
      +
      Gets the value of the delay property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDelay

      +
      public void setDelay(String value)
      +
      Sets the value of the delay property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getDuration

      +
      public String getDuration()
      +
      Gets the value of the duration property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setDuration

      +
      public void setDuration(String value)
      +
      Sets the value of the duration property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getConditioningVoltage

      +
      public String getConditioningVoltage()
      +
      Gets the value of the conditioningVoltage property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setConditioningVoltage

      +
      public void setConditioningVoltage(String value)
      +
      Sets the value of the conditioningVoltage property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getTestingVoltage

      +
      public String getTestingVoltage()
      +
      Gets the value of the testingVoltage property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setTestingVoltage

      +
      public void setTestingVoltage(String value)
      +
      Sets the value of the testingVoltage property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getReturnVoltage

      +
      public String getReturnVoltage()
      +
      Gets the value of the returnVoltage property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setReturnVoltage

      +
      public void setReturnVoltage(String value)
      +
      Sets the value of the returnVoltage property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      getSimpleSeriesResistance

      +
      public String getSimpleSeriesResistance()
      +
      Gets the value of the simpleSeriesResistance property.
      +
      +
      Returns:
      +
      possible object is + String
      +
      +
      +
      • +
    • +
      +

      setSimpleSeriesResistance

      +
      public void setSimpleSeriesResistance(String value)
      +
      Sets the value of the simpleSeriesResistance property.
      +
      +
      Parameters:
      +
      value - allowed object is + String
      +
      +
      +
      • +
    • +
      +

      toString

      +
      public String toString()
      +
      +
      Overrides:
      +
      toString in class Standalone
      +
      +
      +
      • +
    • +
      +

      append

      +
      public StringBuilder append(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      append in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      append in class Standalone
      +
      +
      +
      • +
    • +
      +

      appendFields

      +
      public StringBuilder appendFields(org.jvnet.jaxb2_commons.locator.ObjectLocator locator, + StringBuilder buffer, + org.jvnet.jaxb2_commons.lang.ToStringStrategy2 strategy)
      +
      +
      Specified by:
      +
      appendFields in interface org.jvnet.jaxb2_commons.lang.ToString2
      +
      Overrides:
      +
      appendFields in class Standalone
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/AdExIaFCell.html b/org/neuroml/model/class-use/AdExIaFCell.html new file mode 100644 index 00000000..2c1c711c --- /dev/null +++ b/org/neuroml/model/class-use/AdExIaFCell.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.AdExIaFCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.AdExIaFCell

+
+
Packages that use AdExIaFCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Adapter1.html b/org/neuroml/model/class-use/Adapter1.html new file mode 100644 index 00000000..0d247682 --- /dev/null +++ b/org/neuroml/model/class-use/Adapter1.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.Adapter1 (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Adapter1

+
+No usage of org.neuroml.model.Adapter1
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Adapter2.html b/org/neuroml/model/class-use/Adapter2.html new file mode 100644 index 00000000..f127ca36 --- /dev/null +++ b/org/neuroml/model/class-use/Adapter2.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.Adapter2 (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Adapter2

+
+No usage of org.neuroml.model.Adapter2
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/AllowedSpaces.html b/org/neuroml/model/class-use/AllowedSpaces.html new file mode 100644 index 00000000..e1e6e289 --- /dev/null +++ b/org/neuroml/model/class-use/AllowedSpaces.html @@ -0,0 +1,123 @@ + + + + +Uses of Enum org.neuroml.model.AllowedSpaces (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Enum
org.neuroml.model.AllowedSpaces

+
+
Packages that use AllowedSpaces
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/AlphaCondSynapse.html b/org/neuroml/model/class-use/AlphaCondSynapse.html new file mode 100644 index 00000000..c9b6ada0 --- /dev/null +++ b/org/neuroml/model/class-use/AlphaCondSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.AlphaCondSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.AlphaCondSynapse

+
+
Packages that use AlphaCondSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/AlphaCurrSynapse.html b/org/neuroml/model/class-use/AlphaCurrSynapse.html new file mode 100644 index 00000000..6f232833 --- /dev/null +++ b/org/neuroml/model/class-use/AlphaCurrSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.AlphaCurrSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.AlphaCurrSynapse

+
+
Packages that use AlphaCurrSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/AlphaCurrentSynapse.html b/org/neuroml/model/class-use/AlphaCurrentSynapse.html new file mode 100644 index 00000000..47f0272f --- /dev/null +++ b/org/neuroml/model/class-use/AlphaCurrentSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.AlphaCurrentSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.AlphaCurrentSynapse

+
+
Packages that use AlphaCurrentSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/AlphaSynapse.html b/org/neuroml/model/class-use/AlphaSynapse.html new file mode 100644 index 00000000..8c3d8115 --- /dev/null +++ b/org/neuroml/model/class-use/AlphaSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.AlphaSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.AlphaSynapse

+
+
Packages that use AlphaSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Annotation.html b/org/neuroml/model/class-use/Annotation.html new file mode 100644 index 00000000..7ae1a8c9 --- /dev/null +++ b/org/neuroml/model/class-use/Annotation.html @@ -0,0 +1,127 @@ + + + + +Uses of Class org.neuroml.model.Annotation (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Annotation

+
+
Packages that use Annotation
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Base.html b/org/neuroml/model/class-use/Base.html new file mode 100644 index 00000000..0f8f1943 --- /dev/null +++ b/org/neuroml/model/class-use/Base.html @@ -0,0 +1,1107 @@ + + + + +Uses of Class org.neuroml.model.Base (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Base

+
+
Packages that use Base
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of Base in org.neuroml.model

    +
    Subclasses of Base in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    AdExIaFCell
    +
    +
    Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
    +
    +
    class 
    +
    AlphaCondSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    class 
    +
    AlphaCurrentSynapse
    +
    +
    Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current
    +
    +
    class 
    +
    AlphaCurrSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    class 
    +
    AlphaSynapse
    +
    +
    Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    BaseCell
    +
    +
    Base type of any cell ( e.
    +
    +
    class 
    +
    BaseCellMembPotCap
    +
    +
    Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    BaseConductanceBasedSynapse
    +
    +
    Synapse model which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseConductanceBasedSynapseTwo
    +
    +
    Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseCurrentBasedSynapse
    +
    +
    Synapse model which produces a synaptic current.
    +
    +
    class 
    +
    BaseProjection
    +
    +
    Base for projection (set of synaptic connections) between two populations
    +
    +
    class 
    +
    BasePyNNCell
    +
    +
    Base type of any PyNN standard cell model.
    +
    +
    class 
    +
    BasePyNNIaFCell
    +
    +
    Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    BasePyNNIaFCondCell
    +
    +
    Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    BasePynnSynapse
    +
    +
    Base type for all PyNN synapses.
    +
    +
    class 
    +
    BaseSynapse
    +
    +
    Base type for all synapses, i.
    +
    +
    class 
    +
    BaseVoltageDepSynapse
    +
    +
    Base type for synapses with a dependence on membrane potential
    +
    +
    class 
    +
    BiophysicalProperties
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
    +
    +
    class 
    +
    BiophysicalProperties2CaPools
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
    +
    +
    class 
    +
    BlockingPlasticSynapse
    +
    +
    Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
    +
    +
    class 
    +
    Cell
    +
    +
    Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
    +
    +
    class 
    +
    Cell2CaPools
    +
    +
    Variant of cell with two independent Ca2+ pools.
    +
    +
    class 
    +
    CellSet
    +
    +
    Java class for CellSet complex type.
    +
    +
    class 
    +
    ChannelDensity
    +
    +
    Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** + \n + :param erev: The reversal potential of the current produced + :type erev: voltage + :param condDensity: + :type condDensity: conductanceDensity
    +
    +
    class 
    +
    ChannelDensityGHK
    +
    +
    Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation.
    +
    +
    class 
    +
    ChannelDensityGHK2
    +
    +
    Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al.
    +
    +
    class 
    +
    ChannelDensityNernst
    +
    +
    Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation.
    +
    +
    class 
    +
    ChannelDensityNernstCa2
    +
    +
    This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ).
    +
    +
    class 
    +
    ChannelDensityNonUniform
    +
    +
    Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** .
    +
    +
    class 
    +
    ChannelDensityNonUniformGHK
    +
    +
    Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation.
    +
    +
    class 
    +
    ChannelDensityNonUniformNernst
    +
    +
    Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation.
    +
    +
    class 
    +
    ChannelDensityVShift
    +
    +
    Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    class 
    +
    ChannelPopulation
    +
    +
    Population of a **number** of ohmic ion channels.
    +
    +
    class 
    +
    ClosedState
    +
    +
    A **KSState** with **relativeConductance** of 0 + \n + :param relativeConductance: + :type relativeConductance: none
    +
    +
    class 
    +
    CompoundInput
    +
    +
    Generates a current which is the sum of all its child **basePointCurrent** element, e.
    +
    +
    class 
    +
    CompoundInputDL
    +
    +
    Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
    +
    +
    class 
    +
    ConcentrationModelD
    +
    +
    Java class for ConcentrationModel_D complex type.
    +
    +
    class 
    +
    ContinuousProjection
    +
    +
    A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** .
    +
    +
    class 
    +
    DecayingPoolConcentrationModel
    +
    +
    Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param shellThickness: + :type shellThickness: length
    +
    +
    class 
    +
    DoubleSynapse
    +
    +
    Synapse consisting of two independent synaptic mechanisms ( e.
    +
    +
    class 
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    ElectricalProjection
    +
    +
    A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions.
    +
    +
    class 
    +
    ExpCondSynapse
    +
    +
    Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none
    +
    +
    class 
    +
    ExpCurrSynapse
    +
    +
    Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none
    +
    +
    class 
    +
    ExpOneSynapse
    +
    +
    Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    ExpThreeSynapse
    +
    +
    Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
    +
    +
    class 
    +
    ExpTwoSynapse
    +
    +
    Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    ExtracellularProperties
    +
    +
    Java class for ExtracellularProperties complex type.
    +
    +
    class 
    +
    ExtracellularPropertiesLocal
    +
    +
    Java class for ExtracellularPropertiesLocal complex type.
    +
    +
    class 
    +
    FitzHughNagumo1969Cell
    +
    +
    The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
    +
    +
    class 
    +
    FitzHughNagumoCell
    +
    +
    Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
    +
    +
    class 
    +
    FixedFactorConcentrationModel
    +
    +
    Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
    +
    +
    class 
    +
    ForwardTransition
    +
    +
    A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
    +
    +
    class 
    +
    GapJunction
    +
    +
    Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance
    +
    +
    class 
    +
    GateFractional
    +
    +
    Gate composed of subgates contributing with fractional conductance + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateFractionalSubgate
    +
    +
    Java class for GateFractionalSubgate complex type.
    +
    +
    class 
    +
    GateHHInstantaneous
    +
    +
    Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHRates
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHRatesInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHRatesTau
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHRatesTauInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHTauInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHUndetermined
    +
    +
    Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc.
    +
    +
    class 
    +
    GateKS
    +
    +
    A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GradedSynapse
    +
    +
    Graded/analog synapse.
    +
    +
    class 
    +
    HHCondExp
    +
    +
    Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
    +
    +
    class 
    +
    HindmarshRose1984Cell
    +
    +
    The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
    +
    +
    class 
    +
    IafCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IafRefCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IafTauCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    class 
    +
    IafTauRefCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    class 
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrExp
    +
    +
    Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    InhomogeneousParameter
    +
    +
    An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ).
    +
    +
    class 
    +
    InputList
    +
    +
    An explicit list of **input** s to a **population.**
    +
    +
    class 
    +
    IonChannel
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    class 
    +
    IonChannelHH
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    class 
    +
    IonChannelKS
    +
    +
    A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param conductance: + :type conductance: conductance
    +
    +
    class 
    +
    IonChannelScalable
    +
    +
    Java class for IonChannelScalable complex type.
    +
    +
    class 
    +
    IonChannelVShift
    +
    +
    Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    class 
    +
    Izhikevich2007Cell
    +
    +
    Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IzhikevichCell
    +
    +
    Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage
    +
    +
    class 
    +
    LinearGradedSynapse
    +
    +
    Behaves just like a one way gap junction.
    +
    +
    class 
    +
    Morphology
    +
    +
    The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
    +
    +
    class 
    +
    Network
    +
    +
    Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
    +
    +
    class 
    +
    NeuroMLDocument
    +
    +
    Java class for NeuroMLDocument complex type.
    +
    +
    class 
    +
    OpenState
    +
    +
    A **KSState** with **relativeConductance** of 1 + \n + :param relativeConductance: + :type relativeConductance: none
    +
    +
    class 
    +
    PinskyRinzelCA3Cell
    +
    +
    Reduced CA3 cell model from Pinsky, P.
    +
    +
    class 
    +
    PoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
    +
    +
    class 
    +
    Population
    +
    +
    A population of components, with just one parameter for the **size,** i.
    +
    +
    class 
    +
    Projection
    +
    +
    Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements.
    +
    +
    class 
    +
    PulseGenerator
    +
    +
    Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    class 
    +
    PulseGeneratorDL
    +
    +
    Dimensionless equivalent of **pulseGenerator** .
    +
    +
    class 
    +
    RampGenerator
    +
    +
    Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    class 
    +
    RampGeneratorDL
    +
    +
    Dimensionless equivalent of **rampGenerator** .
    +
    +
    class 
    +
    ReactionScheme
    +
    +
    Java class for ReactionScheme complex type.
    +
    +
    class 
    +
    Region
    +
    +
    Initial attempt to specify 3D region for placing cells.
    +
    +
    class 
    +
    ReverseTransition
    +
    +
    A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
    +
    +
    class 
    +
    SegmentGroup
    +
    +
    A method to describe a group of **segment** s in a **morphology** , e.
    +
    +
    class 
    +
    SilentSynapse
    +
    +
    Dummy synapse which emits no current.
    +
    +
    class 
    +
    SineGenerator
    +
    +
    Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
    +
    +
    class 
    +
    SineGeneratorDL
    +
    +
    Dimensionless equivalent of **sineGenerator** .
    +
    +
    class 
    +
    Space
    +
    +
    Java class for Space complex type.
    +
    +
    class 
    +
    Species
    +
    +
    Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration + \n + :param initialConcentration: + :type initialConcentration: concentration + :param initialExtConcentration: + :type initialExtConcentration: concentration
    +
    +
    class 
    +
    SpikeArray
    +
    +
    Set of spike ComponentTypes, each emitting one spike at a certain time.
    +
    +
    class 
    +
    SpikeGenerator
    +
    +
    Simple generator of spikes at a regular interval set by **period** + \n + :param period: Time between spikes.
    +
    +
    class 
    +
    SpikeGeneratorPoisson
    +
    +
    Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    class 
    +
    SpikeGeneratorRandom
    +
    +
    Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** + \n + :param maxISI: Maximum interspike interval + :type maxISI: time + :param minISI: Minimum interspike interval + :type minISI: time
    +
    +
    class 
    +
    SpikeGeneratorRefPoisson
    +
    +
    Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** + \n + :param minimumISI: The minimum interspike interval + :type minimumISI: time + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    class 
    +
    SpikeSourcePoisson
    +
    +
    Spike source, generating spikes according to a Poisson process.
    +
    +
    class 
    +
    Standalone
    +
    +
    Elements which can stand alone and be referenced by id, e.g.
    +
    +
    class 
    +
    TauInfTransition
    +
    +
    KS Transition specified in terms of time constant **tau** and steady state **inf**
    +
    +
    class 
    +
    TimedSynapticInput
    +
    +
    Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
    +
    +
    class 
    +
    TransientPoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
    +
    +
    class 
    +
    VoltageClamp
    +
    +
    Voltage clamp.
    +
    +
    class 
    +
    VoltageClampTriple
    +
    +
    Voltage clamp with 3 clamp levels.
    +
    +
    +
    Fields in org.neuroml.model with type parameters of type Base
    +
    +
    Modifier and Type
    +
    Field
    +
    Description
    +
    protected List<Base>
    +
    GateKS.forwardTransitionAndReverseTransitionOrTauInfTransition
    +
     
    +
    +
    Methods in org.neuroml.model that return Base
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    Base
    +
    ObjectFactory.createBase()
    +
    +
    Create an instance of Base
    +
    +
    +
    Methods in org.neuroml.model that return types with arguments of type Base
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    List<Base>
    +
    GateKS.getForwardTransitionAndReverseTransitionOrTauInfTransition()
    +
    +
    Gets the value of the forwardTransitionAndReverseTransitionOrTauInfTransition property.
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseCell.html b/org/neuroml/model/class-use/BaseCell.html new file mode 100644 index 00000000..d874b75c --- /dev/null +++ b/org/neuroml/model/class-use/BaseCell.html @@ -0,0 +1,524 @@ + + + + +Uses of Class org.neuroml.model.BaseCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseCell

+
+
Packages that use BaseCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BaseCell in org.neuroml.model

    +
    Subclasses of BaseCell in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    AdExIaFCell
    +
    +
    Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
    +
    +
    class 
    +
    BaseCellMembPotCap
    +
    +
    Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    BasePyNNCell
    +
    +
    Base type of any PyNN standard cell model.
    +
    +
    class 
    +
    BasePyNNIaFCell
    +
    +
    Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    BasePyNNIaFCondCell
    +
    +
    Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    Cell
    +
    +
    Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
    +
    +
    class 
    +
    Cell2CaPools
    +
    +
    Variant of cell with two independent Ca2+ pools.
    +
    +
    class 
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    FitzHughNagumo1969Cell
    +
    +
    The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
    +
    +
    class 
    +
    FitzHughNagumoCell
    +
    +
    Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
    +
    +
    class 
    +
    HHCondExp
    +
    +
    Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
    +
    +
    class 
    +
    HindmarshRose1984Cell
    +
    +
    The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
    +
    +
    class 
    +
    IafCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IafRefCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IafTauCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    class 
    +
    IafTauRefCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    class 
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrExp
    +
    +
    Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    Izhikevich2007Cell
    +
    +
    Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IzhikevichCell
    +
    +
    Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage
    +
    +
    class 
    +
    PinskyRinzelCA3Cell
    +
    +
    Reduced CA3 cell model from Pinsky, P.
    +
    +
    +
    Fields in org.neuroml.model with type parameters of type BaseCell
    +
    +
    Modifier and Type
    +
    Field
    +
    Description
    +
    protected List<BaseCell>
    +
    NeuroMLDocument.baseCell
    +
     
    +
    +
    Methods in org.neuroml.model that return BaseCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BaseCell
    +
    ObjectFactory.createBaseCell()
    +
    +
    Create an instance of BaseCell
    +
    +
    +
    Methods in org.neuroml.model that return types with arguments of type BaseCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    List<BaseCell>
    +
    NeuroMLDocument.getBaseCell()
    +
    +
    Gets the value of the baseCell property.
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseCellMembPotCap.html b/org/neuroml/model/class-use/BaseCellMembPotCap.html new file mode 100644 index 00000000..48c1c172 --- /dev/null +++ b/org/neuroml/model/class-use/BaseCellMembPotCap.html @@ -0,0 +1,131 @@ + + + + +Uses of Class org.neuroml.model.BaseCellMembPotCap (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseCellMembPotCap

+
+
Packages that use BaseCellMembPotCap
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BaseCellMembPotCap in org.neuroml.model

    +
    Subclasses of BaseCellMembPotCap in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    AdExIaFCell
    +
    +
    Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
    +
    +
    class 
    +
    HindmarshRose1984Cell
    +
    +
    The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
    +
    +
    class 
    +
    Izhikevich2007Cell
    +
    +
    Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    +
    Methods in org.neuroml.model that return BaseCellMembPotCap
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BaseCellMembPotCap
    +
    ObjectFactory.createBaseCellMembPotCap()
    +
    +
    Create an instance of BaseCellMembPotCap
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseConductanceBasedSynapse.html b/org/neuroml/model/class-use/BaseConductanceBasedSynapse.html new file mode 100644 index 00000000..b38004f1 --- /dev/null +++ b/org/neuroml/model/class-use/BaseConductanceBasedSynapse.html @@ -0,0 +1,138 @@ + + + + +Uses of Class org.neuroml.model.BaseConductanceBasedSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseConductanceBasedSynapse

+
+
Packages that use BaseConductanceBasedSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BaseConductanceBasedSynapse in org.neuroml.model

    +
    Subclasses of BaseConductanceBasedSynapse in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    AlphaSynapse
    +
    +
    Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    BlockingPlasticSynapse
    +
    +
    Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
    +
    +
    class 
    +
    ExpOneSynapse
    +
    +
    Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    ExpTwoSynapse
    +
    +
    Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    +
    Methods in org.neuroml.model that return BaseConductanceBasedSynapse
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BaseConductanceBasedSynapse
    +
    ObjectFactory.createBaseConductanceBasedSynapse()
    +
    +
    Create an instance of BaseConductanceBasedSynapse
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseConductanceBasedSynapseTwo.html b/org/neuroml/model/class-use/BaseConductanceBasedSynapseTwo.html new file mode 100644 index 00000000..af18b16d --- /dev/null +++ b/org/neuroml/model/class-use/BaseConductanceBasedSynapseTwo.html @@ -0,0 +1,100 @@ + + + + +Uses of Class org.neuroml.model.BaseConductanceBasedSynapseTwo (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseConductanceBasedSynapseTwo

+
+
Packages that use BaseConductanceBasedSynapseTwo
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseConnection.html b/org/neuroml/model/class-use/BaseConnection.html new file mode 100644 index 00000000..7e176100 --- /dev/null +++ b/org/neuroml/model/class-use/BaseConnection.html @@ -0,0 +1,169 @@ + + + + +Uses of Class org.neuroml.model.BaseConnection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseConnection

+
+
Packages that use BaseConnection
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseConnectionNewFormat.html b/org/neuroml/model/class-use/BaseConnectionNewFormat.html new file mode 100644 index 00000000..75a2ba1a --- /dev/null +++ b/org/neuroml/model/class-use/BaseConnectionNewFormat.html @@ -0,0 +1,141 @@ + + + + +Uses of Class org.neuroml.model.BaseConnectionNewFormat (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseConnectionNewFormat

+
+
Packages that use BaseConnectionNewFormat
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseConnectionOldFormat.html b/org/neuroml/model/class-use/BaseConnectionOldFormat.html new file mode 100644 index 00000000..836e7a55 --- /dev/null +++ b/org/neuroml/model/class-use/BaseConnectionOldFormat.html @@ -0,0 +1,143 @@ + + + + +Uses of Class org.neuroml.model.BaseConnectionOldFormat (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseConnectionOldFormat

+
+
Packages that use BaseConnectionOldFormat
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseCurrentBasedSynapse.html b/org/neuroml/model/class-use/BaseCurrentBasedSynapse.html new file mode 100644 index 00000000..e0a3359b --- /dev/null +++ b/org/neuroml/model/class-use/BaseCurrentBasedSynapse.html @@ -0,0 +1,105 @@ + + + + +Uses of Class org.neuroml.model.BaseCurrentBasedSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseCurrentBasedSynapse

+
+
Packages that use BaseCurrentBasedSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseNonNegativeIntegerId.html b/org/neuroml/model/class-use/BaseNonNegativeIntegerId.html new file mode 100644 index 00000000..e0602865 --- /dev/null +++ b/org/neuroml/model/class-use/BaseNonNegativeIntegerId.html @@ -0,0 +1,178 @@ + + + + +Uses of Class org.neuroml.model.BaseNonNegativeIntegerId (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseNonNegativeIntegerId

+
+
Packages that use BaseNonNegativeIntegerId
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BaseNonNegativeIntegerId in org.neuroml.model

    +
    Subclasses of BaseNonNegativeIntegerId in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    BaseConnection
    +
    +
    Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
    +
    +
    class 
    +
    BaseConnectionNewFormat
    +
    +
    Base of all synaptic connections with preCell, postSegment, etc.
    +
    +
    class 
    +
    BaseConnectionOldFormat
    +
    +
    Base of all synaptic connections with preCellId, postSegmentId, etc.
    +
    +
    class 
    +
    Connection
    +
    +
    Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component.
    +
    +
    class 
    +
    ConnectionWD
    +
    +
    Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection + \n + :param weight: + :type weight: none + :param delay: + :type delay: time
    +
    +
    class 
    +
    ContinuousConnection
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    class 
    +
    ContinuousConnectionInstance
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    class 
    +
    ContinuousConnectionInstanceW
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    class 
    +
    ElectricalConnection
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    class 
    +
    ElectricalConnectionInstance
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    class 
    +
    ElectricalConnectionInstanceW
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    class 
    +
    Input
    +
    +
    Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
    +
    +
    class 
    +
    InputW
    +
    +
    Specifies input lists.
    +
    +
    class 
    +
    Segment
    +
    +
    A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
    +
    +
    class 
    +
    Spike
    +
    +
    Emits a single spike at the specified **time** + \n + :param time: Time at which to emit one spike event + :type time: time
    +
    +
    +
    Methods in org.neuroml.model that return BaseNonNegativeIntegerId
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BaseNonNegativeIntegerId
    +
    ObjectFactory.createBaseNonNegativeIntegerId()
    +
    +
    Create an instance of BaseNonNegativeIntegerId
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseProjection.html b/org/neuroml/model/class-use/BaseProjection.html new file mode 100644 index 00000000..f412111e --- /dev/null +++ b/org/neuroml/model/class-use/BaseProjection.html @@ -0,0 +1,128 @@ + + + + +Uses of Class org.neuroml.model.BaseProjection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseProjection

+
+
Packages that use BaseProjection
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BasePyNNCell.html b/org/neuroml/model/class-use/BasePyNNCell.html new file mode 100644 index 00000000..337ac646 --- /dev/null +++ b/org/neuroml/model/class-use/BasePyNNCell.html @@ -0,0 +1,348 @@ + + + + +Uses of Class org.neuroml.model.BasePyNNCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BasePyNNCell

+
+
Packages that use BasePyNNCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BasePyNNCell in org.neuroml.model

    +
    Subclasses of BasePyNNCell in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    BasePyNNIaFCell
    +
    +
    Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    BasePyNNIaFCondCell
    +
    +
    Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    HHCondExp
    +
    +
    Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
    +
    +
    class 
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrExp
    +
    +
    Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    +
    Methods in org.neuroml.model that return BasePyNNCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BasePyNNCell
    +
    ObjectFactory.createBasePyNNCell()
    +
    +
    Create an instance of BasePyNNCell
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BasePyNNIaFCell.html b/org/neuroml/model/class-use/BasePyNNIaFCell.html new file mode 100644 index 00000000..6a21540a --- /dev/null +++ b/org/neuroml/model/class-use/BasePyNNIaFCell.html @@ -0,0 +1,317 @@ + + + + +Uses of Class org.neuroml.model.BasePyNNIaFCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BasePyNNIaFCell

+
+
Packages that use BasePyNNIaFCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BasePyNNIaFCell in org.neuroml.model

    +
    Subclasses of BasePyNNIaFCell in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    BasePyNNIaFCondCell
    +
    +
    Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrExp
    +
    +
    Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    +
    Methods in org.neuroml.model that return BasePyNNIaFCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BasePyNNIaFCell
    +
    ObjectFactory.createBasePyNNIaFCell()
    +
    +
    Create an instance of BasePyNNIaFCell
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BasePyNNIaFCondCell.html b/org/neuroml/model/class-use/BasePyNNIaFCondCell.html new file mode 100644 index 00000000..d5843bf9 --- /dev/null +++ b/org/neuroml/model/class-use/BasePyNNIaFCondCell.html @@ -0,0 +1,235 @@ + + + + +Uses of Class org.neuroml.model.BasePyNNIaFCondCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BasePyNNIaFCondCell

+
+
Packages that use BasePyNNIaFCondCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BasePyNNIaFCondCell in org.neuroml.model

    +
    Subclasses of BasePyNNIaFCondCell in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    +
    Methods in org.neuroml.model that return BasePyNNIaFCondCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BasePyNNIaFCondCell
    +
    ObjectFactory.createBasePyNNIaFCondCell()
    +
    +
    Create an instance of BasePyNNIaFCondCell
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BasePynnSynapse.html b/org/neuroml/model/class-use/BasePynnSynapse.html new file mode 100644 index 00000000..b52bc73a --- /dev/null +++ b/org/neuroml/model/class-use/BasePynnSynapse.html @@ -0,0 +1,123 @@ + + + + +Uses of Class org.neuroml.model.BasePynnSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BasePynnSynapse

+
+
Packages that use BasePynnSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseSynapse.html b/org/neuroml/model/class-use/BaseSynapse.html new file mode 100644 index 00000000..0bfc1aab --- /dev/null +++ b/org/neuroml/model/class-use/BaseSynapse.html @@ -0,0 +1,234 @@ + + + + +Uses of Class org.neuroml.model.BaseSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseSynapse

+
+
Packages that use BaseSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BaseSynapse in org.neuroml.model

    +
    Subclasses of BaseSynapse in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    AlphaCondSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    class 
    +
    AlphaCurrentSynapse
    +
    +
    Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current
    +
    +
    class 
    +
    AlphaCurrSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    class 
    +
    AlphaSynapse
    +
    +
    Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    BaseConductanceBasedSynapse
    +
    +
    Synapse model which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseConductanceBasedSynapseTwo
    +
    +
    Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseCurrentBasedSynapse
    +
    +
    Synapse model which produces a synaptic current.
    +
    +
    class 
    +
    BasePynnSynapse
    +
    +
    Base type for all PyNN synapses.
    +
    +
    class 
    +
    BaseVoltageDepSynapse
    +
    +
    Base type for synapses with a dependence on membrane potential
    +
    +
    class 
    +
    BlockingPlasticSynapse
    +
    +
    Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
    +
    +
    class 
    +
    DoubleSynapse
    +
    +
    Synapse consisting of two independent synaptic mechanisms ( e.
    +
    +
    class 
    +
    ExpCondSynapse
    +
    +
    Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none
    +
    +
    class 
    +
    ExpCurrSynapse
    +
    +
    Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none
    +
    +
    class 
    +
    ExpOneSynapse
    +
    +
    Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    ExpThreeSynapse
    +
    +
    Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
    +
    +
    class 
    +
    ExpTwoSynapse
    +
    +
    Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    GapJunction
    +
    +
    Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance
    +
    +
    class 
    +
    GradedSynapse
    +
    +
    Graded/analog synapse.
    +
    +
    class 
    +
    LinearGradedSynapse
    +
    +
    Behaves just like a one way gap junction.
    +
    +
    class 
    +
    SilentSynapse
    +
    +
    Dummy synapse which emits no current.
    +
    +
    +
    Methods in org.neuroml.model that return BaseSynapse
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BaseSynapse
    +
    ObjectFactory.createBaseSynapse()
    +
    +
    Create an instance of BaseSynapse
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseVoltageDepSynapse.html b/org/neuroml/model/class-use/BaseVoltageDepSynapse.html new file mode 100644 index 00000000..a1716689 --- /dev/null +++ b/org/neuroml/model/class-use/BaseVoltageDepSynapse.html @@ -0,0 +1,158 @@ + + + + +Uses of Class org.neuroml.model.BaseVoltageDepSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseVoltageDepSynapse

+
+
Packages that use BaseVoltageDepSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BaseVoltageDepSynapse in org.neuroml.model

    +
    Subclasses of BaseVoltageDepSynapse in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    AlphaSynapse
    +
    +
    Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    BaseConductanceBasedSynapse
    +
    +
    Synapse model which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseConductanceBasedSynapseTwo
    +
    +
    Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BlockingPlasticSynapse
    +
    +
    Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
    +
    +
    class 
    +
    DoubleSynapse
    +
    +
    Synapse consisting of two independent synaptic mechanisms ( e.
    +
    +
    class 
    +
    ExpOneSynapse
    +
    +
    Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    ExpThreeSynapse
    +
    +
    Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
    +
    +
    class 
    +
    ExpTwoSynapse
    +
    +
    Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    +
    Methods in org.neuroml.model that return BaseVoltageDepSynapse
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BaseVoltageDepSynapse
    +
    ObjectFactory.createBaseVoltageDepSynapse()
    +
    +
    Create an instance of BaseVoltageDepSynapse
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BaseWithoutId.html b/org/neuroml/model/class-use/BaseWithoutId.html new file mode 100644 index 00000000..c1faa539 --- /dev/null +++ b/org/neuroml/model/class-use/BaseWithoutId.html @@ -0,0 +1,1431 @@ + + + + +Uses of Class org.neuroml.model.BaseWithoutId (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BaseWithoutId

+
+
Packages that use BaseWithoutId
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of BaseWithoutId in org.neuroml.model

    +
    Subclasses of BaseWithoutId in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    AdExIaFCell
    +
    +
    Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
    +
    +
    class 
    +
    AlphaCondSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    class 
    +
    AlphaCurrentSynapse
    +
    +
    Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current
    +
    +
    class 
    +
    AlphaCurrSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    class 
    +
    AlphaSynapse
    +
    +
    Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    Annotation
    +
    +
    A structured annotation containing metadata, specifically RDF or **property** elements
    +
    +
    class 
    +
    Base
    +
    +
    Anything which can have a unique (within its parent) id of the form NmlId (spaceless combination of letters, numbers and underscore).
    +
    +
    class 
    +
    BaseCell
    +
    +
    Base type of any cell ( e.
    +
    +
    class 
    +
    BaseCellMembPotCap
    +
    +
    Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    BaseConductanceBasedSynapse
    +
    +
    Synapse model which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseConductanceBasedSynapseTwo
    +
    +
    Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseConnection
    +
    +
    Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
    +
    +
    class 
    +
    BaseConnectionNewFormat
    +
    +
    Base of all synaptic connections with preCell, postSegment, etc.
    +
    +
    class 
    +
    BaseConnectionOldFormat
    +
    +
    Base of all synaptic connections with preCellId, postSegmentId, etc.
    +
    +
    class 
    +
    BaseCurrentBasedSynapse
    +
    +
    Synapse model which produces a synaptic current.
    +
    +
    class 
    +
    BaseNonNegativeIntegerId
    +
    +
    Anything which can have a unique (within its parent) id, which must be an integer zero or greater.
    +
    +
    class 
    +
    BaseProjection
    +
    +
    Base for projection (set of synaptic connections) between two populations
    +
    +
    class 
    +
    BasePyNNCell
    +
    +
    Base type of any PyNN standard cell model.
    +
    +
    class 
    +
    BasePyNNIaFCell
    +
    +
    Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    BasePyNNIaFCondCell
    +
    +
    Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    BasePynnSynapse
    +
    +
    Base type for all PyNN synapses.
    +
    +
    class 
    +
    BaseSynapse
    +
    +
    Base type for all synapses, i.
    +
    +
    class 
    +
    BaseVoltageDepSynapse
    +
    +
    Base type for synapses with a dependence on membrane potential
    +
    +
    class 
    +
    BiophysicalProperties
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
    +
    +
    class 
    +
    BiophysicalProperties2CaPools
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
    +
    +
    class 
    +
    BlockingPlasticSynapse
    +
    +
    Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
    +
    +
    class 
    +
    BlockMechanism
    +
    +
    Java class for BlockMechanism complex type.
    +
    +
    class 
    +
    Cell
    +
    +
    Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
    +
    +
    class 
    +
    Cell2CaPools
    +
    +
    Variant of cell with two independent Ca2+ pools.
    +
    +
    class 
    +
    CellSet
    +
    +
    Java class for CellSet complex type.
    +
    +
    class 
    +
    ChannelDensity
    +
    +
    Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** + \n + :param erev: The reversal potential of the current produced + :type erev: voltage + :param condDensity: + :type condDensity: conductanceDensity
    +
    +
    class 
    +
    ChannelDensityGHK
    +
    +
    Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation.
    +
    +
    class 
    +
    ChannelDensityGHK2
    +
    +
    Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al.
    +
    +
    class 
    +
    ChannelDensityNernst
    +
    +
    Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation.
    +
    +
    class 
    +
    ChannelDensityNernstCa2
    +
    +
    This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ).
    +
    +
    class 
    +
    ChannelDensityNonUniform
    +
    +
    Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** .
    +
    +
    class 
    +
    ChannelDensityNonUniformGHK
    +
    +
    Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation.
    +
    +
    class 
    +
    ChannelDensityNonUniformNernst
    +
    +
    Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation.
    +
    +
    class 
    +
    ChannelDensityVShift
    +
    +
    Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    class 
    +
    ChannelPopulation
    +
    +
    Population of a **number** of ohmic ion channels.
    +
    +
    class 
    +
    ClosedState
    +
    +
    A **KSState** with **relativeConductance** of 0 + \n + :param relativeConductance: + :type relativeConductance: none
    +
    +
    class 
    +
    CompoundInput
    +
    +
    Generates a current which is the sum of all its child **basePointCurrent** element, e.
    +
    +
    class 
    +
    CompoundInputDL
    +
    +
    Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
    +
    +
    class 
    +
    ConcentrationModelD
    +
    +
    Java class for ConcentrationModel_D complex type.
    +
    +
    class 
    +
    ConditionalDerivedVariable
    +
    +
    Java class for ConditionalDerivedVariable complex type.
    +
    +
    class 
    +
    Connection
    +
    +
    Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component.
    +
    +
    class 
    +
    ConnectionWD
    +
    +
    Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection + \n + :param weight: + :type weight: none + :param delay: + :type delay: time
    +
    +
    class 
    +
    Constant
    +
    +
    LEMS ComponentType for Constant.
    +
    +
    class 
    +
    ContinuousConnection
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    class 
    +
    ContinuousConnectionInstance
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    class 
    +
    ContinuousConnectionInstanceW
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    class 
    +
    ContinuousProjection
    +
    +
    A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** .
    +
    +
    class 
    +
    DecayingPoolConcentrationModel
    +
    +
    Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param shellThickness: + :type shellThickness: length
    +
    +
    class 
    +
    DerivedParameter
    +
    +
    LEMS DerivedParamter element
    +
    +
    class 
    +
    DerivedVariable
    +
    +
    LEMS ComponentType for DerivedVariable
    +
    +
    class 
    +
    DistalDetails
    +
    +
    What to do at the distal point when creating an inhomogeneous parameter
    +
    +
    class 
    +
    DoubleSynapse
    +
    +
    Synapse consisting of two independent synaptic mechanisms ( e.
    +
    +
    class 
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    ElectricalConnection
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    class 
    +
    ElectricalConnectionInstance
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    class 
    +
    ElectricalConnectionInstanceW
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    class 
    +
    ElectricalProjection
    +
    +
    A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions.
    +
    +
    class 
    +
    ExpCondSynapse
    +
    +
    Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none
    +
    +
    class 
    +
    ExpCurrSynapse
    +
    +
    Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none
    +
    +
    class 
    +
    ExplicitInput
    +
    +
    An explicit input ( anything which extends **basePointCurrent** ) to a target cell in a population
    +
    +
    class 
    +
    ExpOneSynapse
    +
    +
    Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    Exposure
    +
    +
    LEMS Exposure (ComponentType property)
    +
    +
    class 
    +
    ExpThreeSynapse
    +
    +
    Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
    +
    +
    class 
    +
    ExpTwoSynapse
    +
    +
    Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    ExtracellularProperties
    +
    +
    Java class for ExtracellularProperties complex type.
    +
    +
    class 
    +
    ExtracellularPropertiesLocal
    +
    +
    Java class for ExtracellularPropertiesLocal complex type.
    +
    +
    class 
    +
    FitzHughNagumo1969Cell
    +
    +
    The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
    +
    +
    class 
    +
    FitzHughNagumoCell
    +
    +
    Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
    +
    +
    class 
    +
    FixedFactorConcentrationModel
    +
    +
    Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
    +
    +
    class 
    +
    ForwardTransition
    +
    +
    A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
    +
    +
    class 
    +
    GapJunction
    +
    +
    Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance
    +
    +
    class 
    +
    GateFractional
    +
    +
    Gate composed of subgates contributing with fractional conductance + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateFractionalSubgate
    +
    +
    Java class for GateFractionalSubgate complex type.
    +
    +
    class 
    +
    GateHHInstantaneous
    +
    +
    Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHRates
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHRatesInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHRatesTau
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHRatesTauInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHTauInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GateHHUndetermined
    +
    +
    Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc.
    +
    +
    class 
    +
    GateKS
    +
    +
    A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param instances: + :type instances: none
    +
    +
    class 
    +
    GradedSynapse
    +
    +
    Graded/analog synapse.
    +
    +
    class 
    +
    GridLayout
    +
    +
    Java class for GridLayout complex type.
    +
    +
    class 
    +
    HHCondExp
    +
    +
    Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
    +
    +
    class 
    +
    HHRate
    +
    +
    Java class for HHRate complex type.
    +
    +
    class 
    +
    HHTime
    +
    +
    Java class for HHTime complex type.
    +
    +
    class 
    +
    HHVariable
    +
    +
    Java class for HHVariable complex type.
    +
    +
    class 
    +
    HindmarshRose1984Cell
    +
    +
    The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
    +
    +
    class 
    +
    IafCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IafRefCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IafTauCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    class 
    +
    IafTauRefCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    class 
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrExp
    +
    +
    Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    Include
    +
    +
    Include all members of another **segmentGroup** in this group
    +
    +
    class 
    +
    InhomogeneousParameter
    +
    +
    An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ).
    +
    +
    class 
    +
    InhomogeneousValue
    +
    +
    Specifies the **value** of an **inhomogeneousParameter.** For usage see **variableParameter**
    +
    +
    class 
    +
    InitMembPotential
    +
    +
    Explicitly set initial membrane potential for the cell + \n + :param value: + :type value: voltage
    +
    +
    class 
    +
    Input
    +
    +
    Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
    +
    +
    class 
    +
    InputList
    +
    +
    An explicit list of **input** s to a **population.**
    +
    +
    class 
    +
    InputW
    +
    +
    Specifies input lists.
    +
    +
    class 
    +
    Instance
    +
    +
    Specifies a single instance of a component in a **population** ( placed at **location** ).
    +
    +
    class 
    +
    IntracellularProperties
    +
    +
    Biophysical properties related to the intracellular space within the **cell** , such as the **resistivity** and the list of ionic **species** present.
    +
    +
    class 
    +
    IntracellularProperties2CaPools
    +
    +
    Variant of intracellularProperties with 2 independent Ca pools
    +
    +
    class 
    +
    IonChannel
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    class 
    +
    IonChannelHH
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    class 
    +
    IonChannelKS
    +
    +
    A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param conductance: + :type conductance: conductance
    +
    +
    class 
    +
    IonChannelScalable
    +
    +
    Java class for IonChannelScalable complex type.
    +
    +
    class 
    +
    IonChannelVShift
    +
    +
    Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    class 
    +
    Izhikevich2007Cell
    +
    +
    Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IzhikevichCell
    +
    +
    Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage
    +
    +
    class 
    +
    Layout
    +
    +
    Java class for Layout complex type.
    +
    +
    class 
    +
    LEMSProperty
    +
    +
    Java class for LEMS_Property complex type.
    +
    +
    class 
    +
    LinearGradedSynapse
    +
    +
    Behaves just like a one way gap junction.
    +
    +
    class 
    +
    Location
    +
    +
    Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** + \n + :param x: + :type x: none + :param y: + :type y: none + :param z: + :type z: none
    +
    +
    class 
    +
    Member
    +
    +
    A single identified **segment** which is part of the **segmentGroup**
    +
    +
    class 
    +
    MembraneProperties
    +
    +
    Properties specific to the membrane, such as the **populations** of channels, **channelDensities,** **specificCapacitance,** etc.
    +
    +
    class 
    +
    MembraneProperties2CaPools
    +
    +
    Variant of membraneProperties with 2 independent Ca pools
    +
    +
    class 
    +
    Morphology
    +
    +
    The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
    +
    +
    class 
    +
    NamedDimensionalType
    +
    +
    Java class for NamedDimensionalType complex type.
    +
    +
    class 
    +
    NamedDimensionalVariable
    +
    +
    Java class for NamedDimensionalVariable complex type.
    +
    +
    class 
    +
    Network
    +
    +
    Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
    +
    +
    class 
    +
    NeuroMLDocument
    +
    +
    Java class for NeuroMLDocument complex type.
    +
    +
    class 
    +
    OpenState
    +
    +
    A **KSState** with **relativeConductance** of 1 + \n + :param relativeConductance: + :type relativeConductance: none
    +
    +
    class 
    +
    Parameter
    +
    +
    Java class for Parameter complex type.
    +
    +
    class 
    +
    Path
    +
    +
    Include all the **segment** s between those specified by **from** and **to** , inclusive
    +
    +
    class 
    +
    PinskyRinzelCA3Cell
    +
    +
    Reduced CA3 cell model from Pinsky, P.
    +
    +
    class 
    +
    PlasticityMechanism
    +
    +
    Java class for PlasticityMechanism complex type.
    +
    +
    class 
    +
    Point3DWithDiam
    +
    +
    Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ).
    +
    +
    class 
    +
    PoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
    +
    +
    class 
    +
    Population
    +
    +
    A population of components, with just one parameter for the **size,** i.
    +
    +
    class 
    +
    Projection
    +
    +
    Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements.
    +
    +
    class 
    +
    Property
    +
    +
    A property ( a **tag** and **value** pair ), which can be on any **baseStandalone** either as a direct child, or within an **Annotation** .
    +
    +
    class 
    +
    ProximalDetails
    +
    +
    What to do at the proximal point when creating an inhomogeneous parameter
    +
    +
    class 
    +
    PulseGenerator
    +
    +
    Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    class 
    +
    PulseGeneratorDL
    +
    +
    Dimensionless equivalent of **pulseGenerator** .
    +
    +
    class 
    +
    Q10ConductanceScaling
    +
    +
    A value for the conductance scaling which varies as a standard function of the difference between the current temperature, **temperature,** and the temperature at which the conductance was originally determined, **experimentalTemp** + \n + :param q10Factor: + :type q10Factor: none + :param experimentalTemp: + :type experimentalTemp: temperature
    +
    +
    class 
    +
    RampGenerator
    +
    +
    Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    class 
    +
    RampGeneratorDL
    +
    +
    Dimensionless equivalent of **rampGenerator** .
    +
    +
    class 
    +
    RandomLayout
    +
    +
    Java class for RandomLayout complex type.
    +
    +
    class 
    +
    ReactionScheme
    +
    +
    Java class for ReactionScheme complex type.
    +
    +
    class 
    +
    Region
    +
    +
    Initial attempt to specify 3D region for placing cells.
    +
    +
    class 
    +
    Requirement
    +
    +
    Java class for Requirement complex type.
    +
    +
    class 
    +
    Resistivity
    +
    +
    The resistivity, or specific axial resistance, of the cytoplasm + \n + :param value: + :type value: resistivity
    +
    +
    class 
    +
    ReverseTransition
    +
    +
    A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
    +
    +
    class 
    +
    Segment
    +
    +
    A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
    +
    +
    class 
    +
    SegmentEndPoint
    +
    +
    Java class for SegmentEndPoint complex type.
    +
    +
    class 
    +
    SegmentGroup
    +
    +
    A method to describe a group of **segment** s in a **morphology** , e.
    +
    +
    class 
    +
    SegmentParent
    +
    +
    Java class for SegmentParent complex type.
    +
    +
    class 
    +
    SilentSynapse
    +
    +
    Dummy synapse which emits no current.
    +
    +
    class 
    +
    SineGenerator
    +
    +
    Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
    +
    +
    class 
    +
    SineGeneratorDL
    +
    +
    Dimensionless equivalent of **sineGenerator** .
    +
    +
    class 
    +
    Space
    +
    +
    Java class for Space complex type.
    +
    +
    class 
    +
    SpaceStructure
    +
    +
    Java class for SpaceStructure complex type.
    +
    +
    class 
    +
    Species
    +
    +
    Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration + \n + :param initialConcentration: + :type initialConcentration: concentration + :param initialExtConcentration: + :type initialExtConcentration: concentration
    +
    +
    class 
    +
    SpecificCapacitance
    +
    +
    Capacitance per unit area + \n + :param value: + :type value: specificCapacitance
    +
    +
    class 
    +
    Spike
    +
    +
    Emits a single spike at the specified **time** + \n + :param time: Time at which to emit one spike event + :type time: time
    +
    +
    class 
    +
    SpikeArray
    +
    +
    Set of spike ComponentTypes, each emitting one spike at a certain time.
    +
    +
    class 
    +
    SpikeGenerator
    +
    +
    Simple generator of spikes at a regular interval set by **period** + \n + :param period: Time between spikes.
    +
    +
    class 
    +
    SpikeGeneratorPoisson
    +
    +
    Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    class 
    +
    SpikeGeneratorRandom
    +
    +
    Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** + \n + :param maxISI: Maximum interspike interval + :type maxISI: time + :param minISI: Minimum interspike interval + :type minISI: time
    +
    +
    class 
    +
    SpikeGeneratorRefPoisson
    +
    +
    Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** + \n + :param minimumISI: The minimum interspike interval + :type minimumISI: time + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    class 
    +
    SpikeSourcePoisson
    +
    +
    Spike source, generating spikes according to a Poisson process.
    +
    +
    class 
    +
    SpikeThresh
    +
    +
    Membrane potential at which to emit a spiking event.
    +
    +
    class 
    +
    Standalone
    +
    +
    Elements which can stand alone and be referenced by id, e.g.
    +
    +
    class 
    +
    StateVariable
    +
    +
    Java class for StateVariable complex type.
    +
    +
    class 
    +
    SubTree
    +
    +
    Include all the **segment** s distal to that specified by **from** in the **segmentGroup**
    +
    +
    class 
    +
    SynapticConnection
    +
    +
    Explicit event connection between named components, which gets processed via a new instance of a **synapse** component which is created on the target component
    +
    +
    class 
    +
    TauInfTransition
    +
    +
    KS Transition specified in terms of time constant **tau** and steady state **inf**
    +
    +
    class 
    +
    TimedSynapticInput
    +
    +
    Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
    +
    +
    class 
    +
    TransientPoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
    +
    +
    class 
    +
    UnstructuredLayout
    +
    +
    Java class for UnstructuredLayout complex type.
    +
    +
    class 
    +
    VoltageClamp
    +
    +
    Voltage clamp.
    +
    +
    class 
    +
    VoltageClampTriple
    +
    +
    Voltage clamp with 3 clamp levels.
    +
    +
    +
    Methods in org.neuroml.model that return BaseWithoutId
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    BaseWithoutId
    +
    ObjectFactory.createBaseWithoutId()
    +
    +
    Create an instance of BaseWithoutId
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BiophysicalProperties.html b/org/neuroml/model/class-use/BiophysicalProperties.html new file mode 100644 index 00000000..5bb63d83 --- /dev/null +++ b/org/neuroml/model/class-use/BiophysicalProperties.html @@ -0,0 +1,134 @@ + + + + +Uses of Class org.neuroml.model.BiophysicalProperties (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BiophysicalProperties

+
+
Packages that use BiophysicalProperties
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BiophysicalProperties2CaPools.html b/org/neuroml/model/class-use/BiophysicalProperties2CaPools.html new file mode 100644 index 00000000..5c3445c9 --- /dev/null +++ b/org/neuroml/model/class-use/BiophysicalProperties2CaPools.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.BiophysicalProperties2CaPools (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BiophysicalProperties2CaPools

+
+
Packages that use BiophysicalProperties2CaPools
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BlockMechanism.html b/org/neuroml/model/class-use/BlockMechanism.html new file mode 100644 index 00000000..e6de8466 --- /dev/null +++ b/org/neuroml/model/class-use/BlockMechanism.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.BlockMechanism (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BlockMechanism

+
+
Packages that use BlockMechanism
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BlockTypes.html b/org/neuroml/model/class-use/BlockTypes.html new file mode 100644 index 00000000..1478647f --- /dev/null +++ b/org/neuroml/model/class-use/BlockTypes.html @@ -0,0 +1,123 @@ + + + + +Uses of Enum org.neuroml.model.BlockTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Enum
org.neuroml.model.BlockTypes

+
+
Packages that use BlockTypes
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/BlockingPlasticSynapse.html b/org/neuroml/model/class-use/BlockingPlasticSynapse.html new file mode 100644 index 00000000..ffa3ad84 --- /dev/null +++ b/org/neuroml/model/class-use/BlockingPlasticSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.BlockingPlasticSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.BlockingPlasticSynapse

+
+
Packages that use BlockingPlasticSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Case.html b/org/neuroml/model/class-use/Case.html new file mode 100644 index 00000000..46a867d2 --- /dev/null +++ b/org/neuroml/model/class-use/Case.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Case (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Case

+
+
Packages that use Case
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.Cell

+
+
Packages that use Cell
+
+
Package
+
Description
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org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
+
+ +
+
+
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+

Copyright NeuroML Contributors 2022

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+
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Uses of Class
org.neuroml.model.Cell2CaPools

+
+
Packages that use Cell2CaPools
+
+
Package
+
Description
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org.neuroml.model
+
 
+
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+

Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.CellSet

+
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Packages that use CellSet
+
+
Package
+
Description
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org.neuroml.model
+
 
+
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+
+
+

Copyright NeuroML Contributors 2022

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+
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Uses of Class
org.neuroml.model.ChannelDensity

+
+
Packages that use ChannelDensity
+
+
Package
+
Description
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org.neuroml.model
+
 
+
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+
+
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+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.ChannelDensityGHK

+
+
Packages that use ChannelDensityGHK
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
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+
+
+
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Copyright NeuroML Contributors 2022

+
+
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Uses of Class
org.neuroml.model.ChannelDensityGHK2

+
+
Packages that use ChannelDensityGHK2
+
+
Package
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Description
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org.neuroml.model
+
 
+
+
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Copyright NeuroML Contributors 2022

+
+
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Uses of Class
org.neuroml.model.ChannelDensityNernst

+
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Packages that use ChannelDensityNernst
+
+
Package
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Description
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org.neuroml.model
+
 
+
+
+ +
+
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Copyright NeuroML Contributors 2022

+
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Uses of Class
org.neuroml.model.ChannelDensityNernstCa2

+
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Packages that use ChannelDensityNernstCa2
+
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Package
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Description
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org.neuroml.model
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+
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.ChannelDensityNonUniform

+
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Packages that use ChannelDensityNonUniform
+
+
Package
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Description
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org.neuroml.model
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+
+
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Copyright NeuroML Contributors 2022

+
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Uses of Class
org.neuroml.model.ChannelDensityNonUniformGHK

+
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Packages that use ChannelDensityNonUniformGHK
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+
Package
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Description
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org.neuroml.model
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+
+
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Copyright NeuroML Contributors 2022

+
+
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Uses of Class
org.neuroml.model.ChannelDensityNonUniformNernst

+
+
Packages that use ChannelDensityNonUniformNernst
+
+
Package
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Description
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org.neuroml.model
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+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.ChannelDensityVShift

+
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Packages that use ChannelDensityVShift
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.ChannelPopulation

+
+
Packages that use ChannelPopulation
+
+
Package
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Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Enum
org.neuroml.model.ChannelTypes

+
+
Packages that use ChannelTypes
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.ClosedState

+
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Packages that use ClosedState
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
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+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.ComponentType

+
+
Packages that use ComponentType
+
+
Package
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Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.CompoundInput

+
+
Packages that use CompoundInput
+
+
Package
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Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.CompoundInputDL

+
+
Packages that use CompoundInputDL
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ConcentrationModelD.html b/org/neuroml/model/class-use/ConcentrationModelD.html new file mode 100644 index 00000000..dbe9eada --- /dev/null +++ b/org/neuroml/model/class-use/ConcentrationModelD.html @@ -0,0 +1,89 @@ + + + + +Uses of Class org.neuroml.model.ConcentrationModelD (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
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Uses of Class
org.neuroml.model.ConcentrationModelD

+
+
Packages that use ConcentrationModelD
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ConditionalDerivedVariable.html b/org/neuroml/model/class-use/ConditionalDerivedVariable.html new file mode 100644 index 00000000..5d4908c1 --- /dev/null +++ b/org/neuroml/model/class-use/ConditionalDerivedVariable.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ConditionalDerivedVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
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Uses of Class
org.neuroml.model.ConditionalDerivedVariable

+
+
Packages that use ConditionalDerivedVariable
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Connection.html b/org/neuroml/model/class-use/Connection.html new file mode 100644 index 00000000..4d6e7ff0 --- /dev/null +++ b/org/neuroml/model/class-use/Connection.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Connection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
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Uses of Class
org.neuroml.model.Connection

+
+
Packages that use Connection
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.ConnectionWD

+
+
Packages that use ConnectionWD
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.Constant

+
+
Packages that use Constant
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ContinuousConnection.html b/org/neuroml/model/class-use/ContinuousConnection.html new file mode 100644 index 00000000..07304123 --- /dev/null +++ b/org/neuroml/model/class-use/ContinuousConnection.html @@ -0,0 +1,125 @@ + + + + +Uses of Class org.neuroml.model.ContinuousConnection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
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Uses of Class
org.neuroml.model.ContinuousConnection

+
+
Packages that use ContinuousConnection
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ContinuousConnectionInstance.html b/org/neuroml/model/class-use/ContinuousConnectionInstance.html new file mode 100644 index 00000000..7aa8387a --- /dev/null +++ b/org/neuroml/model/class-use/ContinuousConnectionInstance.html @@ -0,0 +1,120 @@ + + + + +Uses of Class org.neuroml.model.ContinuousConnectionInstance (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
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Uses of Class
org.neuroml.model.ContinuousConnectionInstance

+
+
Packages that use ContinuousConnectionInstance
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ContinuousConnectionInstanceW.html b/org/neuroml/model/class-use/ContinuousConnectionInstanceW.html new file mode 100644 index 00000000..81766eb7 --- /dev/null +++ b/org/neuroml/model/class-use/ContinuousConnectionInstanceW.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ContinuousConnectionInstanceW (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ContinuousConnectionInstanceW

+
+
Packages that use ContinuousConnectionInstanceW
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ContinuousProjection.html b/org/neuroml/model/class-use/ContinuousProjection.html new file mode 100644 index 00000000..d9021c36 --- /dev/null +++ b/org/neuroml/model/class-use/ContinuousProjection.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ContinuousProjection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ContinuousProjection

+
+
Packages that use ContinuousProjection
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/DecayingPoolConcentrationModel.html b/org/neuroml/model/class-use/DecayingPoolConcentrationModel.html new file mode 100644 index 00000000..b3057ef0 --- /dev/null +++ b/org/neuroml/model/class-use/DecayingPoolConcentrationModel.html @@ -0,0 +1,120 @@ + + + + +Uses of Class org.neuroml.model.DecayingPoolConcentrationModel (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
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Uses of Class
org.neuroml.model.DecayingPoolConcentrationModel

+
+
Packages that use DecayingPoolConcentrationModel
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/DerivedParameter.html b/org/neuroml/model/class-use/DerivedParameter.html new file mode 100644 index 00000000..12f52724 --- /dev/null +++ b/org/neuroml/model/class-use/DerivedParameter.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.DerivedParameter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
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Uses of Class
org.neuroml.model.DerivedParameter

+
+
Packages that use DerivedParameter
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/DerivedVariable.html b/org/neuroml/model/class-use/DerivedVariable.html new file mode 100644 index 00000000..ba6ff7a5 --- /dev/null +++ b/org/neuroml/model/class-use/DerivedVariable.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.DerivedVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
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Uses of Class
org.neuroml.model.DerivedVariable

+
+
Packages that use DerivedVariable
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/DistalDetails.html b/org/neuroml/model/class-use/DistalDetails.html new file mode 100644 index 00000000..884b2e94 --- /dev/null +++ b/org/neuroml/model/class-use/DistalDetails.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.DistalDetails (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.DistalDetails

+
+
Packages that use DistalDetails
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/DoubleSynapse.html b/org/neuroml/model/class-use/DoubleSynapse.html new file mode 100644 index 00000000..a62b8c6f --- /dev/null +++ b/org/neuroml/model/class-use/DoubleSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.DoubleSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.DoubleSynapse

+
+
Packages that use DoubleSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Dynamics.html b/org/neuroml/model/class-use/Dynamics.html new file mode 100644 index 00000000..dbce6357 --- /dev/null +++ b/org/neuroml/model/class-use/Dynamics.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Dynamics (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Dynamics

+
+
Packages that use Dynamics
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/EIFCondAlphaIsfaIsta.html b/org/neuroml/model/class-use/EIFCondAlphaIsfaIsta.html new file mode 100644 index 00000000..aac55cc7 --- /dev/null +++ b/org/neuroml/model/class-use/EIFCondAlphaIsfaIsta.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.EIFCondAlphaIsfaIsta (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.EIFCondAlphaIsfaIsta

+
+
Packages that use EIFCondAlphaIsfaIsta
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/EIFCondExpIsfaIsta.html b/org/neuroml/model/class-use/EIFCondExpIsfaIsta.html new file mode 100644 index 00000000..10cbcf01 --- /dev/null +++ b/org/neuroml/model/class-use/EIFCondExpIsfaIsta.html @@ -0,0 +1,155 @@ + + + + +Uses of Class org.neuroml.model.EIFCondExpIsfaIsta (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.EIFCondExpIsfaIsta

+
+
Packages that use EIFCondExpIsfaIsta
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of EIFCondExpIsfaIsta in org.neuroml.model

    +
    Subclasses of EIFCondExpIsfaIsta in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    +
    Fields in org.neuroml.model with type parameters of type EIFCondExpIsfaIsta
    +
    +
    Modifier and Type
    +
    Field
    +
    Description
    +
    protected List<EIFCondExpIsfaIsta>
    +
    NeuroMLDocument.eifCondExpIsfaIsta
    +
     
    +
    +
    Methods in org.neuroml.model that return EIFCondExpIsfaIsta
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    EIFCondExpIsfaIsta
    +
    ObjectFactory.createEIFCondExpIsfaIsta()
    +
    +
    Create an instance of EIFCondExpIsfaIsta
    +
    +
    +
    Methods in org.neuroml.model that return types with arguments of type EIFCondExpIsfaIsta
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    List<EIFCondExpIsfaIsta>
    +
    NeuroMLDocument.getEIFCondExpIsfaIsta()
    +
    +
    Gets the value of the eifCondExpIsfaIsta property.
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ElectricalConnection.html b/org/neuroml/model/class-use/ElectricalConnection.html new file mode 100644 index 00000000..d21edfe5 --- /dev/null +++ b/org/neuroml/model/class-use/ElectricalConnection.html @@ -0,0 +1,125 @@ + + + + +Uses of Class org.neuroml.model.ElectricalConnection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ElectricalConnection

+
+
Packages that use ElectricalConnection
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ElectricalConnectionInstance.html b/org/neuroml/model/class-use/ElectricalConnectionInstance.html new file mode 100644 index 00000000..1a9e6bac --- /dev/null +++ b/org/neuroml/model/class-use/ElectricalConnectionInstance.html @@ -0,0 +1,120 @@ + + + + +Uses of Class org.neuroml.model.ElectricalConnectionInstance (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ElectricalConnectionInstance

+
+
Packages that use ElectricalConnectionInstance
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ElectricalConnectionInstanceW.html b/org/neuroml/model/class-use/ElectricalConnectionInstanceW.html new file mode 100644 index 00000000..6350c5fd --- /dev/null +++ b/org/neuroml/model/class-use/ElectricalConnectionInstanceW.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ElectricalConnectionInstanceW (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ElectricalConnectionInstanceW

+
+
Packages that use ElectricalConnectionInstanceW
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ElectricalProjection.html b/org/neuroml/model/class-use/ElectricalProjection.html new file mode 100644 index 00000000..16d9d9c0 --- /dev/null +++ b/org/neuroml/model/class-use/ElectricalProjection.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ElectricalProjection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ElectricalProjection

+
+
Packages that use ElectricalProjection
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/EventOut.html b/org/neuroml/model/class-use/EventOut.html new file mode 100644 index 00000000..110a3aea --- /dev/null +++ b/org/neuroml/model/class-use/EventOut.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.EventOut (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.EventOut

+
+
Packages that use EventOut
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ExpCondSynapse.html b/org/neuroml/model/class-use/ExpCondSynapse.html new file mode 100644 index 00000000..98245acb --- /dev/null +++ b/org/neuroml/model/class-use/ExpCondSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ExpCondSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ExpCondSynapse

+
+
Packages that use ExpCondSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ExpCurrSynapse.html b/org/neuroml/model/class-use/ExpCurrSynapse.html new file mode 100644 index 00000000..d0dce9e1 --- /dev/null +++ b/org/neuroml/model/class-use/ExpCurrSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ExpCurrSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ExpCurrSynapse

+
+
Packages that use ExpCurrSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ExpOneSynapse.html b/org/neuroml/model/class-use/ExpOneSynapse.html new file mode 100644 index 00000000..9a6ba376 --- /dev/null +++ b/org/neuroml/model/class-use/ExpOneSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ExpOneSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ExpOneSynapse

+
+
Packages that use ExpOneSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ExpThreeSynapse.html b/org/neuroml/model/class-use/ExpThreeSynapse.html new file mode 100644 index 00000000..0e64969f --- /dev/null +++ b/org/neuroml/model/class-use/ExpThreeSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ExpThreeSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ExpThreeSynapse

+
+
Packages that use ExpThreeSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ExpTwoSynapse.html b/org/neuroml/model/class-use/ExpTwoSynapse.html new file mode 100644 index 00000000..174d8e48 --- /dev/null +++ b/org/neuroml/model/class-use/ExpTwoSynapse.html @@ -0,0 +1,120 @@ + + + + +Uses of Class org.neuroml.model.ExpTwoSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ExpTwoSynapse

+
+
Packages that use ExpTwoSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ExplicitInput.html b/org/neuroml/model/class-use/ExplicitInput.html new file mode 100644 index 00000000..540e6a35 --- /dev/null +++ b/org/neuroml/model/class-use/ExplicitInput.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ExplicitInput (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ExplicitInput

+
+
Packages that use ExplicitInput
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Exposure.html b/org/neuroml/model/class-use/Exposure.html new file mode 100644 index 00000000..24f2b15c --- /dev/null +++ b/org/neuroml/model/class-use/Exposure.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Exposure (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Exposure

+
+
Packages that use Exposure
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ExtracellularProperties.html b/org/neuroml/model/class-use/ExtracellularProperties.html new file mode 100644 index 00000000..1fbf2a35 --- /dev/null +++ b/org/neuroml/model/class-use/ExtracellularProperties.html @@ -0,0 +1,147 @@ + + + + +Uses of Class org.neuroml.model.ExtracellularProperties (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ExtracellularProperties

+
+
Packages that use ExtracellularProperties
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ExtracellularPropertiesLocal.html b/org/neuroml/model/class-use/ExtracellularPropertiesLocal.html new file mode 100644 index 00000000..d7d70d6f --- /dev/null +++ b/org/neuroml/model/class-use/ExtracellularPropertiesLocal.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.ExtracellularPropertiesLocal (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ExtracellularPropertiesLocal

+
+
Packages that use ExtracellularPropertiesLocal
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/FitzHughNagumo1969Cell.html b/org/neuroml/model/class-use/FitzHughNagumo1969Cell.html new file mode 100644 index 00000000..479abb3d --- /dev/null +++ b/org/neuroml/model/class-use/FitzHughNagumo1969Cell.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.FitzHughNagumo1969Cell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.FitzHughNagumo1969Cell

+
+
Packages that use FitzHughNagumo1969Cell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/FitzHughNagumoCell.html b/org/neuroml/model/class-use/FitzHughNagumoCell.html new file mode 100644 index 00000000..bfa31457 --- /dev/null +++ b/org/neuroml/model/class-use/FitzHughNagumoCell.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.FitzHughNagumoCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.FitzHughNagumoCell

+
+
Packages that use FitzHughNagumoCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/FixedFactorConcentrationModel.html b/org/neuroml/model/class-use/FixedFactorConcentrationModel.html new file mode 100644 index 00000000..e9c552ce --- /dev/null +++ b/org/neuroml/model/class-use/FixedFactorConcentrationModel.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.FixedFactorConcentrationModel (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.FixedFactorConcentrationModel

+
+
Packages that use FixedFactorConcentrationModel
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ForwardTransition.html b/org/neuroml/model/class-use/ForwardTransition.html new file mode 100644 index 00000000..32c7a200 --- /dev/null +++ b/org/neuroml/model/class-use/ForwardTransition.html @@ -0,0 +1,89 @@ + + + + +Uses of Class org.neuroml.model.ForwardTransition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ForwardTransition

+
+
Packages that use ForwardTransition
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GapJunction.html b/org/neuroml/model/class-use/GapJunction.html new file mode 100644 index 00000000..c43b7060 --- /dev/null +++ b/org/neuroml/model/class-use/GapJunction.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GapJunction (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GapJunction

+
+
Packages that use GapJunction
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateFractional.html b/org/neuroml/model/class-use/GateFractional.html new file mode 100644 index 00000000..40583aec --- /dev/null +++ b/org/neuroml/model/class-use/GateFractional.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateFractional (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateFractional

+
+
Packages that use GateFractional
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateFractionalSubgate.html b/org/neuroml/model/class-use/GateFractionalSubgate.html new file mode 100644 index 00000000..3e9040aa --- /dev/null +++ b/org/neuroml/model/class-use/GateFractionalSubgate.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.GateFractionalSubgate (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateFractionalSubgate

+
+
Packages that use GateFractionalSubgate
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateHHInstantaneous.html b/org/neuroml/model/class-use/GateHHInstantaneous.html new file mode 100644 index 00000000..0a5d4a3f --- /dev/null +++ b/org/neuroml/model/class-use/GateHHInstantaneous.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateHHInstantaneous (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateHHInstantaneous

+
+
Packages that use GateHHInstantaneous
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateHHRates.html b/org/neuroml/model/class-use/GateHHRates.html new file mode 100644 index 00000000..458288fa --- /dev/null +++ b/org/neuroml/model/class-use/GateHHRates.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateHHRates (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateHHRates

+
+
Packages that use GateHHRates
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateHHRatesInf.html b/org/neuroml/model/class-use/GateHHRatesInf.html new file mode 100644 index 00000000..3b55a0b2 --- /dev/null +++ b/org/neuroml/model/class-use/GateHHRatesInf.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateHHRatesInf (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateHHRatesInf

+
+
Packages that use GateHHRatesInf
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateHHRatesTau.html b/org/neuroml/model/class-use/GateHHRatesTau.html new file mode 100644 index 00000000..d3e535c5 --- /dev/null +++ b/org/neuroml/model/class-use/GateHHRatesTau.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateHHRatesTau (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateHHRatesTau

+
+
Packages that use GateHHRatesTau
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateHHRatesTauInf.html b/org/neuroml/model/class-use/GateHHRatesTauInf.html new file mode 100644 index 00000000..ba0e54e6 --- /dev/null +++ b/org/neuroml/model/class-use/GateHHRatesTauInf.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateHHRatesTauInf (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateHHRatesTauInf

+
+
Packages that use GateHHRatesTauInf
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateHHTauInf.html b/org/neuroml/model/class-use/GateHHTauInf.html new file mode 100644 index 00000000..800eeb9c --- /dev/null +++ b/org/neuroml/model/class-use/GateHHTauInf.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateHHTauInf (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateHHTauInf

+
+
Packages that use GateHHTauInf
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateHHUndetermined.html b/org/neuroml/model/class-use/GateHHUndetermined.html new file mode 100644 index 00000000..763d131e --- /dev/null +++ b/org/neuroml/model/class-use/GateHHUndetermined.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateHHUndetermined (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateHHUndetermined

+
+
Packages that use GateHHUndetermined
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateKS.html b/org/neuroml/model/class-use/GateKS.html new file mode 100644 index 00000000..be035afc --- /dev/null +++ b/org/neuroml/model/class-use/GateKS.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GateKS (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GateKS

+
+
Packages that use GateKS
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GateTypes.html b/org/neuroml/model/class-use/GateTypes.html new file mode 100644 index 00000000..2d7c0073 --- /dev/null +++ b/org/neuroml/model/class-use/GateTypes.html @@ -0,0 +1,123 @@ + + + + +Uses of Enum org.neuroml.model.GateTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Enum
org.neuroml.model.GateTypes

+
+
Packages that use GateTypes
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GradedSynapse.html b/org/neuroml/model/class-use/GradedSynapse.html new file mode 100644 index 00000000..58ad1da5 --- /dev/null +++ b/org/neuroml/model/class-use/GradedSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.GradedSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GradedSynapse

+
+
Packages that use GradedSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/GridLayout.html b/org/neuroml/model/class-use/GridLayout.html new file mode 100644 index 00000000..c3c734b1 --- /dev/null +++ b/org/neuroml/model/class-use/GridLayout.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.GridLayout (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.GridLayout

+
+
Packages that use GridLayout
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/HHCondExp.html b/org/neuroml/model/class-use/HHCondExp.html new file mode 100644 index 00000000..5cb99596 --- /dev/null +++ b/org/neuroml/model/class-use/HHCondExp.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.HHCondExp (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.HHCondExp

+
+
Packages that use HHCondExp
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/HHRate.html b/org/neuroml/model/class-use/HHRate.html new file mode 100644 index 00000000..3ef45b64 --- /dev/null +++ b/org/neuroml/model/class-use/HHRate.html @@ -0,0 +1,231 @@ + + + + +Uses of Class org.neuroml.model.HHRate (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.HHRate

+
+
Packages that use HHRate
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/HHTime.html b/org/neuroml/model/class-use/HHTime.html new file mode 100644 index 00000000..c5f9b968 --- /dev/null +++ b/org/neuroml/model/class-use/HHTime.html @@ -0,0 +1,179 @@ + + + + +Uses of Class org.neuroml.model.HHTime (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.HHTime

+
+
Packages that use HHTime
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/HHVariable.html b/org/neuroml/model/class-use/HHVariable.html new file mode 100644 index 00000000..371383c5 --- /dev/null +++ b/org/neuroml/model/class-use/HHVariable.html @@ -0,0 +1,192 @@ + + + + +Uses of Class org.neuroml.model.HHVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.HHVariable

+
+
Packages that use HHVariable
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/HindmarshRose1984Cell.html b/org/neuroml/model/class-use/HindmarshRose1984Cell.html new file mode 100644 index 00000000..025c0627 --- /dev/null +++ b/org/neuroml/model/class-use/HindmarshRose1984Cell.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.HindmarshRose1984Cell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.HindmarshRose1984Cell

+
+
Packages that use HindmarshRose1984Cell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/IFCondAlpha.html b/org/neuroml/model/class-use/IFCondAlpha.html new file mode 100644 index 00000000..a7ef4fca --- /dev/null +++ b/org/neuroml/model/class-use/IFCondAlpha.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.IFCondAlpha (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.IFCondAlpha

+
+
Packages that use IFCondAlpha
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/IFCondExp.html b/org/neuroml/model/class-use/IFCondExp.html new file mode 100644 index 00000000..b216073c --- /dev/null +++ b/org/neuroml/model/class-use/IFCondExp.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.IFCondExp (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.IFCondExp

+
+
Packages that use IFCondExp
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/IFCurrAlpha.html b/org/neuroml/model/class-use/IFCurrAlpha.html new file mode 100644 index 00000000..3bc40ece --- /dev/null +++ b/org/neuroml/model/class-use/IFCurrAlpha.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.IFCurrAlpha (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.IFCurrAlpha

+
+
Packages that use IFCurrAlpha
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/IFCurrExp.html b/org/neuroml/model/class-use/IFCurrExp.html new file mode 100644 index 00000000..7e5605ff --- /dev/null +++ b/org/neuroml/model/class-use/IFCurrExp.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.IFCurrExp (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.IFCurrExp

+
+
Packages that use IFCurrExp
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/IafCell.html b/org/neuroml/model/class-use/IafCell.html new file mode 100644 index 00000000..f4b55ddd --- /dev/null +++ b/org/neuroml/model/class-use/IafCell.html @@ -0,0 +1,133 @@ + + + + +Uses of Class org.neuroml.model.IafCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.IafCell

+
+
Packages that use IafCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of IafCell in org.neuroml.model

    +
    Subclasses of IafCell in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    IafRefCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    +
    Fields in org.neuroml.model with type parameters of type IafCell
    +
    +
    Modifier and Type
    +
    Field
    +
    Description
    +
    protected List<IafCell>
    +
    NeuroMLDocument.iafCell
    +
     
    +
    +
    Methods in org.neuroml.model that return IafCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    IafCell
    +
    ObjectFactory.createIafCell()
    +
    +
    Create an instance of IafCell
    +
    +
    +
    Methods in org.neuroml.model that return types with arguments of type IafCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    List<IafCell>
    +
    NeuroMLDocument.getIafCell()
    +
    +
    Gets the value of the iafCell property.
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/IafRefCell.html b/org/neuroml/model/class-use/IafRefCell.html new file mode 100644 index 00000000..dde7e35b --- /dev/null +++ b/org/neuroml/model/class-use/IafRefCell.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.IafRefCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.IafRefCell

+
+
Packages that use IafRefCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/IafTauCell.html b/org/neuroml/model/class-use/IafTauCell.html new file mode 100644 index 00000000..b4d5c118 --- /dev/null +++ b/org/neuroml/model/class-use/IafTauCell.html @@ -0,0 +1,131 @@ + + + + +Uses of Class org.neuroml.model.IafTauCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.IafTauCell

+
+
Packages that use IafTauCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+
    +
  • +
    +

    Uses of IafTauCell in org.neuroml.model

    +
    Subclasses of IafTauCell in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    IafTauRefCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    +
    Fields in org.neuroml.model with type parameters of type IafTauCell
    +
    +
    Modifier and Type
    +
    Field
    +
    Description
    +
    protected List<IafTauCell>
    +
    NeuroMLDocument.iafTauCell
    +
     
    +
    +
    Methods in org.neuroml.model that return IafTauCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    IafTauCell
    +
    ObjectFactory.createIafTauCell()
    +
    +
    Create an instance of IafTauCell
    +
    +
    +
    Methods in org.neuroml.model that return types with arguments of type IafTauCell
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    List<IafTauCell>
    +
    NeuroMLDocument.getIafTauCell()
    +
    +
    Gets the value of the iafTauCell property.
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/IafTauRefCell.html b/org/neuroml/model/class-use/IafTauRefCell.html new file mode 100644 index 00000000..e79e6819 --- /dev/null +++ b/org/neuroml/model/class-use/IafTauRefCell.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.IafTauRefCell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.IafTauRefCell

+
+
Packages that use IafTauRefCell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Include.html b/org/neuroml/model/class-use/Include.html new file mode 100644 index 00000000..554a387f --- /dev/null +++ b/org/neuroml/model/class-use/Include.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Include (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Include

+
+
Packages that use Include
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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org.neuroml.model.IncludeType

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Packages that use IncludeType
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Package
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.InhomogeneousParameter

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Packages that use InhomogeneousParameter
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.InhomogeneousValue

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Packages that use InhomogeneousValue
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.InitMembPotential

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Packages that use InitMembPotential
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Package
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.Input

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Packages that use Input
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Package
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org.neuroml.model
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org.neuroml.model.util
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Copyright NeuroML Contributors 2022

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org.neuroml.model.InputList

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Packages that use InputList
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Package
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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org.neuroml.model.InputW

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Packages that use InputW
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.Instance

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Packages that use Instance
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Package
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.InstanceRequirement

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Packages that use InstanceRequirement
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.IntracellularProperties

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Packages that use IntracellularProperties
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.IntracellularProperties2CaPools

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Packages that use IntracellularProperties2CaPools
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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org.neuroml.model.IonChannel

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Packages that use IonChannel
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.IonChannelHH

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Packages that use IonChannelHH
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

+
+
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Uses of Class
org.neuroml.model.IonChannelKS

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Packages that use IonChannelKS
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.IonChannelScalable

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Packages that use IonChannelScalable
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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Uses of Class
org.neuroml.model.IonChannelVShift

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Packages that use IonChannelVShift
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

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+
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Uses of Class
org.neuroml.model.Izhikevich2007Cell

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Packages that use Izhikevich2007Cell
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Package
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Description
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org.neuroml.model
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Copyright NeuroML Contributors 2022

+
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Uses of Class
org.neuroml.model.IzhikevichCell

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Packages that use IzhikevichCell
+
+
Package
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Description
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org.neuroml.model
+
 
+
+
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Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.LEMSProperty

+
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Packages that use LEMSProperty
+
+
Package
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Description
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org.neuroml.model
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+
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+
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Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.Layout

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Packages that use Layout
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+
Package
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Description
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org.neuroml.model
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+
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Copyright NeuroML Contributors 2022

+
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Uses of Class
org.neuroml.model.LinearGradedSynapse

+
+
Packages that use LinearGradedSynapse
+
+
Package
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Description
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org.neuroml.model
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+
+
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+
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Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.Location

+
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Packages that use Location
+
+
Package
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Description
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org.neuroml.model
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+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.Member

+
+
Packages that use Member
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+
Package
+
Description
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org.neuroml.model
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+
+
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+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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+
+
+

Uses of Class
org.neuroml.model.MembraneProperties

+
+
Packages that use MembraneProperties
+
+
Package
+
Description
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org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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+ +
+
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Uses of Class
org.neuroml.model.MembraneProperties2CaPools

+
+
Packages that use MembraneProperties2CaPools
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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+
+

Uses of Enum
org.neuroml.model.Metric

+
+
Packages that use Metric
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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+
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Uses of Class
org.neuroml.model.Morphology

+
+
Packages that use Morphology
+
+
Package
+
Description
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org.neuroml.model
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+
org.neuroml.model.util
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.NamedDimensionalType

+
+
Packages that use NamedDimensionalType
+
+
Package
+
Description
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org.neuroml.model
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+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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Uses of Class
org.neuroml.model.NamedDimensionalVariable

+
+
Packages that use NamedDimensionalVariable
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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+ +
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+
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Uses of Class
org.neuroml.model.Network

+
+
Packages that use Network
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/NetworkTypes.html b/org/neuroml/model/class-use/NetworkTypes.html new file mode 100644 index 00000000..0b39fa85 --- /dev/null +++ b/org/neuroml/model/class-use/NetworkTypes.html @@ -0,0 +1,123 @@ + + + + +Uses of Enum org.neuroml.model.NetworkTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Enum
org.neuroml.model.NetworkTypes

+
+
Packages that use NetworkTypes
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/NeuroMLDocument.html b/org/neuroml/model/class-use/NeuroMLDocument.html new file mode 100644 index 00000000..60038a24 --- /dev/null +++ b/org/neuroml/model/class-use/NeuroMLDocument.html @@ -0,0 +1,245 @@ + + + + +Uses of Class org.neuroml.model.NeuroMLDocument (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.NeuroMLDocument

+
+
Packages that use NeuroMLDocument
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ObjectFactory.html b/org/neuroml/model/class-use/ObjectFactory.html new file mode 100644 index 00000000..27a19354 --- /dev/null +++ b/org/neuroml/model/class-use/ObjectFactory.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.ObjectFactory (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ObjectFactory

+
+No usage of org.neuroml.model.ObjectFactory
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/OnCondition.html b/org/neuroml/model/class-use/OnCondition.html new file mode 100644 index 00000000..70ce0ada --- /dev/null +++ b/org/neuroml/model/class-use/OnCondition.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.OnCondition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.OnCondition

+
+
Packages that use OnCondition
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/OnEntry.html b/org/neuroml/model/class-use/OnEntry.html new file mode 100644 index 00000000..be7e4523 --- /dev/null +++ b/org/neuroml/model/class-use/OnEntry.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.OnEntry (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.OnEntry

+
+
Packages that use OnEntry
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/OnEvent.html b/org/neuroml/model/class-use/OnEvent.html new file mode 100644 index 00000000..422190b6 --- /dev/null +++ b/org/neuroml/model/class-use/OnEvent.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.OnEvent (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.OnEvent

+
+
Packages that use OnEvent
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/OnStart.html b/org/neuroml/model/class-use/OnStart.html new file mode 100644 index 00000000..eee0e65c --- /dev/null +++ b/org/neuroml/model/class-use/OnStart.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.OnStart (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.OnStart

+
+
Packages that use OnStart
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/OpenState.html b/org/neuroml/model/class-use/OpenState.html new file mode 100644 index 00000000..bb8635cc --- /dev/null +++ b/org/neuroml/model/class-use/OpenState.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.OpenState (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.OpenState

+
+
Packages that use OpenState
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Parameter.html b/org/neuroml/model/class-use/Parameter.html new file mode 100644 index 00000000..ed820066 --- /dev/null +++ b/org/neuroml/model/class-use/Parameter.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Parameter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Parameter

+
+
Packages that use Parameter
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Path.html b/org/neuroml/model/class-use/Path.html new file mode 100644 index 00000000..7b29a02c --- /dev/null +++ b/org/neuroml/model/class-use/Path.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Path (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Path

+
+
Packages that use Path
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/PinskyRinzelCA3Cell.html b/org/neuroml/model/class-use/PinskyRinzelCA3Cell.html new file mode 100644 index 00000000..11a5929e --- /dev/null +++ b/org/neuroml/model/class-use/PinskyRinzelCA3Cell.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.PinskyRinzelCA3Cell (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.PinskyRinzelCA3Cell

+
+
Packages that use PinskyRinzelCA3Cell
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/PlasticityMechanism.html b/org/neuroml/model/class-use/PlasticityMechanism.html new file mode 100644 index 00000000..b670cf35 --- /dev/null +++ b/org/neuroml/model/class-use/PlasticityMechanism.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.PlasticityMechanism (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.PlasticityMechanism

+
+
Packages that use PlasticityMechanism
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/PlasticityTypes.html b/org/neuroml/model/class-use/PlasticityTypes.html new file mode 100644 index 00000000..74343b0b --- /dev/null +++ b/org/neuroml/model/class-use/PlasticityTypes.html @@ -0,0 +1,123 @@ + + + + +Uses of Enum org.neuroml.model.PlasticityTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Enum
org.neuroml.model.PlasticityTypes

+
+
Packages that use PlasticityTypes
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Point3DWithDiam.html b/org/neuroml/model/class-use/Point3DWithDiam.html new file mode 100644 index 00000000..197ac876 --- /dev/null +++ b/org/neuroml/model/class-use/Point3DWithDiam.html @@ -0,0 +1,144 @@ + + + + +Uses of Class org.neuroml.model.Point3DWithDiam (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Point3DWithDiam

+
+
Packages that use Point3DWithDiam
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/PoissonFiringSynapse.html b/org/neuroml/model/class-use/PoissonFiringSynapse.html new file mode 100644 index 00000000..5e551fea --- /dev/null +++ b/org/neuroml/model/class-use/PoissonFiringSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.PoissonFiringSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.PoissonFiringSynapse

+
+
Packages that use PoissonFiringSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Population.html b/org/neuroml/model/class-use/Population.html new file mode 100644 index 00000000..ea66a891 --- /dev/null +++ b/org/neuroml/model/class-use/Population.html @@ -0,0 +1,127 @@ + + + + +Uses of Class org.neuroml.model.Population (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Population

+
+
Packages that use Population
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/PopulationTypes.html b/org/neuroml/model/class-use/PopulationTypes.html new file mode 100644 index 00000000..e27f7f1a --- /dev/null +++ b/org/neuroml/model/class-use/PopulationTypes.html @@ -0,0 +1,123 @@ + + + + +Uses of Enum org.neuroml.model.PopulationTypes (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Enum
org.neuroml.model.PopulationTypes

+
+
Packages that use PopulationTypes
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Projection.html b/org/neuroml/model/class-use/Projection.html new file mode 100644 index 00000000..01ab8efb --- /dev/null +++ b/org/neuroml/model/class-use/Projection.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Projection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Projection

+
+
Packages that use Projection
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Property.html b/org/neuroml/model/class-use/Property.html new file mode 100644 index 00000000..88656578 --- /dev/null +++ b/org/neuroml/model/class-use/Property.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.Property (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Property

+
+
Packages that use Property
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ProximalDetails.html b/org/neuroml/model/class-use/ProximalDetails.html new file mode 100644 index 00000000..b7a39864 --- /dev/null +++ b/org/neuroml/model/class-use/ProximalDetails.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.ProximalDetails (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ProximalDetails

+
+
Packages that use ProximalDetails
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/PulseGenerator.html b/org/neuroml/model/class-use/PulseGenerator.html new file mode 100644 index 00000000..f8395569 --- /dev/null +++ b/org/neuroml/model/class-use/PulseGenerator.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.PulseGenerator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.PulseGenerator

+
+
Packages that use PulseGenerator
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/PulseGeneratorDL.html b/org/neuroml/model/class-use/PulseGeneratorDL.html new file mode 100644 index 00000000..5cdaafc9 --- /dev/null +++ b/org/neuroml/model/class-use/PulseGeneratorDL.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.PulseGeneratorDL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.PulseGeneratorDL

+
+
Packages that use PulseGeneratorDL
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Q10ConductanceScaling.html b/org/neuroml/model/class-use/Q10ConductanceScaling.html new file mode 100644 index 00000000..19d8a0b5 --- /dev/null +++ b/org/neuroml/model/class-use/Q10ConductanceScaling.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Q10ConductanceScaling (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Q10ConductanceScaling

+
+
Packages that use Q10ConductanceScaling
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Q10Settings.html b/org/neuroml/model/class-use/Q10Settings.html new file mode 100644 index 00000000..4ba79272 --- /dev/null +++ b/org/neuroml/model/class-use/Q10Settings.html @@ -0,0 +1,218 @@ + + + + +Uses of Class org.neuroml.model.Q10Settings (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Q10Settings

+
+
Packages that use Q10Settings
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/RampGenerator.html b/org/neuroml/model/class-use/RampGenerator.html new file mode 100644 index 00000000..6a4a3f9c --- /dev/null +++ b/org/neuroml/model/class-use/RampGenerator.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.RampGenerator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.RampGenerator

+
+
Packages that use RampGenerator
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/RampGeneratorDL.html b/org/neuroml/model/class-use/RampGeneratorDL.html new file mode 100644 index 00000000..427ffbd5 --- /dev/null +++ b/org/neuroml/model/class-use/RampGeneratorDL.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.RampGeneratorDL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.RampGeneratorDL

+
+
Packages that use RampGeneratorDL
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/RandomLayout.html b/org/neuroml/model/class-use/RandomLayout.html new file mode 100644 index 00000000..18549094 --- /dev/null +++ b/org/neuroml/model/class-use/RandomLayout.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.RandomLayout (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.RandomLayout

+
+
Packages that use RandomLayout
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ReactionScheme.html b/org/neuroml/model/class-use/ReactionScheme.html new file mode 100644 index 00000000..32575572 --- /dev/null +++ b/org/neuroml/model/class-use/ReactionScheme.html @@ -0,0 +1,89 @@ + + + + +Uses of Class org.neuroml.model.ReactionScheme (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ReactionScheme

+
+
Packages that use ReactionScheme
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Regime.html b/org/neuroml/model/class-use/Regime.html new file mode 100644 index 00000000..8a39395b --- /dev/null +++ b/org/neuroml/model/class-use/Regime.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Regime (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Regime

+
+
Packages that use Regime
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Region.html b/org/neuroml/model/class-use/Region.html new file mode 100644 index 00000000..967a84c2 --- /dev/null +++ b/org/neuroml/model/class-use/Region.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Region (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Region

+
+
Packages that use Region
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Requirement.html b/org/neuroml/model/class-use/Requirement.html new file mode 100644 index 00000000..fd3c0dfb --- /dev/null +++ b/org/neuroml/model/class-use/Requirement.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Requirement (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Requirement

+
+
Packages that use Requirement
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Resistivity.html b/org/neuroml/model/class-use/Resistivity.html new file mode 100644 index 00000000..9bcc7582 --- /dev/null +++ b/org/neuroml/model/class-use/Resistivity.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Resistivity (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Resistivity

+
+
Packages that use Resistivity
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/ReverseTransition.html b/org/neuroml/model/class-use/ReverseTransition.html new file mode 100644 index 00000000..c5df13e8 --- /dev/null +++ b/org/neuroml/model/class-use/ReverseTransition.html @@ -0,0 +1,89 @@ + + + + +Uses of Class org.neuroml.model.ReverseTransition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.ReverseTransition

+
+
Packages that use ReverseTransition
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Segment.html b/org/neuroml/model/class-use/Segment.html new file mode 100644 index 00000000..f070c7c0 --- /dev/null +++ b/org/neuroml/model/class-use/Segment.html @@ -0,0 +1,144 @@ + + + + +Uses of Class org.neuroml.model.Segment (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Segment

+
+
Packages that use Segment
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SegmentEndPoint.html b/org/neuroml/model/class-use/SegmentEndPoint.html new file mode 100644 index 00000000..7863ce1a --- /dev/null +++ b/org/neuroml/model/class-use/SegmentEndPoint.html @@ -0,0 +1,153 @@ + + + + +Uses of Class org.neuroml.model.SegmentEndPoint (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SegmentEndPoint

+
+
Packages that use SegmentEndPoint
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SegmentGroup.html b/org/neuroml/model/class-use/SegmentGroup.html new file mode 100644 index 00000000..cf89d3b7 --- /dev/null +++ b/org/neuroml/model/class-use/SegmentGroup.html @@ -0,0 +1,171 @@ + + + + +Uses of Class org.neuroml.model.SegmentGroup (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SegmentGroup

+
+
Packages that use SegmentGroup
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SegmentParent.html b/org/neuroml/model/class-use/SegmentParent.html new file mode 100644 index 00000000..2e01eeb5 --- /dev/null +++ b/org/neuroml/model/class-use/SegmentParent.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.SegmentParent (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SegmentParent

+
+
Packages that use SegmentParent
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SilentSynapse.html b/org/neuroml/model/class-use/SilentSynapse.html new file mode 100644 index 00000000..1c7e9cdb --- /dev/null +++ b/org/neuroml/model/class-use/SilentSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SilentSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SilentSynapse

+
+
Packages that use SilentSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SineGenerator.html b/org/neuroml/model/class-use/SineGenerator.html new file mode 100644 index 00000000..44c4ec1b --- /dev/null +++ b/org/neuroml/model/class-use/SineGenerator.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.SineGenerator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SineGenerator

+
+
Packages that use SineGenerator
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SineGeneratorDL.html b/org/neuroml/model/class-use/SineGeneratorDL.html new file mode 100644 index 00000000..ef730775 --- /dev/null +++ b/org/neuroml/model/class-use/SineGeneratorDL.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.SineGeneratorDL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SineGeneratorDL

+
+
Packages that use SineGeneratorDL
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Space.html b/org/neuroml/model/class-use/Space.html new file mode 100644 index 00000000..3e647d05 --- /dev/null +++ b/org/neuroml/model/class-use/Space.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.Space (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Space

+
+
Packages that use Space
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpaceStructure.html b/org/neuroml/model/class-use/SpaceStructure.html new file mode 100644 index 00000000..e63f8709 --- /dev/null +++ b/org/neuroml/model/class-use/SpaceStructure.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.SpaceStructure (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpaceStructure

+
+
Packages that use SpaceStructure
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Species.html b/org/neuroml/model/class-use/Species.html new file mode 100644 index 00000000..3f7ca2e7 --- /dev/null +++ b/org/neuroml/model/class-use/Species.html @@ -0,0 +1,125 @@ + + + + +Uses of Class org.neuroml.model.Species (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Species

+
+
Packages that use Species
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpecificCapacitance.html b/org/neuroml/model/class-use/SpecificCapacitance.html new file mode 100644 index 00000000..e50b24ef --- /dev/null +++ b/org/neuroml/model/class-use/SpecificCapacitance.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SpecificCapacitance (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpecificCapacitance

+
+
Packages that use SpecificCapacitance
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Spike.html b/org/neuroml/model/class-use/Spike.html new file mode 100644 index 00000000..b168d593 --- /dev/null +++ b/org/neuroml/model/class-use/Spike.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.Spike (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Spike

+
+
Packages that use Spike
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpikeArray.html b/org/neuroml/model/class-use/SpikeArray.html new file mode 100644 index 00000000..f61dc5b3 --- /dev/null +++ b/org/neuroml/model/class-use/SpikeArray.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SpikeArray (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpikeArray

+
+
Packages that use SpikeArray
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpikeGenerator.html b/org/neuroml/model/class-use/SpikeGenerator.html new file mode 100644 index 00000000..a26a6bda --- /dev/null +++ b/org/neuroml/model/class-use/SpikeGenerator.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SpikeGenerator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpikeGenerator

+
+
Packages that use SpikeGenerator
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpikeGeneratorPoisson.html b/org/neuroml/model/class-use/SpikeGeneratorPoisson.html new file mode 100644 index 00000000..3850b477 --- /dev/null +++ b/org/neuroml/model/class-use/SpikeGeneratorPoisson.html @@ -0,0 +1,125 @@ + + + + +Uses of Class org.neuroml.model.SpikeGeneratorPoisson (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpikeGeneratorPoisson

+
+
Packages that use SpikeGeneratorPoisson
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpikeGeneratorRandom.html b/org/neuroml/model/class-use/SpikeGeneratorRandom.html new file mode 100644 index 00000000..435ff5f4 --- /dev/null +++ b/org/neuroml/model/class-use/SpikeGeneratorRandom.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SpikeGeneratorRandom (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpikeGeneratorRandom

+
+
Packages that use SpikeGeneratorRandom
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpikeGeneratorRefPoisson.html b/org/neuroml/model/class-use/SpikeGeneratorRefPoisson.html new file mode 100644 index 00000000..791a88a5 --- /dev/null +++ b/org/neuroml/model/class-use/SpikeGeneratorRefPoisson.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SpikeGeneratorRefPoisson (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpikeGeneratorRefPoisson

+
+
Packages that use SpikeGeneratorRefPoisson
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpikeSourcePoisson.html b/org/neuroml/model/class-use/SpikeSourcePoisson.html new file mode 100644 index 00000000..ffaf8c18 --- /dev/null +++ b/org/neuroml/model/class-use/SpikeSourcePoisson.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SpikeSourcePoisson (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpikeSourcePoisson

+
+
Packages that use SpikeSourcePoisson
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SpikeThresh.html b/org/neuroml/model/class-use/SpikeThresh.html new file mode 100644 index 00000000..296d9652 --- /dev/null +++ b/org/neuroml/model/class-use/SpikeThresh.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SpikeThresh (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SpikeThresh

+
+
Packages that use SpikeThresh
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Standalone.html b/org/neuroml/model/class-use/Standalone.html new file mode 100644 index 00000000..8473f947 --- /dev/null +++ b/org/neuroml/model/class-use/Standalone.html @@ -0,0 +1,873 @@ + + + + +Uses of Class org.neuroml.model.Standalone (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Standalone

+
+
Packages that use Standalone
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
org.neuroml.model.util
+
 
+
+
+
    +
  • +
    +

    Uses of Standalone in org.neuroml.model

    +
    Subclasses of Standalone in org.neuroml.model
    +
    +
    Modifier and Type
    +
    Class
    +
    Description
    +
    class 
    +
    AdExIaFCell
    +
    +
    Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
    +
    +
    class 
    +
    AlphaCondSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    class 
    +
    AlphaCurrentSynapse
    +
    +
    Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current
    +
    +
    class 
    +
    AlphaCurrSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    class 
    +
    AlphaSynapse
    +
    +
    Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    BaseCell
    +
    +
    Base type of any cell ( e.
    +
    +
    class 
    +
    BaseCellMembPotCap
    +
    +
    Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    BaseConductanceBasedSynapse
    +
    +
    Synapse model which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseConductanceBasedSynapseTwo
    +
    +
    Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
    +
    +
    class 
    +
    BaseCurrentBasedSynapse
    +
    +
    Synapse model which produces a synaptic current.
    +
    +
    class 
    +
    BasePyNNCell
    +
    +
    Base type of any PyNN standard cell model.
    +
    +
    class 
    +
    BasePyNNIaFCell
    +
    +
    Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    BasePyNNIaFCondCell
    +
    +
    Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    BasePynnSynapse
    +
    +
    Base type for all PyNN synapses.
    +
    +
    class 
    +
    BaseSynapse
    +
    +
    Base type for all synapses, i.
    +
    +
    class 
    +
    BaseVoltageDepSynapse
    +
    +
    Base type for synapses with a dependence on membrane potential
    +
    +
    class 
    +
    BiophysicalProperties
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
    +
    +
    class 
    +
    BiophysicalProperties2CaPools
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
    +
    +
    class 
    +
    BlockingPlasticSynapse
    +
    +
    Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
    +
    +
    class 
    +
    Cell
    +
    +
    Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
    +
    +
    class 
    +
    Cell2CaPools
    +
    +
    Variant of cell with two independent Ca2+ pools.
    +
    +
    class 
    +
    CompoundInput
    +
    +
    Generates a current which is the sum of all its child **basePointCurrent** element, e.
    +
    +
    class 
    +
    CompoundInputDL
    +
    +
    Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
    +
    +
    class 
    +
    ConcentrationModelD
    +
    +
    Java class for ConcentrationModel_D complex type.
    +
    +
    class 
    +
    DecayingPoolConcentrationModel
    +
    +
    Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param shellThickness: + :type shellThickness: length
    +
    +
    class 
    +
    DoubleSynapse
    +
    +
    Synapse consisting of two independent synaptic mechanisms ( e.
    +
    +
    class 
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    ExpCondSynapse
    +
    +
    Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none
    +
    +
    class 
    +
    ExpCurrSynapse
    +
    +
    Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none
    +
    +
    class 
    +
    ExpOneSynapse
    +
    +
    Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    ExpThreeSynapse
    +
    +
    Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
    +
    +
    class 
    +
    ExpTwoSynapse
    +
    +
    Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    class 
    +
    FitzHughNagumo1969Cell
    +
    +
    The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
    +
    +
    class 
    +
    FitzHughNagumoCell
    +
    +
    Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
    +
    +
    class 
    +
    FixedFactorConcentrationModel
    +
    +
    Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
    +
    +
    class 
    +
    GapJunction
    +
    +
    Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance
    +
    +
    class 
    +
    GradedSynapse
    +
    +
    Graded/analog synapse.
    +
    +
    class 
    +
    HHCondExp
    +
    +
    Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
    +
    +
    class 
    +
    HindmarshRose1984Cell
    +
    +
    The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
    +
    +
    class 
    +
    IafCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IafRefCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IafTauCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    class 
    +
    IafTauRefCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    class 
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IFCurrExp
    +
    +
    Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    class 
    +
    IonChannel
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    class 
    +
    IonChannelHH
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    class 
    +
    IonChannelKS
    +
    +
    A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param conductance: + :type conductance: conductance
    +
    +
    class 
    +
    IonChannelScalable
    +
    +
    Java class for IonChannelScalable complex type.
    +
    +
    class 
    +
    IonChannelVShift
    +
    +
    Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    class 
    +
    Izhikevich2007Cell
    +
    +
    Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    class 
    +
    IzhikevichCell
    +
    +
    Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage
    +
    +
    class 
    +
    LinearGradedSynapse
    +
    +
    Behaves just like a one way gap junction.
    +
    +
    class 
    +
    Morphology
    +
    +
    The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
    +
    +
    class 
    +
    Network
    +
    +
    Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
    +
    +
    class 
    +
    NeuroMLDocument
    +
    +
    Java class for NeuroMLDocument complex type.
    +
    +
    class 
    +
    PinskyRinzelCA3Cell
    +
    +
    Reduced CA3 cell model from Pinsky, P.
    +
    +
    class 
    +
    PoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
    +
    +
    class 
    +
    Population
    +
    +
    A population of components, with just one parameter for the **size,** i.
    +
    +
    class 
    +
    PulseGenerator
    +
    +
    Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    class 
    +
    PulseGeneratorDL
    +
    +
    Dimensionless equivalent of **pulseGenerator** .
    +
    +
    class 
    +
    RampGenerator
    +
    +
    Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    class 
    +
    RampGeneratorDL
    +
    +
    Dimensionless equivalent of **rampGenerator** .
    +
    +
    class 
    +
    SilentSynapse
    +
    +
    Dummy synapse which emits no current.
    +
    +
    class 
    +
    SineGenerator
    +
    +
    Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
    +
    +
    class 
    +
    SineGeneratorDL
    +
    +
    Dimensionless equivalent of **sineGenerator** .
    +
    +
    class 
    +
    SpikeArray
    +
    +
    Set of spike ComponentTypes, each emitting one spike at a certain time.
    +
    +
    class 
    +
    SpikeGenerator
    +
    +
    Simple generator of spikes at a regular interval set by **period** + \n + :param period: Time between spikes.
    +
    +
    class 
    +
    SpikeGeneratorPoisson
    +
    +
    Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    class 
    +
    SpikeGeneratorRandom
    +
    +
    Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** + \n + :param maxISI: Maximum interspike interval + :type maxISI: time + :param minISI: Minimum interspike interval + :type minISI: time
    +
    +
    class 
    +
    SpikeGeneratorRefPoisson
    +
    +
    Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** + \n + :param minimumISI: The minimum interspike interval + :type minimumISI: time + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    class 
    +
    SpikeSourcePoisson
    +
    +
    Spike source, generating spikes according to a Poisson process.
    +
    +
    class 
    +
    TimedSynapticInput
    +
    +
    Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
    +
    +
    class 
    +
    TransientPoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
    +
    +
    class 
    +
    VoltageClamp
    +
    +
    Voltage clamp.
    +
    +
    class 
    +
    VoltageClampTriple
    +
    +
    Voltage clamp with 3 clamp levels.
    +
    +
    +
    Methods in org.neuroml.model that return Standalone
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    Standalone
    +
    ObjectFactory.createStandalone()
    +
    +
    Create an instance of Standalone
    +
    +
    +
    +
    • +
  • +
    +

    Uses of Standalone in org.neuroml.model.util

    +
    Methods in org.neuroml.model.util that return types with arguments of type Standalone
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    static LinkedHashMap<String,Standalone>
    +
    NeuroMLConverter.getAllStandaloneElements(NeuroMLDocument nmlDocument)
    +
     
    +
    +
    Methods in org.neuroml.model.util with parameters of type Standalone
    +
    +
    Modifier and Type
    +
    Method
    +
    Description
    +
    static void
    +
    NeuroMLConverter.addElementToDocument(NeuroMLDocument nmlDocument, + Standalone nmlElement)
    +
     
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/StateAssignment.html b/org/neuroml/model/class-use/StateAssignment.html new file mode 100644 index 00000000..79565da8 --- /dev/null +++ b/org/neuroml/model/class-use/StateAssignment.html @@ -0,0 +1,133 @@ + + + + +Uses of Class org.neuroml.model.StateAssignment (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.StateAssignment

+
+
Packages that use StateAssignment
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/StateVariable.html b/org/neuroml/model/class-use/StateVariable.html new file mode 100644 index 00000000..b8f4abe6 --- /dev/null +++ b/org/neuroml/model/class-use/StateVariable.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.StateVariable (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.StateVariable

+
+
Packages that use StateVariable
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SubTree.html b/org/neuroml/model/class-use/SubTree.html new file mode 100644 index 00000000..51798975 --- /dev/null +++ b/org/neuroml/model/class-use/SubTree.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SubTree (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SubTree

+
+
Packages that use SubTree
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/SynapticConnection.html b/org/neuroml/model/class-use/SynapticConnection.html new file mode 100644 index 00000000..ae7a60f4 --- /dev/null +++ b/org/neuroml/model/class-use/SynapticConnection.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.SynapticConnection (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.SynapticConnection

+
+
Packages that use SynapticConnection
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/TauInfTransition.html b/org/neuroml/model/class-use/TauInfTransition.html new file mode 100644 index 00000000..d9e604d3 --- /dev/null +++ b/org/neuroml/model/class-use/TauInfTransition.html @@ -0,0 +1,89 @@ + + + + +Uses of Class org.neuroml.model.TauInfTransition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.TauInfTransition

+
+
Packages that use TauInfTransition
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/TimeDerivative.html b/org/neuroml/model/class-use/TimeDerivative.html new file mode 100644 index 00000000..9264f3b5 --- /dev/null +++ b/org/neuroml/model/class-use/TimeDerivative.html @@ -0,0 +1,117 @@ + + + + +Uses of Class org.neuroml.model.TimeDerivative (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.TimeDerivative

+
+
Packages that use TimeDerivative
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/TimedSynapticInput.html b/org/neuroml/model/class-use/TimedSynapticInput.html new file mode 100644 index 00000000..453eeb27 --- /dev/null +++ b/org/neuroml/model/class-use/TimedSynapticInput.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.TimedSynapticInput (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.TimedSynapticInput

+
+
Packages that use TimedSynapticInput
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/TransientPoissonFiringSynapse.html b/org/neuroml/model/class-use/TransientPoissonFiringSynapse.html new file mode 100644 index 00000000..ff521c27 --- /dev/null +++ b/org/neuroml/model/class-use/TransientPoissonFiringSynapse.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.TransientPoissonFiringSynapse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.TransientPoissonFiringSynapse

+
+
Packages that use TransientPoissonFiringSynapse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/Transition.html b/org/neuroml/model/class-use/Transition.html new file mode 100644 index 00000000..4ccd2bc5 --- /dev/null +++ b/org/neuroml/model/class-use/Transition.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.Transition (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.Transition

+
+
Packages that use Transition
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/TrueOrFalse.html b/org/neuroml/model/class-use/TrueOrFalse.html new file mode 100644 index 00000000..415f4a82 --- /dev/null +++ b/org/neuroml/model/class-use/TrueOrFalse.html @@ -0,0 +1,123 @@ + + + + +Uses of Enum org.neuroml.model.TrueOrFalse (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Enum
org.neuroml.model.TrueOrFalse

+
+
Packages that use TrueOrFalse
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/UnstructuredLayout.html b/org/neuroml/model/class-use/UnstructuredLayout.html new file mode 100644 index 00000000..4b41805a --- /dev/null +++ b/org/neuroml/model/class-use/UnstructuredLayout.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.UnstructuredLayout (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.UnstructuredLayout

+
+
Packages that use UnstructuredLayout
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/VariableParameter.html b/org/neuroml/model/class-use/VariableParameter.html new file mode 100644 index 00000000..0417d34e --- /dev/null +++ b/org/neuroml/model/class-use/VariableParameter.html @@ -0,0 +1,149 @@ + + + + +Uses of Class org.neuroml.model.VariableParameter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.VariableParameter

+
+
Packages that use VariableParameter
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/VoltageClamp.html b/org/neuroml/model/class-use/VoltageClamp.html new file mode 100644 index 00000000..637a0951 --- /dev/null +++ b/org/neuroml/model/class-use/VoltageClamp.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.VoltageClamp (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.VoltageClamp

+
+
Packages that use VoltageClamp
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/class-use/VoltageClampTriple.html b/org/neuroml/model/class-use/VoltageClampTriple.html new file mode 100644 index 00000000..3d5028e4 --- /dev/null +++ b/org/neuroml/model/class-use/VoltageClampTriple.html @@ -0,0 +1,109 @@ + + + + +Uses of Class org.neuroml.model.VoltageClampTriple (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.VoltageClampTriple

+
+
Packages that use VoltageClampTriple
+
+
Package
+
Description
+
org.neuroml.model
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/package-summary.html b/org/neuroml/model/package-summary.html new file mode 100644 index 00000000..3add06f8 --- /dev/null +++ b/org/neuroml/model/package-summary.html @@ -0,0 +1,1370 @@ + + + + +org.neuroml.model (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Package org.neuroml.model

+
+
+
package org.neuroml.model
+
+
    +
  • + +
    • +
  • +
    +
    +
    +
    +
    Class
    +
    Description
    +
    Adapter1
    +
     
    +
    Adapter2
    +
     
    +
    AdExIaFCell
    +
    +
    Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
    +
    +
    AllowedSpaces
    +
    +
    Java class for allowedSpaces.
    +
    +
    AlphaCondSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    AlphaCurrentSynapse
    +
    +
    Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current
    +
    +
    AlphaCurrSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    AlphaSynapse
    +
    +
    Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    Annotation
    +
    +
    A structured annotation containing metadata, specifically RDF or **property** elements
    +
    +
    Base
    +
    +
    Anything which can have a unique (within its parent) id of the form NmlId (spaceless combination of letters, numbers and underscore).
    +
    +
    BaseCell
    +
    +
    Base type of any cell ( e.
    +
    +
    BaseCellMembPotCap
    +
    +
    Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    BaseConductanceBasedSynapse
    +
    +
    Synapse model which exposes a conductance **g** in addition to producing a current.
    +
    +
    BaseConductanceBasedSynapseTwo
    +
    +
    Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
    +
    +
    BaseConnection
    +
    +
    Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
    +
    +
    BaseConnectionNewFormat
    +
    +
    Base of all synaptic connections with preCell, postSegment, etc.
    +
    +
    BaseConnectionOldFormat
    +
    +
    Base of all synaptic connections with preCellId, postSegmentId, etc.
    +
    +
    BaseCurrentBasedSynapse
    +
    +
    Synapse model which produces a synaptic current.
    +
    +
    BaseNonNegativeIntegerId
    +
    +
    Anything which can have a unique (within its parent) id, which must be an integer zero or greater.
    +
    +
    BaseProjection
    +
    +
    Base for projection (set of synaptic connections) between two populations
    +
    +
    BasePyNNCell
    +
    +
    Base type of any PyNN standard cell model.
    +
    +
    BasePyNNIaFCell
    +
    +
    Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    BasePyNNIaFCondCell
    +
    +
    Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    BasePynnSynapse
    +
    +
    Base type for all PyNN synapses.
    +
    +
    BaseSynapse
    +
    +
    Base type for all synapses, i.
    +
    +
    BaseVoltageDepSynapse
    +
    +
    Base type for synapses with a dependence on membrane potential
    +
    +
    BaseWithoutId
    +
    +
    Base element without ID specified *yet*, e.g.
    +
    +
    BiophysicalProperties
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
    +
    +
    BiophysicalProperties2CaPools
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
    +
    +
    BlockingPlasticSynapse
    +
    +
    Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
    +
    +
    BlockMechanism
    +
    +
    Java class for BlockMechanism complex type.
    +
    +
    BlockTypes
    +
    +
    Java class for BlockTypes.
    +
    +
    Case
    +
    +
    Java class for Case complex type.
    +
    +
    Cell
    +
    +
    Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
    +
    +
    Cell2CaPools
    +
    +
    Variant of cell with two independent Ca2+ pools.
    +
    +
    CellSet
    +
    +
    Java class for CellSet complex type.
    +
    +
    ChannelDensity
    +
    +
    Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** + \n + :param erev: The reversal potential of the current produced + :type erev: voltage + :param condDensity: + :type condDensity: conductanceDensity
    +
    +
    ChannelDensityGHK
    +
    +
    Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation.
    +
    +
    ChannelDensityGHK2
    +
    +
    Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al.
    +
    +
    ChannelDensityNernst
    +
    +
    Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation.
    +
    +
    ChannelDensityNernstCa2
    +
    +
    This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ).
    +
    +
    ChannelDensityNonUniform
    +
    +
    Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** .
    +
    +
    ChannelDensityNonUniformGHK
    +
    +
    Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation.
    +
    +
    ChannelDensityNonUniformNernst
    +
    +
    Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation.
    +
    +
    ChannelDensityVShift
    +
    +
    Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    ChannelPopulation
    +
    +
    Population of a **number** of ohmic ion channels.
    +
    +
    ChannelTypes
    +
    +
    Java class for channelTypes.
    +
    +
    ClosedState
    +
    +
    A **KSState** with **relativeConductance** of 0 + \n + :param relativeConductance: + :type relativeConductance: none
    +
    +
    ComponentType
    +
    +
    Contains an extension to NeuroML by creating custom LEMS ComponentType.
    +
    +
    CompoundInput
    +
    +
    Generates a current which is the sum of all its child **basePointCurrent** element, e.
    +
    +
    CompoundInputDL
    +
    +
    Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
    +
    +
    ConcentrationModelD
    +
    +
    Java class for ConcentrationModel_D complex type.
    +
    +
    ConditionalDerivedVariable
    +
    +
    Java class for ConditionalDerivedVariable complex type.
    +
    +
    Connection
    +
    +
    Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component.
    +
    +
    ConnectionWD
    +
    +
    Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection + \n + :param weight: + :type weight: none + :param delay: + :type delay: time
    +
    +
    Constant
    +
    +
    LEMS ComponentType for Constant.
    +
    +
    ContinuousConnection
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    ContinuousConnectionInstance
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    ContinuousConnectionInstanceW
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    ContinuousProjection
    +
    +
    A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** .
    +
    +
    DecayingPoolConcentrationModel
    +
    +
    Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param shellThickness: + :type shellThickness: length
    +
    +
    DerivedParameter
    +
    +
    LEMS DerivedParamter element
    +
    +
    DerivedVariable
    +
    +
    LEMS ComponentType for DerivedVariable
    +
    +
    DistalDetails
    +
    +
    What to do at the distal point when creating an inhomogeneous parameter
    +
    +
    DoubleSynapse
    +
    +
    Synapse consisting of two independent synaptic mechanisms ( e.
    +
    +
    Dynamics
    +
    +
    LEMS ComponentType for Dynamics
    +
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    ElectricalConnection
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    ElectricalConnectionInstance
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    ElectricalConnectionInstanceW
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    ElectricalProjection
    +
    +
    A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions.
    +
    +
    EventOut
    +
    +
    Java class for EventOut complex type.
    +
    +
    ExpCondSynapse
    +
    +
    Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none
    +
    +
    ExpCurrSynapse
    +
    +
    Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none
    +
    +
    ExplicitInput
    +
    +
    An explicit input ( anything which extends **basePointCurrent** ) to a target cell in a population
    +
    +
    ExpOneSynapse
    +
    +
    Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    Exposure
    +
    +
    LEMS Exposure (ComponentType property)
    +
    +
    ExpThreeSynapse
    +
    +
    Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
    +
    +
    ExpTwoSynapse
    +
    +
    Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    ExtracellularProperties
    +
    +
    Java class for ExtracellularProperties complex type.
    +
    +
    ExtracellularPropertiesLocal
    +
    +
    Java class for ExtracellularPropertiesLocal complex type.
    +
    +
    FitzHughNagumo1969Cell
    +
    +
    The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
    +
    +
    FitzHughNagumoCell
    +
    +
    Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
    +
    +
    FixedFactorConcentrationModel
    +
    +
    Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
    +
    +
    ForwardTransition
    +
    +
    A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
    +
    +
    GapJunction
    +
    +
    Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance
    +
    +
    GateFractional
    +
    +
    Gate composed of subgates contributing with fractional conductance + \n + :param instances: + :type instances: none
    +
    +
    GateFractionalSubgate
    +
    +
    Java class for GateFractionalSubgate complex type.
    +
    +
    GateHHInstantaneous
    +
    +
    Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value + \n + :param instances: + :type instances: none
    +
    +
    GateHHRates
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHRatesInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHRatesTau
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHRatesTauInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHTauInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHUndetermined
    +
    +
    Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc.
    +
    +
    GateKS
    +
    +
    A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param instances: + :type instances: none
    +
    +
    GateTypes
    +
    +
    Java class for gateTypes.
    +
    +
    GradedSynapse
    +
    +
    Graded/analog synapse.
    +
    +
    GridLayout
    +
    +
    Java class for GridLayout complex type.
    +
    +
    HHCondExp
    +
    +
    Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
    +
    +
    HHRate
    +
    +
    Java class for HHRate complex type.
    +
    +
    HHTime
    +
    +
    Java class for HHTime complex type.
    +
    +
    HHVariable
    +
    +
    Java class for HHVariable complex type.
    +
    +
    HindmarshRose1984Cell
    +
    +
    The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
    +
    +
    IafCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    IafRefCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    IafTauCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    IafTauRefCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    IFCurrAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    IFCurrExp
    +
    +
    Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    Include
    +
    +
    Include all members of another **segmentGroup** in this group
    +
    +
    IncludeType
    +
    +
    Java class for IncludeType complex type.
    +
    +
    InhomogeneousParameter
    +
    +
    An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ).
    +
    +
    InhomogeneousValue
    +
    +
    Specifies the **value** of an **inhomogeneousParameter.** For usage see **variableParameter**
    +
    +
    InitMembPotential
    +
    +
    Explicitly set initial membrane potential for the cell + \n + :param value: + :type value: voltage
    +
    +
    Input
    +
    +
    Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
    +
    +
    InputList
    +
    +
    An explicit list of **input** s to a **population.**
    +
    +
    InputW
    +
    +
    Specifies input lists.
    +
    +
    Instance
    +
    +
    Specifies a single instance of a component in a **population** ( placed at **location** ).
    +
    +
    InstanceRequirement
    +
    +
    Java class for InstanceRequirement complex type.
    +
    +
    IntracellularProperties
    +
    +
    Biophysical properties related to the intracellular space within the **cell** , such as the **resistivity** and the list of ionic **species** present.
    +
    +
    IntracellularProperties2CaPools
    +
    +
    Variant of intracellularProperties with 2 independent Ca pools
    +
    +
    IonChannel
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    IonChannelHH
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    IonChannelKS
    +
    +
    A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param conductance: + :type conductance: conductance
    +
    +
    IonChannelScalable
    +
    +
    Java class for IonChannelScalable complex type.
    +
    +
    IonChannelVShift
    +
    +
    Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    Izhikevich2007Cell
    +
    +
    Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    IzhikevichCell
    +
    +
    Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage
    +
    +
    Layout
    +
    +
    Java class for Layout complex type.
    +
    +
    LEMSProperty
    +
    +
    Java class for LEMS_Property complex type.
    +
    +
    LinearGradedSynapse
    +
    +
    Behaves just like a one way gap junction.
    +
    +
    Location
    +
    +
    Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** + \n + :param x: + :type x: none + :param y: + :type y: none + :param z: + :type z: none
    +
    +
    Member
    +
    +
    A single identified **segment** which is part of the **segmentGroup**
    +
    +
    MembraneProperties
    +
    +
    Properties specific to the membrane, such as the **populations** of channels, **channelDensities,** **specificCapacitance,** etc.
    +
    +
    MembraneProperties2CaPools
    +
    +
    Variant of membraneProperties with 2 independent Ca pools
    +
    +
    Metric
    +
    +
    Java class for Metric.
    +
    +
    Morphology
    +
    +
    The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
    +
    +
    NamedDimensionalType
    +
    +
    Java class for NamedDimensionalType complex type.
    +
    +
    NamedDimensionalVariable
    +
    +
    Java class for NamedDimensionalVariable complex type.
    +
    +
    Network
    +
    +
    Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
    +
    +
    NetworkTypes
    +
    +
    Java class for networkTypes.
    +
    +
    NeuroMLDocument
    +
    +
    Java class for NeuroMLDocument complex type.
    +
    +
    ObjectFactory
    +
    +
    This object contains factory methods for each + Java content interface and Java element interface + generated in the org.neuroml.model package.
    +
    +
    OnCondition
    +
    +
    Java class for OnCondition complex type.
    +
    +
    OnEntry
    +
    +
    Java class for OnEntry complex type.
    +
    +
    OnEvent
    +
    +
    Java class for OnEvent complex type.
    +
    +
    OnStart
    +
    +
    Java class for OnStart complex type.
    +
    +
    OpenState
    +
    +
    A **KSState** with **relativeConductance** of 1 + \n + :param relativeConductance: + :type relativeConductance: none
    +
    +
    Parameter
    +
    +
    Java class for Parameter complex type.
    +
    +
    Path
    +
    +
    Include all the **segment** s between those specified by **from** and **to** , inclusive
    +
    +
    PinskyRinzelCA3Cell
    +
    +
    Reduced CA3 cell model from Pinsky, P.
    +
    +
    PlasticityMechanism
    +
    +
    Java class for PlasticityMechanism complex type.
    +
    +
    PlasticityTypes
    +
    +
    Java class for PlasticityTypes.
    +
    +
    Point3DWithDiam
    +
    +
    Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ).
    +
    +
    PoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
    +
    +
    Population
    +
    +
    A population of components, with just one parameter for the **size,** i.
    +
    +
    PopulationTypes
    +
    +
    Java class for populationTypes.
    +
    +
    Projection
    +
    +
    Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements.
    +
    +
    Property
    +
    +
    A property ( a **tag** and **value** pair ), which can be on any **baseStandalone** either as a direct child, or within an **Annotation** .
    +
    +
    ProximalDetails
    +
    +
    What to do at the proximal point when creating an inhomogeneous parameter
    +
    +
    PulseGenerator
    +
    +
    Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    PulseGeneratorDL
    +
    +
    Dimensionless equivalent of **pulseGenerator** .
    +
    +
    Q10ConductanceScaling
    +
    +
    A value for the conductance scaling which varies as a standard function of the difference between the current temperature, **temperature,** and the temperature at which the conductance was originally determined, **experimentalTemp** + \n + :param q10Factor: + :type q10Factor: none + :param experimentalTemp: + :type experimentalTemp: temperature
    +
    +
    Q10Settings
    +
    +
    Java class for Q10Settings complex type.
    +
    +
    RampGenerator
    +
    +
    Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    RampGeneratorDL
    +
    +
    Dimensionless equivalent of **rampGenerator** .
    +
    +
    RandomLayout
    +
    +
    Java class for RandomLayout complex type.
    +
    +
    ReactionScheme
    +
    +
    Java class for ReactionScheme complex type.
    +
    +
    Regime
    +
    +
    Java class for Regime complex type.
    +
    +
    Region
    +
    +
    Initial attempt to specify 3D region for placing cells.
    +
    +
    Requirement
    +
    +
    Java class for Requirement complex type.
    +
    +
    Resistivity
    +
    +
    The resistivity, or specific axial resistance, of the cytoplasm + \n + :param value: + :type value: resistivity
    +
    +
    ReverseTransition
    +
    +
    A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
    +
    +
    Segment
    +
    +
    A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
    +
    +
    SegmentEndPoint
    +
    +
    Java class for SegmentEndPoint complex type.
    +
    +
    SegmentGroup
    +
    +
    A method to describe a group of **segment** s in a **morphology** , e.
    +
    +
    SegmentParent
    +
    +
    Java class for SegmentParent complex type.
    +
    +
    SilentSynapse
    +
    +
    Dummy synapse which emits no current.
    +
    +
    SineGenerator
    +
    +
    Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
    +
    +
    SineGeneratorDL
    +
    +
    Dimensionless equivalent of **sineGenerator** .
    +
    +
    Space
    +
    +
    Java class for Space complex type.
    +
    +
    SpaceStructure
    +
    +
    Java class for SpaceStructure complex type.
    +
    +
    Species
    +
    +
    Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration + \n + :param initialConcentration: + :type initialConcentration: concentration + :param initialExtConcentration: + :type initialExtConcentration: concentration
    +
    +
    SpecificCapacitance
    +
    +
    Capacitance per unit area + \n + :param value: + :type value: specificCapacitance
    +
    +
    Spike
    +
    +
    Emits a single spike at the specified **time** + \n + :param time: Time at which to emit one spike event + :type time: time
    +
    +
    SpikeArray
    +
    +
    Set of spike ComponentTypes, each emitting one spike at a certain time.
    +
    +
    SpikeGenerator
    +
    +
    Simple generator of spikes at a regular interval set by **period** + \n + :param period: Time between spikes.
    +
    +
    SpikeGeneratorPoisson
    +
    +
    Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    SpikeGeneratorRandom
    +
    +
    Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** + \n + :param maxISI: Maximum interspike interval + :type maxISI: time + :param minISI: Minimum interspike interval + :type minISI: time
    +
    +
    SpikeGeneratorRefPoisson
    +
    +
    Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** + \n + :param minimumISI: The minimum interspike interval + :type minimumISI: time + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    SpikeSourcePoisson
    +
    +
    Spike source, generating spikes according to a Poisson process.
    +
    +
    SpikeThresh
    +
    +
    Membrane potential at which to emit a spiking event.
    +
    +
    Standalone
    +
    +
    Elements which can stand alone and be referenced by id, e.g.
    +
    +
    StateAssignment
    +
    +
    Java class for StateAssignment complex type.
    +
    +
    StateVariable
    +
    +
    Java class for StateVariable complex type.
    +
    +
    SubTree
    +
    +
    Include all the **segment** s distal to that specified by **from** in the **segmentGroup**
    +
    +
    SynapticConnection
    +
    +
    Explicit event connection between named components, which gets processed via a new instance of a **synapse** component which is created on the target component
    +
    +
    TauInfTransition
    +
    +
    KS Transition specified in terms of time constant **tau** and steady state **inf**
    +
    +
    TimeDerivative
    +
    +
    Java class for TimeDerivative complex type.
    +
    +
    TimedSynapticInput
    +
    +
    Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
    +
    +
    TransientPoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
    +
    +
    Transition
    +
    +
    Java class for Transition complex type.
    +
    +
    TrueOrFalse
    +
    +
    Java class for TrueOrFalse.
    +
    +
    UnstructuredLayout
    +
    +
    Java class for UnstructuredLayout complex type.
    +
    +
    VariableParameter
    +
    +
    Specifies a **parameter** ( e.
    +
    +
    VoltageClamp
    +
    +
    Voltage clamp.
    +
    +
    VoltageClampTriple
    +
    +
    Voltage clamp with 3 clamp levels.
    +
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

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+
+
+ + diff --git a/org/neuroml/model/package-tree.html b/org/neuroml/model/package-tree.html new file mode 100644 index 00000000..7789eba5 --- /dev/null +++ b/org/neuroml/model/package-tree.html @@ -0,0 +1,420 @@ + + + + +org.neuroml.model Class Hierarchy (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Hierarchy For Package org.neuroml.model

+Package Hierarchies: + +
+
+

Class Hierarchy

+
    +
  • java.lang.Object +
      +
    • org.neuroml.model.BaseWithoutId (implements org.jvnet.jaxb2_commons.lang.ToString2) +
        +
      • org.neuroml.model.Annotation (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Base (implements org.jvnet.jaxb2_commons.lang.ToString2) +
          +
        • org.neuroml.model.BaseProjection (implements org.jvnet.jaxb2_commons.lang.ToString2) +
            +
          • org.neuroml.model.ContinuousProjection (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.ElectricalProjection (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.Projection (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          +
          • +
        • org.neuroml.model.CellSet (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensity (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
          • +
        • org.neuroml.model.ChannelDensityGHK (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensityGHK2 (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensityNernst (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
          • +
        • org.neuroml.model.ChannelDensityNonUniform (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensityNonUniformGHK (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensityNonUniformNernst (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelPopulation (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ClosedState (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ExtracellularProperties (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ExtracellularPropertiesLocal (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ForwardTransition (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateFractional (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateFractionalSubgate (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHInstantaneous (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHRates (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHRatesInf (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHRatesTau (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHRatesTauInf (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHTauInf (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHUndetermined (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateKS (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.InhomogeneousParameter (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.InputList (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.OpenState (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ReactionScheme (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Region (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ReverseTransition (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.SegmentGroup (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Space (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Species (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Standalone (implements org.jvnet.jaxb2_commons.lang.ToString2) +
            +
          • org.neuroml.model.BaseCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
              +
            • org.neuroml.model.BaseCellMembPotCap (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.AdExIaFCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.HindmarshRose1984Cell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.Izhikevich2007Cell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.BasePyNNCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.BasePyNNIaFCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                  +
                • org.neuroml.model.BasePyNNIaFCondCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                    +
                  • org.neuroml.model.EIFCondExpIsfaIsta (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
                    • +
                  • org.neuroml.model.IFCondAlpha (implements org.jvnet.jaxb2_commons.lang.ToString2)
                    • +
                  • org.neuroml.model.IFCondExp (implements org.jvnet.jaxb2_commons.lang.ToString2)
                    • +
                  +
                  • +
                • org.neuroml.model.IFCurrAlpha (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                • org.neuroml.model.IFCurrExp (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                +
                • +
              • org.neuroml.model.HHCondExp (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.Cell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.Cell2CaPools (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.FitzHughNagumo1969Cell (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.FitzHughNagumoCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.IafCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.IafRefCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.IafTauCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.IafTauRefCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.IzhikevichCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.PinskyRinzelCA3Cell (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            +
            • +
          • org.neuroml.model.BaseSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) +
              +
            • org.neuroml.model.BaseCurrentBasedSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
              • +
            • org.neuroml.model.BasePynnSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.AlphaCondSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.AlphaCurrSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.ExpCondSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.ExpCurrSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.BaseVoltageDepSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.BaseConductanceBasedSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                  +
                • org.neuroml.model.AlphaSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                • org.neuroml.model.ExpOneSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                • org.neuroml.model.ExpTwoSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
                  • +
                +
                • +
              • org.neuroml.model.BaseConductanceBasedSynapseTwo (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                  +
                • org.neuroml.model.ExpThreeSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                +
                • +
              • org.neuroml.model.DoubleSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.GapJunction (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.GradedSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.LinearGradedSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.SilentSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            +
            • +
          • org.neuroml.model.BiophysicalProperties (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.BiophysicalProperties2CaPools (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.CompoundInput (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.CompoundInputDL (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.DecayingPoolConcentrationModel (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
            • +
          • org.neuroml.model.FixedFactorConcentrationModel (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.IonChannelKS (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.IonChannelScalable (implements org.jvnet.jaxb2_commons.lang.ToString2) +
              +
            • org.neuroml.model.IonChannel (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.IonChannelHH (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.IonChannelVShift (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            +
            • +
          • org.neuroml.model.Morphology (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.Network (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.NeuroMLDocument (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.PoissonFiringSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.Population (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.PulseGenerator (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.PulseGeneratorDL (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.RampGenerator (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.RampGeneratorDL (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SineGenerator (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SineGeneratorDL (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SpikeArray (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SpikeGenerator (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SpikeGeneratorPoisson (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
            • +
          • org.neuroml.model.SpikeGeneratorRandom (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SpikeSourcePoisson (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.TimedSynapticInput (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.TransientPoissonFiringSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.VoltageClamp (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.VoltageClampTriple (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          +
          • +
        • org.neuroml.model.TauInfTransition (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        +
        • +
      • org.neuroml.model.BaseNonNegativeIntegerId (implements org.jvnet.jaxb2_commons.lang.ToString2) +
          +
        • org.neuroml.model.BaseConnection (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
          • +
        • org.neuroml.model.Input (implements org.jvnet.jaxb2_commons.lang.ToString2) +
            +
          • org.neuroml.model.InputW (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          +
          • +
        • org.neuroml.model.Segment (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Spike (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        +
        • +
      • org.neuroml.model.BlockMechanism (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Constant (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.DistalDetails (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.ExplicitInput (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Exposure (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.GridLayout (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.HHRate (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.HHTime (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.HHVariable (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Include (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.InhomogeneousValue (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.InitMembPotential (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Instance (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.IntracellularProperties (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
        • +
      • org.neuroml.model.Layout (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Location (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Member (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.MembraneProperties (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
        • +
      • org.neuroml.model.NamedDimensionalType (implements org.jvnet.jaxb2_commons.lang.ToString2) +
          +
        • org.neuroml.model.DerivedParameter (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.LEMSProperty (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Parameter (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Requirement (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        +
        • +
      • org.neuroml.model.NamedDimensionalVariable (implements org.jvnet.jaxb2_commons.lang.ToString2) +
          +
        • org.neuroml.model.ConditionalDerivedVariable (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.DerivedVariable (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.StateVariable (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        +
        • +
      • org.neuroml.model.Path (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.PlasticityMechanism (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Point3DWithDiam (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Property (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.ProximalDetails (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Q10ConductanceScaling (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.RandomLayout (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Resistivity (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SegmentEndPoint (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SegmentParent (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SpaceStructure (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SpecificCapacitance (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SpikeThresh (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SubTree (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SynapticConnection (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.UnstructuredLayout (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      +
      • +
    • org.neuroml.model.Case (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.ComponentType (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.Dynamics (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.EventOut (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.IncludeType (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.InstanceRequirement (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.ObjectFactory
      • +
    • org.neuroml.model.OnCondition (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.OnEntry (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.OnEvent (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.OnStart (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.Q10Settings (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.Regime (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.StateAssignment (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.TimeDerivative (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.Transition (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.VariableParameter (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • javax.xml.bind.annotation.adapters.XmlAdapter<ValueType,BoundType> + +
      • +
    +
    • +
+
+
+

Enum Hierarchy

+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/package-use.html b/org/neuroml/model/package-use.html new file mode 100644 index 00000000..9762f473 --- /dev/null +++ b/org/neuroml/model/package-use.html @@ -0,0 +1,1433 @@ + + + + +Uses of Package org.neuroml.model (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
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Uses of Package
org.neuroml.model

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Packages that use org.neuroml.model
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Package
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Description
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org.neuroml.model
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org.neuroml.model.util
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org.neuroml.model.util.hdf5
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  • +
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    Classes in org.neuroml.model used by org.neuroml.model
    +
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    Class
    +
    Description
    +
    AdExIaFCell
    +
    +
    Model based on Brette R and Gerstner W ( 2005 ) Adaptive Exponential Integrate-and-Fire Model as an Effective Description of Neuronal Activity.
    +
    +
    AllowedSpaces
    +
    +
    Java class for allowedSpaces.
    +
    +
    AlphaCondSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    AlphaCurrentSynapse
    +
    +
    Alpha current synapse: rise time and decay time are both **tau.** + \n + :param tau: Time course for rise and decay + :type tau: time + :param ibase: Baseline current increase after receiving a spike + :type ibase: current
    +
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    AlphaCurrSynapse
    +
    +
    Alpha synapse: rise time and decay time are both tau_syn.
    +
    +
    AlphaSynapse
    +
    +
    Ohmic synapse model where rise time and decay time are both **tau.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tau: Time course of rise/decay + :type tau: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
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    Annotation
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    +
    A structured annotation containing metadata, specifically RDF or **property** elements
    +
    +
    Base
    +
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    Anything which can have a unique (within its parent) id of the form NmlId (spaceless combination of letters, numbers and underscore).
    +
    +
    BaseCell
    +
    +
    Base type of any cell ( e.
    +
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    BaseCellMembPotCap
    +
    +
    Any cell with a membrane potential **v** with voltage units and a membrane capacitance **C.** Also defines exposed value **iSyn** for current due to external synapses and **iMemb** for total transmembrane current ( usually channel currents plus **iSyn** ) + \n + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    BaseConductanceBasedSynapse
    +
    +
    Synapse model which exposes a conductance **g** in addition to producing a current.
    +
    +
    BaseConductanceBasedSynapseTwo
    +
    +
    Synapse model suited for a sum of two expTwoSynapses which exposes a conductance **g** in addition to producing a current.
    +
    +
    BaseConnection
    +
    +
    Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
    +
    +
    BaseConnectionNewFormat
    +
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    Base of all synaptic connections with preCell, postSegment, etc.
    +
    +
    BaseConnectionOldFormat
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    +
    Base of all synaptic connections with preCellId, postSegmentId, etc.
    +
    +
    BaseCurrentBasedSynapse
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    +
    Synapse model which produces a synaptic current.
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    +
    BaseNonNegativeIntegerId
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    +
    Anything which can have a unique (within its parent) id, which must be an integer zero or greater.
    +
    +
    BaseProjection
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    +
    Base for projection (set of synaptic connections) between two populations
    +
    +
    BasePyNNCell
    +
    +
    Base type of any PyNN standard cell model.
    +
    +
    BasePyNNIaFCell
    +
    +
    Base type of any PyNN standard integrate and fire model + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    BasePyNNIaFCondCell
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    +
    Base type of conductance based PyNN IaF cell models + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    BasePynnSynapse
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    +
    Base type for all PyNN synapses.
    +
    +
    BaseSynapse
    +
    +
    Base type for all synapses, i.
    +
    +
    BaseVoltageDepSynapse
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    +
    Base type for synapses with a dependence on membrane potential
    +
    +
    BaseWithoutId
    +
    +
    Base element without ID specified *yet*, e.g.
    +
    +
    BiophysicalProperties
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties** and the **intracellularProperties**
    +
    +
    BiophysicalProperties2CaPools
    +
    +
    The biophysical properties of the **cell** , including the **membraneProperties2CaPools** and the **intracellularProperties2CaPools** for a cell with two Ca pools
    +
    +
    BlockingPlasticSynapse
    +
    +
    Biexponential synapse that allows for optional block and plasticity mechanisms, which can be expressed as child elements.
    +
    +
    BlockMechanism
    +
    +
    Java class for BlockMechanism complex type.
    +
    +
    BlockTypes
    +
    +
    Java class for BlockTypes.
    +
    +
    Case
    +
    +
    Java class for Case complex type.
    +
    +
    Cell
    +
    +
    Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
    +
    +
    Cell2CaPools
    +
    +
    Variant of cell with two independent Ca2+ pools.
    +
    +
    CellSet
    +
    +
    Java class for CellSet complex type.
    +
    +
    ChannelDensity
    +
    +
    Specifies a time varying ohmic conductance density, **gDensity,** which is distributed on an area of the **cell** ( specified in **membraneProperties** ) with fixed reversal potential **erev** producing a current density **iDensity** + \n + :param erev: The reversal potential of the current produced + :type erev: voltage + :param condDensity: + :type condDensity: conductanceDensity
    +
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    ChannelDensityGHK
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    +
    Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity** and whose reversal potential is calculated from the Goldman Hodgkin Katz equation.
    +
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    ChannelDensityGHK2
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    Time varying conductance density, **gDensity,** which is distributed on an area of the cell, producing a current density **iDensity.** Modified version of Jaffe et al.
    +
    +
    ChannelDensityNernst
    +
    +
    Specifies a time varying conductance density, **gDensity,** which is distributed on an area of the **cell,** producing a current density **iDensity** and whose reversal potential is calculated from the Nernst equation.
    +
    +
    ChannelDensityNernstCa2
    +
    +
    This component is similar to the original component type **channelDensityNernst** but it is changed in order to have a reversal potential that depends on a second independent Ca++ pool ( ca2 ).
    +
    +
    ChannelDensityNonUniform
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    +
    Specifies a time varying ohmic conductance density, which is distributed on a region of the **cell.** The conductance density of the channel is not uniform, but is set using the **variableParameter** .
    +
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    ChannelDensityNonUniformGHK
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    +
    Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose current is calculated from the Goldman-Hodgkin-Katz equation.
    +
    +
    ChannelDensityNonUniformNernst
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    +
    Specifies a time varying conductance density, which is distributed on a region of the **cell,** and whose reversal potential is calculated from the Nernst equation.
    +
    +
    ChannelDensityVShift
    +
    +
    Same as **channelDensity** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    ChannelPopulation
    +
    +
    Population of a **number** of ohmic ion channels.
    +
    +
    ChannelTypes
    +
    +
    Java class for channelTypes.
    +
    +
    ClosedState
    +
    +
    A **KSState** with **relativeConductance** of 0 + \n + :param relativeConductance: + :type relativeConductance: none
    +
    +
    ComponentType
    +
    +
    Contains an extension to NeuroML by creating custom LEMS ComponentType.
    +
    +
    CompoundInput
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    +
    Generates a current which is the sum of all its child **basePointCurrent** element, e.
    +
    +
    CompoundInputDL
    +
    +
    Generates a current which is the sum of all its child **basePointCurrentDL** elements, e.
    +
    +
    ConcentrationModelD
    +
    +
    Java class for ConcentrationModel_D complex type.
    +
    +
    ConditionalDerivedVariable
    +
    +
    Java class for ConditionalDerivedVariable complex type.
    +
    +
    Connection
    +
    +
    Event connection directly between named components, which gets processed via a new instance of a **synapse** component which is created on the target component.
    +
    +
    ConnectionWD
    +
    +
    Event connection between named components, which gets processed via a new instance of a synapse component which is created on the target component, includes setting of **weight** and **delay** for the synaptic connection + \n + :param weight: + :type weight: none + :param delay: + :type delay: time
    +
    +
    Constant
    +
    +
    LEMS ComponentType for Constant.
    +
    +
    ContinuousConnection
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    ContinuousConnectionInstance
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    ContinuousConnectionInstanceW
    +
    +
    An instance of a connection in a **continuousProjection** between **presynapticPopulation** to another **postsynapticPopulation** through a **preComponent** at the start and **postComponent** at the end.
    +
    +
    ContinuousProjection
    +
    +
    A projection between **presynapticPopulation** and **postsynapticPopulation** through components **preComponent** at the start and **postComponent** at the end of a **continuousConnection** or **continuousConnectionInstance** .
    +
    +
    DecayingPoolConcentrationModel
    +
    +
    Model of an intracellular buffering mechanism for **ion** ( currently hard Coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** The ion is assumed to occupy a shell inside the membrane of thickness **shellThickness.** + \n + :param restingConc: + :type restingConc: concentration + :param decayConstant: + :type decayConstant: time + :param shellThickness: + :type shellThickness: length
    +
    +
    DerivedParameter
    +
    +
    LEMS DerivedParamter element
    +
    +
    DerivedVariable
    +
    +
    LEMS ComponentType for DerivedVariable
    +
    +
    DistalDetails
    +
    +
    What to do at the distal point when creating an inhomogeneous parameter
    +
    +
    DoubleSynapse
    +
    +
    Synapse consisting of two independent synaptic mechanisms ( e.
    +
    +
    Dynamics
    +
    +
    LEMS ComponentType for Dynamics
    +
    +
    EIFCondAlphaIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with alpha-function-shaped post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    EIFCondExpIsfaIsta
    +
    +
    Adaptive exponential integrate and fire neuron according to Brette R and Gerstner W ( 2005 ) with exponentially-decaying post-synaptic conductance + \n + :param v_spike: + :type v_spike: none + :param delta_T: + :type delta_T: none + :param tau_w: + :type tau_w: none + :param a: + :type a: none + :param b: + :type b: none + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    ElectricalConnection
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    ElectricalConnectionInstance
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    ElectricalConnectionInstanceW
    +
    +
    To enable connections between populations through gap junctions.
    +
    +
    ElectricalProjection
    +
    +
    A projection between **presynapticPopulation** to another **postsynapticPopulation** through gap junctions.
    +
    +
    EventOut
    +
    +
    Java class for EventOut complex type.
    +
    +
    ExpCondSynapse
    +
    +
    Conductance based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param e_rev: + :type e_rev: none + :param tau_syn: + :type tau_syn: none
    +
    +
    ExpCurrSynapse
    +
    +
    Current based synapse with instantaneous rise and single exponential decay ( with time constant tau_syn ) + \n + :param tau_syn: + :type tau_syn: none
    +
    +
    ExplicitInput
    +
    +
    An explicit input ( anything which extends **basePointCurrent** ) to a target cell in a population
    +
    +
    ExpOneSynapse
    +
    +
    Ohmic synapse model whose conductance rises instantaneously by ( **gbase** * **weight** ) on receiving an event, and which decays exponentially to zero with time course **tauDecay** + \n + :param tauDecay: Time course of decay + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    Exposure
    +
    +
    LEMS Exposure (ComponentType property)
    +
    +
    ExpThreeSynapse
    +
    +
    Ohmic synapse similar to expTwoSynapse but consisting of two components that can differ in decay times and max conductances but share the same rise time.
    +
    +
    ExpTwoSynapse
    +
    +
    Ohmic synapse model whose conductance waveform on receiving an event has a rise time of **tauRise** and a decay time of **tauDecay.** Max conductance reached during this time ( assuming zero conductance before ) is **gbase** * **weight.** + \n + :param tauRise: + :type tauRise: time + :param tauDecay: + :type tauDecay: time + :param gbase: Baseline conductance, generally the maximum conductance following a single spike + :type gbase: conductance + :param erev: Reversal potential of the synapse + :type erev: voltage
    +
    +
    ExtracellularProperties
    +
    +
    Java class for ExtracellularProperties complex type.
    +
    +
    ExtracellularPropertiesLocal
    +
    +
    Java class for ExtracellularPropertiesLocal complex type.
    +
    +
    FitzHughNagumo1969Cell
    +
    +
    The Fitzhugh Nagumo model is a two-dimensional simplification of the Hodgkin-Huxley model of spike generation in squid giant axons.
    +
    +
    FitzHughNagumoCell
    +
    +
    Simple dimensionless model of spiking cell from FitzHugh and Nagumo.
    +
    +
    FixedFactorConcentrationModel
    +
    +
    Model of buffering of concentration of an ion ( currently hard coded to be calcium, due to requirement for **iCa** ) which has a baseline level **restingConc** and tends to this value with time course **decayConstant.** A fixed factor **rho** is used to scale the incoming current *independently of the size of the compartment* to produce a concentration change.
    +
    +
    ForwardTransition
    +
    +
    A forward only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
    +
    +
    GapJunction
    +
    +
    Gap junction/single electrical connection + \n + :param conductance: + :type conductance: conductance
    +
    +
    GateFractional
    +
    +
    Gate composed of subgates contributing with fractional conductance + \n + :param instances: + :type instances: none
    +
    +
    GateFractionalSubgate
    +
    +
    Java class for GateFractionalSubgate complex type.
    +
    +
    GateHHInstantaneous
    +
    +
    Gate which follows the general Hodgkin Huxley formalism but is instantaneous, so tau = 0 and gate follows exactly inf value + \n + :param instances: + :type instances: none
    +
    +
    GateHHRates
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHRatesInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHRatesTau
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHRatesTauInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHTauInf
    +
    +
    Gate which follows the general Hodgkin Huxley formalism + \n + :param instances: + :type instances: none
    +
    +
    GateHHUndetermined
    +
    +
    Note all sub elements for gateHHrates, gateHHratesTau, gateFractional etc.
    +
    +
    GateKS
    +
    +
    A gate which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param instances: + :type instances: none
    +
    +
    GateTypes
    +
    +
    Java class for gateTypes.
    +
    +
    GradedSynapse
    +
    +
    Graded/analog synapse.
    +
    +
    GridLayout
    +
    +
    Java class for GridLayout complex type.
    +
    +
    HHCondExp
    +
    +
    Single-compartment Hodgkin-Huxley-type neuron with transient sodium and delayed-rectifier potassium currents using the ion channel models from Traub.
    +
    +
    HHRate
    +
    +
    Java class for HHRate complex type.
    +
    +
    HHTime
    +
    +
    Java class for HHTime complex type.
    +
    +
    HHVariable
    +
    +
    Java class for HHVariable complex type.
    +
    +
    HindmarshRose1984Cell
    +
    +
    The Hindmarsh Rose model is a simplified point cell model which captures complex firing patterns of single neurons, such as periodic and chaotic bursting.
    +
    +
    IafCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance** and **leakReversal** + \n + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    IafRefCell
    +
    +
    Integrate and fire cell with capacitance **C,** **leakConductance,** **leakReversal** and refractory period **refract** + \n + :param refract: + :type refract: time + :param leakConductance: + :type leakConductance: conductance + :param leakReversal: + :type leakReversal: voltage + :param thresh: + :type thresh: voltage + :param reset: + :type reset: voltage + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    IafTauCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time constant **tau** + \n + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    IafTauRefCell
    +
    +
    Integrate and fire cell which returns to its leak reversal potential of **leakReversal** with a time course **tau.** It has a refractory period of **refract** after spiking + \n + :param refract: + :type refract: time + :param leakReversal: + :type leakReversal: voltage + :param tau: + :type tau: time + :param thresh: The membrane potential at which to emit a spiking event and reset voltage + :type thresh: voltage + :param reset: The value the membrane potential is reset to on spiking + :type reset: voltage
    +
    +
    IFCondAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    IFCondExp
    +
    +
    Leaky integrate and fire model with fixed threshold and exponentially-decaying post-synaptic conductance + \n + :param e_rev_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_E: none + :param e_rev_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type e_rev_I: none + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    IFCurrAlpha
    +
    +
    Leaky integrate and fire model with fixed threshold and alpha-function-shaped post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    IFCurrExp
    +
    +
    Leaky integrate and fire model with fixed threshold and decaying-exponential post-synaptic current + \n + :param tau_refrac: + :type tau_refrac: none + :param v_thresh: + :type v_thresh: none + :param tau_m: + :type tau_m: none + :param v_rest: + :type v_rest: none + :param v_reset: + :type v_reset: none + :param cm: + :type cm: none + :param i_offset: + :type i_offset: none + :param tau_syn_E: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_E: none + :param tau_syn_I: This parameter is never used in the NeuroML2 description of this cell! Any synapse producing a current can be placed on this cell + :type tau_syn_I: none + :param v_init: + :type v_init: none
    +
    +
    Include
    +
    +
    Include all members of another **segmentGroup** in this group
    +
    +
    IncludeType
    +
    +
    Java class for IncludeType complex type.
    +
    +
    InhomogeneousParameter
    +
    +
    An inhomogeneous parameter specified across the **segmentGroup** ( see **variableParameter** for usage ).
    +
    +
    InhomogeneousValue
    +
    +
    Specifies the **value** of an **inhomogeneousParameter.** For usage see **variableParameter**
    +
    +
    InitMembPotential
    +
    +
    Explicitly set initial membrane potential for the cell + \n + :param value: + :type value: voltage
    +
    +
    Input
    +
    +
    Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
    +
    +
    InputList
    +
    +
    An explicit list of **input** s to a **population.**
    +
    +
    InputW
    +
    +
    Specifies input lists.
    +
    +
    Instance
    +
    +
    Specifies a single instance of a component in a **population** ( placed at **location** ).
    +
    +
    InstanceRequirement
    +
    +
    Java class for InstanceRequirement complex type.
    +
    +
    IntracellularProperties
    +
    +
    Biophysical properties related to the intracellular space within the **cell** , such as the **resistivity** and the list of ionic **species** present.
    +
    +
    IntracellularProperties2CaPools
    +
    +
    Variant of intracellularProperties with 2 independent Ca pools
    +
    +
    IonChannel
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    IonChannelHH
    +
    +
    Note **ionChannel** and **ionChannelHH** are currently functionally identical.
    +
    +
    IonChannelKS
    +
    +
    A kinetic scheme based ion channel with multiple **gateKS** s, each of which consists of multiple **KSState** s and **KSTransition** s giving the rates of transition between them + \n + :param conductance: + :type conductance: conductance
    +
    +
    IonChannelScalable
    +
    +
    Java class for IonChannelScalable complex type.
    +
    +
    IonChannelVShift
    +
    +
    Same as **ionChannel** , but with a **vShift** parameter to change voltage activation of gates.
    +
    +
    Izhikevich2007Cell
    +
    +
    Cell based on the modified Izhikevich model in Izhikevich 2007, Dynamical systems in neuroscience, MIT Press + \n + :param v0: Initial membrane potential + :type v0: voltage + :param k: + :type k: conductance_per_voltage + :param vr: Resting membrane potential + :type vr: voltage + :param vt: Spike threshold + :type vt: voltage + :param vpeak: Peak action potential value + :type vpeak: voltage + :param a: Time scale of recovery variable u + :type a: per_time + :param b: Sensitivity of recovery variable u to subthreshold fluctuations of membrane potential v + :type b: conductance + :param c: After-spike reset value of v + :type c: voltage + :param d: After-spike increase to u + :type d: current + :param C: Total capacitance of the cell membrane + :type C: capacitance
    +
    +
    IzhikevichCell
    +
    +
    Cell based on the 2003 model of Izhikevich, see http://izhikevich.org/publications/spikes.htm + \n + :param v0: Initial membrane potential + :type v0: voltage + :param a: Time scale of the recovery variable U + :type a: none + :param b: Sensitivity of U to the subthreshold fluctuations of the membrane potential V + :type b: none + :param c: After-spike reset value of V + :type c: none + :param d: After-spike increase to U + :type d: none + :param thresh: Spike threshold + :type thresh: voltage
    +
    +
    Layout
    +
    +
    Java class for Layout complex type.
    +
    +
    LEMSProperty
    +
    +
    Java class for LEMS_Property complex type.
    +
    +
    LinearGradedSynapse
    +
    +
    Behaves just like a one way gap junction.
    +
    +
    Location
    +
    +
    Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** + \n + :param x: + :type x: none + :param y: + :type y: none + :param z: + :type z: none
    +
    +
    Member
    +
    +
    A single identified **segment** which is part of the **segmentGroup**
    +
    +
    MembraneProperties
    +
    +
    Properties specific to the membrane, such as the **populations** of channels, **channelDensities,** **specificCapacitance,** etc.
    +
    +
    MembraneProperties2CaPools
    +
    +
    Variant of membraneProperties with 2 independent Ca pools
    +
    +
    Metric
    +
    +
    Java class for Metric.
    +
    +
    Morphology
    +
    +
    The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
    +
    +
    NamedDimensionalType
    +
    +
    Java class for NamedDimensionalType complex type.
    +
    +
    NamedDimensionalVariable
    +
    +
    Java class for NamedDimensionalVariable complex type.
    +
    +
    Network
    +
    +
    Network containing: **population** s ( potentially of type **populationList** , and so specifying a list of cell **location** s ); **projection** s ( with lists of **connection** s ) and/or **explicitConnection** s; and **inputList** s ( with lists of **input** s ) and/or **explicitInput** s.
    +
    +
    NetworkTypes
    +
    +
    Java class for networkTypes.
    +
    +
    NeuroMLDocument
    +
    +
    Java class for NeuroMLDocument complex type.
    +
    +
    OnCondition
    +
    +
    Java class for OnCondition complex type.
    +
    +
    OnEntry
    +
    +
    Java class for OnEntry complex type.
    +
    +
    OnEvent
    +
    +
    Java class for OnEvent complex type.
    +
    +
    OnStart
    +
    +
    Java class for OnStart complex type.
    +
    +
    OpenState
    +
    +
    A **KSState** with **relativeConductance** of 1 + \n + :param relativeConductance: + :type relativeConductance: none
    +
    +
    Parameter
    +
    +
    Java class for Parameter complex type.
    +
    +
    Path
    +
    +
    Include all the **segment** s between those specified by **from** and **to** , inclusive
    +
    +
    PinskyRinzelCA3Cell
    +
    +
    Reduced CA3 cell model from Pinsky, P.
    +
    +
    PlasticityMechanism
    +
    +
    Java class for PlasticityMechanism complex type.
    +
    +
    PlasticityTypes
    +
    +
    Java class for PlasticityTypes.
    +
    +
    Point3DWithDiam
    +
    +
    Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ).
    +
    +
    PoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate,** which is connected to single **synapse** that is triggered every time a spike is generated, producing an input current.
    +
    +
    Population
    +
    +
    A population of components, with just one parameter for the **size,** i.
    +
    +
    PopulationTypes
    +
    +
    Java class for populationTypes.
    +
    +
    Projection
    +
    +
    Projection from one population, **presynapticPopulation** to another, **postsynapticPopulation,** through **synapse.** Contains lists of **connection** or **connectionWD** elements.
    +
    +
    Property
    +
    +
    A property ( a **tag** and **value** pair ), which can be on any **baseStandalone** either as a direct child, or within an **Annotation** .
    +
    +
    ProximalDetails
    +
    +
    What to do at the proximal point when creating an inhomogeneous parameter
    +
    +
    PulseGenerator
    +
    +
    Generates a constant current pulse of a certain **amplitude** for a specified **duration** after a **delay.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    PulseGeneratorDL
    +
    +
    Dimensionless equivalent of **pulseGenerator** .
    +
    +
    Q10ConductanceScaling
    +
    +
    A value for the conductance scaling which varies as a standard function of the difference between the current temperature, **temperature,** and the temperature at which the conductance was originally determined, **experimentalTemp** + \n + :param q10Factor: + :type q10Factor: none + :param experimentalTemp: + :type experimentalTemp: temperature
    +
    +
    Q10Settings
    +
    +
    Java class for Q10Settings complex type.
    +
    +
    RampGenerator
    +
    +
    Generates a ramping current after a time **delay,** for a fixed **duration.** During this time the current steadily changes from **startAmplitude** to **finishAmplitude.** Scaled by **weight,** if set + \n + :param delay: Delay before change in current.
    +
    +
    RampGeneratorDL
    +
    +
    Dimensionless equivalent of **rampGenerator** .
    +
    +
    RandomLayout
    +
    +
    Java class for RandomLayout complex type.
    +
    +
    ReactionScheme
    +
    +
    Java class for ReactionScheme complex type.
    +
    +
    Regime
    +
    +
    Java class for Regime complex type.
    +
    +
    Region
    +
    +
    Initial attempt to specify 3D region for placing cells.
    +
    +
    Requirement
    +
    +
    Java class for Requirement complex type.
    +
    +
    Resistivity
    +
    +
    The resistivity, or specific axial resistance, of the cytoplasm + \n + :param value: + :type value: resistivity
    +
    +
    ReverseTransition
    +
    +
    A reverse only **KSTransition** for a **gateKS** which specifies a **rate** ( type **baseHHRate** ) which follows one of the standard Hodgkin Huxley forms ( e.
    +
    +
    Segment
    +
    +
    A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
    +
    +
    SegmentEndPoint
    +
    +
    Java class for SegmentEndPoint complex type.
    +
    +
    SegmentGroup
    +
    +
    A method to describe a group of **segment** s in a **morphology** , e.
    +
    +
    SegmentParent
    +
    +
    Java class for SegmentParent complex type.
    +
    +
    SilentSynapse
    +
    +
    Dummy synapse which emits no current.
    +
    +
    SineGenerator
    +
    +
    Generates a sinusoidally varying current after a time **delay,** for a fixed **duration.** The **period** and maximum **amplitude** of the current can be set as well as the **phase** at which to start.
    +
    +
    SineGeneratorDL
    +
    +
    Dimensionless equivalent of **sineGenerator** .
    +
    +
    Space
    +
    +
    Java class for Space complex type.
    +
    +
    SpaceStructure
    +
    +
    Java class for SpaceStructure complex type.
    +
    +
    Species
    +
    +
    Description of a chemical species identified by **ion,** which has internal, **concentration,** and external, **extConcentration** values for its concentration + \n + :param initialConcentration: + :type initialConcentration: concentration + :param initialExtConcentration: + :type initialExtConcentration: concentration
    +
    +
    SpecificCapacitance
    +
    +
    Capacitance per unit area + \n + :param value: + :type value: specificCapacitance
    +
    +
    Spike
    +
    +
    Emits a single spike at the specified **time** + \n + :param time: Time at which to emit one spike event + :type time: time
    +
    +
    SpikeArray
    +
    +
    Set of spike ComponentTypes, each emitting one spike at a certain time.
    +
    +
    SpikeGenerator
    +
    +
    Simple generator of spikes at a regular interval set by **period** + \n + :param period: Time between spikes.
    +
    +
    SpikeGeneratorPoisson
    +
    +
    Generator of spikes whose ISI is distributed according to an exponential PDF with scale: 1 / **averageRate** + \n + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    SpikeGeneratorRandom
    +
    +
    Generator of spikes with a random interspike interval of at least **minISI** and at most **maxISI** + \n + :param maxISI: Maximum interspike interval + :type maxISI: time + :param minISI: Minimum interspike interval + :type minISI: time
    +
    +
    SpikeGeneratorRefPoisson
    +
    +
    Generator of spikes whose ISI distribution is the maximum entropy distribution over [ **minimumISI,** +infinity ) with mean: 1 / **averageRate** + \n + :param minimumISI: The minimum interspike interval + :type minimumISI: time + :param averageRate: The average rate at which spikes are emitted + :type averageRate: per_time
    +
    +
    SpikeSourcePoisson
    +
    +
    Spike source, generating spikes according to a Poisson process.
    +
    +
    SpikeThresh
    +
    +
    Membrane potential at which to emit a spiking event.
    +
    +
    Standalone
    +
    +
    Elements which can stand alone and be referenced by id, e.g.
    +
    +
    StateAssignment
    +
    +
    Java class for StateAssignment complex type.
    +
    +
    StateVariable
    +
    +
    Java class for StateVariable complex type.
    +
    +
    SubTree
    +
    +
    Include all the **segment** s distal to that specified by **from** in the **segmentGroup**
    +
    +
    SynapticConnection
    +
    +
    Explicit event connection between named components, which gets processed via a new instance of a **synapse** component which is created on the target component
    +
    +
    TauInfTransition
    +
    +
    KS Transition specified in terms of time constant **tau** and steady state **inf**
    +
    +
    TimeDerivative
    +
    +
    Java class for TimeDerivative complex type.
    +
    +
    TimedSynapticInput
    +
    +
    Spike array connected to a single **synapse,** producing a current triggered by each **spike** in the array.
    +
    +
    TransientPoissonFiringSynapse
    +
    +
    Poisson spike generator firing at **averageRate** after a **delay** and for a **duration,** connected to single **synapse** that is triggered every time a spike is generated, providing an input current.
    +
    +
    Transition
    +
    +
    Java class for Transition complex type.
    +
    +
    TrueOrFalse
    +
    +
    Java class for TrueOrFalse.
    +
    +
    UnstructuredLayout
    +
    +
    Java class for UnstructuredLayout complex type.
    +
    +
    VariableParameter
    +
    +
    Specifies a **parameter** ( e.
    +
    +
    VoltageClamp
    +
    +
    Voltage clamp.
    +
    +
    VoltageClampTriple
    +
    +
    Voltage clamp with 3 clamp levels.
    +
    +
    +
    +
    • +
  • +
    +
    Classes in org.neuroml.model used by org.neuroml.model.util
    +
    +
    Class
    +
    Description
    +
    BaseConnection
    +
    +
    Base of all synaptic connections (chemical/electrical/analog, etc.) inside projections
    +
    +
    BaseConnectionNewFormat
    +
    +
    Base of all synaptic connections with preCell, postSegment, etc.
    +
    +
    BaseConnectionOldFormat
    +
    +
    Base of all synaptic connections with preCellId, postSegmentId, etc.
    +
    +
    Cell
    +
    +
    Cell with **segment** s specified in a **morphology** element along with details on its **biophysicalProperties** .
    +
    +
    Input
    +
    +
    Specifies a single input to a **target,** optionally giving the **segmentId** ( default 0 ) and **fractionAlong** the segment ( default 0.
    +
    +
    Morphology
    +
    +
    The collection of **segment** s which specify the 3D structure of the cell, along with a number of **segmentGroup** s
    +
    +
    NeuroMLDocument
    +
    +
    Java class for NeuroMLDocument complex type.
    +
    +
    Point3DWithDiam
    +
    +
    Base type for ComponentTypes which specify an ( **x,** **y,** **z** ) coordinate along with a **diameter.** Note: no dimension used in the attributes for these coordinates! These are assumed to have dimension micrometer ( 10^-6 m ).
    +
    +
    Segment
    +
    +
    A segment defines the smallest unit within a possibly branching structure ( **morphology** ), such as a dendrite or axon.
    +
    +
    SegmentGroup
    +
    +
    A method to describe a group of **segment** s in a **morphology** , e.
    +
    +
    Standalone
    +
    +
    Elements which can stand alone and be referenced by id, e.g.
    +
    +
    +
    +
    • +
  • +
    +
    Classes in org.neuroml.model used by org.neuroml.model.util.hdf5
    +
    +
    Class
    +
    Description
    +
    BaseConnectionOldFormat
    +
    +
    Base of all synaptic connections with preCellId, postSegmentId, etc.
    +
    +
    BaseProjection
    +
    +
    Base for projection (set of synaptic connections) between two populations
    +
    +
    Location
    +
    +
    Specifies the ( x, y, z ) location of a single **instance** of a component in a **population** + \n + :param x: + :type x: none + :param y: + :type y: none + :param z: + :type z: none
    +
    +
    NeuroMLDocument
    +
    +
    Java class for NeuroMLDocument complex type.
    +
    +
    Population
    +
    +
    A population of components, with just one parameter for the **size,** i.
    +
    +
    +
    +
    • +
+
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/CellUtils.html b/org/neuroml/model/util/CellUtils.html new file mode 100644 index 00000000..b88365ac --- /dev/null +++ b/org/neuroml/model/util/CellUtils.html @@ -0,0 +1,372 @@ + + + + +CellUtils (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Class CellUtils

+
+
java.lang.Object +
org.neuroml.model.util.CellUtils
+
+
+
+
public class CellUtils +extends Object
+
+
+ +
+
+ +
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/NeuroML2Validator.html b/org/neuroml/model/util/NeuroML2Validator.html new file mode 100644 index 00000000..d6245f42 --- /dev/null +++ b/org/neuroml/model/util/NeuroML2Validator.html @@ -0,0 +1,574 @@ + + + + +NeuroML2Validator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Class NeuroML2Validator

+
+
java.lang.Object +
org.neuroml.model.util.NeuroML2Validator
+
+
+
+
public class NeuroML2Validator +extends Object
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      VALID_AGAINST_SCHEMA

      +
      public static final String VALID_AGAINST_SCHEMA
      +
      +
      See Also:
      +
      + +
      +
      +
      +
      • +
    • +
      +

      VALID_AGAINST_TESTS

      +
      public static final String VALID_AGAINST_TESTS
      +
      +
      See Also:
      +
      + +
      +
      +
      +
      • +
    • +
      +

      VALID_AGAINST_SCHEMA_AND_TESTS

      +
      public static final String VALID_AGAINST_SCHEMA_AND_TESTS
      +
      +
      See Also:
      +
      + +
      +
      +
      +
      • +
    • +
      +

      NO_WARNINGS

      +
      public static final String NO_WARNINGS
      +
      +
      See Also:
      +
      + +
      +
      +
      +
      • +
    • +
      +

      TEST_TOP_LEVEL_REPEATED_IDS

      +
      public StandardTest TEST_TOP_LEVEL_REPEATED_IDS
      +
      +
      • +
    • +
      +

      TEST_NETWORK_REPEATED_IDS

      +
      public StandardTest TEST_NETWORK_REPEATED_IDS
      +
      +
      • +
    • +
      +

      TEST_REPEATED_IDS

      +
      public StandardTest TEST_REPEATED_IDS
      +
      +
      • +
    • +
      +

      TEST_ONE_SEG_MISSING_PARENT

      +
      public StandardTest TEST_ONE_SEG_MISSING_PARENT
      +
      +
      • +
    • +
      +

      TEST_MEMBER_SEGMENT_EXISTS

      +
      public StandardTest TEST_MEMBER_SEGMENT_EXISTS
      +
      +
      • +
    • +
      +

      TEST_REPEATED_GROUPS

      +
      public StandardTest TEST_REPEATED_GROUPS
      +
      +
      • +
    • +
      +

      WARN_INCLUDE_SEGMENT_GROUP_ORDER

      +
      public StandardTest WARN_INCLUDE_SEGMENT_GROUP_ORDER
      +
      +
      • +
    • +
      +

      TEST_INCLUDE_SEGMENT_GROUP_EXISTS

      +
      public StandardTest TEST_INCLUDE_SEGMENT_GROUP_EXISTS
      +
      +
      • +
    • +
      +

      TEST_SEGMENT_GROUP_IN_BIOPHYSICS_EXISTS

      +
      public StandardTest TEST_SEGMENT_GROUP_IN_BIOPHYSICS_EXISTS
      +
      +
      • +
    • +
      +

      TEST_NUM_INT_DIVS_SEGMENT_GROUP

      +
      public StandardTest TEST_NUM_INT_DIVS_SEGMENT_GROUP
      +
      +
      • +
    • +
      +

      TEST_INCLUDED_FILES_EXIST

      +
      public StandardTest TEST_INCLUDED_FILES_EXIST
      +
      +
      • +
    • +
      +

      TEST_POPULATION_COMPONENT_EXISTS

      +
      public StandardTest TEST_POPULATION_COMPONENT_EXISTS
      +
      +
      • +
    • +
      +

      TEST_ION_CHANNEL_EXISTS

      +
      public StandardTest TEST_ION_CHANNEL_EXISTS
      +
      +
      • +
    • +
      +

      TEST_CONC_MODEL_EXISTS

      +
      public StandardTest TEST_CONC_MODEL_EXISTS
      +
      +
      • +
    • +
      +

      TEST_POPULATION_SIZE_MATCHES_INSTANCES

      +
      public StandardTest TEST_POPULATION_SIZE_MATCHES_INSTANCES
      +
      +
      • +
    • +
      +

      TEST_POPULATIONS_IN_PROJECTIONS

      +
      public StandardTest TEST_POPULATIONS_IN_PROJECTIONS
      +
      +
      • +
    • +
      +

      TEST_SEGMENT_ID_IN_CONNECTION

      +
      public StandardTest TEST_SEGMENT_ID_IN_CONNECTION
      +
      +
      • +
    • +
      +

      TEST_FORMATTING_CELL_ID_IN_CONNECTION

      +
      public StandardTest TEST_FORMATTING_CELL_ID_IN_CONNECTION
      +
      +
      • +
    • +
      +

      TEST_SYNAPSE_IN_PROJECTION

      +
      public StandardTest TEST_SYNAPSE_IN_PROJECTION
      +
      +
      • +
    • +
      +

      WARN_ROOT_ID_0

      +
      public StandardTest WARN_ROOT_ID_0
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      NeuroML2Validator

      +
      public NeuroML2Validator()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    + +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/NeuroMLConverter.html b/org/neuroml/model/util/NeuroMLConverter.html new file mode 100644 index 00000000..3d94d929 --- /dev/null +++ b/org/neuroml/model/util/NeuroMLConverter.html @@ -0,0 +1,586 @@ + + + + +NeuroMLConverter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Class NeuroMLConverter

+
+
java.lang.Object +
org.neuroml.model.util.NeuroMLConverter
+
+
+
+
public class NeuroMLConverter +extends Object
+
+
+ +
+
+ +
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/NeuroMLElements.html b/org/neuroml/model/util/NeuroMLElements.html new file mode 100644 index 00000000..64150975 --- /dev/null +++ b/org/neuroml/model/util/NeuroMLElements.html @@ -0,0 +1,1546 @@ + + + + +NeuroMLElements (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Class NeuroMLElements

+
+
java.lang.Object +
org.neuroml.model.util.NeuroMLElements
+
+
+
+
public class NeuroMLElements +extends Object
+
+
+ +
+
+ +
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/NeuroMLException.html b/org/neuroml/model/util/NeuroMLException.html new file mode 100644 index 00000000..8ee60c5a --- /dev/null +++ b/org/neuroml/model/util/NeuroMLException.html @@ -0,0 +1,169 @@ + + + + +NeuroMLException (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Class NeuroMLException

+
+
java.lang.Object +
java.lang.Throwable +
java.lang.Exception +
org.neuroml.model.util.NeuroMLException
+
+
+
+
+
+
All Implemented Interfaces:
+
Serializable
+
+
+
public class NeuroMLException +extends Exception
+
+
See Also:
+
+ +
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      NeuroMLException

      +
      public NeuroMLException(String message)
      +
      +
      • +
    • +
      +

      NeuroMLException

      +
      public NeuroMLException(Throwable cause)
      +
      +
      • +
    • +
      +

      NeuroMLException

      +
      public NeuroMLException(String message, + Throwable cause)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/NeuroMLNamespacePrefixMapper.html b/org/neuroml/model/util/NeuroMLNamespacePrefixMapper.html new file mode 100644 index 00000000..5b68f587 --- /dev/null +++ b/org/neuroml/model/util/NeuroMLNamespacePrefixMapper.html @@ -0,0 +1,178 @@ + + + + +NeuroMLNamespacePrefixMapper (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Class NeuroMLNamespacePrefixMapper

+
+
java.lang.Object +
org.neuroml.model.util.NeuroMLNamespacePrefixMapper
+
+
+
+
public class NeuroMLNamespacePrefixMapper +extends Object
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    + +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      NeuroMLNamespacePrefixMapper

      +
      public NeuroMLNamespacePrefixMapper()
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/StandardTest.LEVEL.html b/org/neuroml/model/util/StandardTest.LEVEL.html new file mode 100644 index 00000000..37ffa5ad --- /dev/null +++ b/org/neuroml/model/util/StandardTest.LEVEL.html @@ -0,0 +1,226 @@ + + + + +StandardTest.LEVEL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Enum StandardTest.LEVEL

+
+
java.lang.Object +
java.lang.Enum<StandardTest.LEVEL> +
org.neuroml.model.util.StandardTest.LEVEL
+
+
+
+
+
All Implemented Interfaces:
+
Serializable, Comparable<StandardTest.LEVEL>, java.lang.constant.Constable
+
+
+
Enclosing class:
+
StandardTest
+
+
+
public static enum StandardTest.LEVEL +extends Enum<StandardTest.LEVEL>
+
+
+ +
+
+
    + +
  • +
    +

    Enum Constant Details

    + +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      values

      +
      public static StandardTest.LEVEL[] values()
      +
      Returns an array containing the constants of this enum type, in +the order they are declared.
      +
      +
      Returns:
      +
      an array containing the constants of this enum type, in the order they are declared
      +
      +
      +
      • +
    • +
      +

      valueOf

      +
      public static StandardTest.LEVEL valueOf(String name)
      +
      Returns the enum constant of this type with the specified name. +The string must match exactly an identifier used to declare an +enum constant in this type. (Extraneous whitespace characters are +not permitted.)
      +
      +
      Parameters:
      +
      name - the name of the enum constant to be returned.
      +
      Returns:
      +
      the enum constant with the specified name
      +
      Throws:
      +
      IllegalArgumentException - if this enum type has no constant with the specified name
      +
      NullPointerException - if the argument is null
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/StandardTest.html b/org/neuroml/model/util/StandardTest.html new file mode 100644 index 00000000..417fd6bc --- /dev/null +++ b/org/neuroml/model/util/StandardTest.html @@ -0,0 +1,239 @@ + + + + +StandardTest (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Class StandardTest

+
+
java.lang.Object +
org.neuroml.model.util.StandardTest
+
+
+
+
public class StandardTest +extends Object
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      id

      +
      public int id
      +
      +
      • +
    • +
      +

      description

      +
      public String description
      +
      +
      • +
    • +
      +

      level

      +
      public StandardTest.LEVEL level
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      StandardTest

      +
      public StandardTest(int id, + String description)
      +
      +
      • +
    • +
      +

      StandardTest

      +
      public StandardTest(int id, + String description, + StandardTest.LEVEL level)
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      isWarning

      +
      public boolean isWarning()
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/UnitsFormatterUtils.html b/org/neuroml/model/util/UnitsFormatterUtils.html new file mode 100644 index 00000000..a5146639 --- /dev/null +++ b/org/neuroml/model/util/UnitsFormatterUtils.html @@ -0,0 +1,167 @@ + + + + +UnitsFormatterUtils (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util
+

Class UnitsFormatterUtils

+
+
java.lang.Object +
org.neuroml.model.util.UnitsFormatterUtils
+
+
+
+
public class UnitsFormatterUtils +extends Object
+
+
Author:
+
matteocantarelli
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      UnitsFormatterUtils

      +
      public UnitsFormatterUtils()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      getFormattedUnits

      +
      public static String getFormattedUnits(String unformattedUnit)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/CellUtils.html b/org/neuroml/model/util/class-use/CellUtils.html new file mode 100644 index 00000000..594ee0c1 --- /dev/null +++ b/org/neuroml/model/util/class-use/CellUtils.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.CellUtils (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.CellUtils

+
+No usage of org.neuroml.model.util.CellUtils
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/NeuroML2Validator.html b/org/neuroml/model/util/class-use/NeuroML2Validator.html new file mode 100644 index 00000000..3eec9515 --- /dev/null +++ b/org/neuroml/model/util/class-use/NeuroML2Validator.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.NeuroML2Validator (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.NeuroML2Validator

+
+No usage of org.neuroml.model.util.NeuroML2Validator
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/NeuroMLConverter.html b/org/neuroml/model/util/class-use/NeuroMLConverter.html new file mode 100644 index 00000000..280152f9 --- /dev/null +++ b/org/neuroml/model/util/class-use/NeuroMLConverter.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.NeuroMLConverter (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.NeuroMLConverter

+
+No usage of org.neuroml.model.util.NeuroMLConverter
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/NeuroMLElements.html b/org/neuroml/model/util/class-use/NeuroMLElements.html new file mode 100644 index 00000000..031e4919 --- /dev/null +++ b/org/neuroml/model/util/class-use/NeuroMLElements.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.NeuroMLElements (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.NeuroMLElements

+
+No usage of org.neuroml.model.util.NeuroMLElements
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/NeuroMLException.html b/org/neuroml/model/util/class-use/NeuroMLException.html new file mode 100644 index 00000000..2dca64d6 --- /dev/null +++ b/org/neuroml/model/util/class-use/NeuroMLException.html @@ -0,0 +1,265 @@ + + + + +Uses of Class org.neuroml.model.util.NeuroMLException (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.NeuroMLException

+
+
Packages that use NeuroMLException
+
+
Package
+
Description
+
org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/NeuroMLNamespacePrefixMapper.html b/org/neuroml/model/util/class-use/NeuroMLNamespacePrefixMapper.html new file mode 100644 index 00000000..672d5d9b --- /dev/null +++ b/org/neuroml/model/util/class-use/NeuroMLNamespacePrefixMapper.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.NeuroMLNamespacePrefixMapper (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.NeuroMLNamespacePrefixMapper

+
+No usage of org.neuroml.model.util.NeuroMLNamespacePrefixMapper
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/StandardTest.LEVEL.html b/org/neuroml/model/util/class-use/StandardTest.LEVEL.html new file mode 100644 index 00000000..b151051f --- /dev/null +++ b/org/neuroml/model/util/class-use/StandardTest.LEVEL.html @@ -0,0 +1,115 @@ + + + + +Uses of Enum org.neuroml.model.util.StandardTest.LEVEL (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Enum
org.neuroml.model.util.StandardTest.LEVEL

+
+
Packages that use StandardTest.LEVEL
+
+
Package
+
Description
+
org.neuroml.model.util
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/StandardTest.html b/org/neuroml/model/util/class-use/StandardTest.html new file mode 100644 index 00000000..294aec94 --- /dev/null +++ b/org/neuroml/model/util/class-use/StandardTest.html @@ -0,0 +1,144 @@ + + + + +Uses of Class org.neuroml.model.util.StandardTest (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.StandardTest

+
+
Packages that use StandardTest
+
+
Package
+
Description
+
org.neuroml.model.util
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/class-use/UnitsFormatterUtils.html b/org/neuroml/model/util/class-use/UnitsFormatterUtils.html new file mode 100644 index 00000000..16248b03 --- /dev/null +++ b/org/neuroml/model/util/class-use/UnitsFormatterUtils.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.UnitsFormatterUtils (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.UnitsFormatterUtils

+
+No usage of org.neuroml.model.util.UnitsFormatterUtils
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/Hdf5Exception.html b/org/neuroml/model/util/hdf5/Hdf5Exception.html new file mode 100644 index 00000000..2ba5a9c1 --- /dev/null +++ b/org/neuroml/model/util/hdf5/Hdf5Exception.html @@ -0,0 +1,161 @@ + + + + +Hdf5Exception (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util.hdf5
+

Class Hdf5Exception

+
+
java.lang.Object +
java.lang.Throwable +
java.lang.Exception +
org.neuroml.model.util.hdf5.Hdf5Exception
+
+
+
+
+
+
All Implemented Interfaces:
+
Serializable
+
+
+
public class Hdf5Exception +extends Exception
+
+
See Also:
+
+ +
+
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Hdf5Exception

      +
      public Hdf5Exception(String message)
      +
      +
      • +
    • +
      +

      Hdf5Exception

      +
      public Hdf5Exception(String comment, + Throwable t)
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/Hdf5Utils.html b/org/neuroml/model/util/hdf5/Hdf5Utils.html new file mode 100644 index 00000000..3b9eb395 --- /dev/null +++ b/org/neuroml/model/util/hdf5/Hdf5Utils.html @@ -0,0 +1,369 @@ + + + + +Hdf5Utils (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util.hdf5
+

Class Hdf5Utils

+
+
java.lang.Object +
org.neuroml.model.util.hdf5.Hdf5Utils
+
+
+
+
public class Hdf5Utils +extends Object
+
+
+ +
+
+
    + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      Hdf5Utils

      +
      public Hdf5Utils()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    +
      +
    • +
      +

      setVerbose

      +
      public static void setVerbose(boolean v)
      +
      +
      • +
    • +
      +

      getSimpleAttr

      +
      public static ncsa.hdf.object.Attribute getSimpleAttr(String name, + String value, + ncsa.hdf.object.h5.H5File h5File) + throws Exception
      +
      +
      Throws:
      +
      Exception
      +
      +
      +
      • +
    • +
      +

      addStringAttribute

      +
      public static void addStringAttribute(ncsa.hdf.object.Group group, + String name, + String value, + ncsa.hdf.object.h5.H5File h5File) + throws Exception
      +
      +
      Throws:
      +
      Exception
      +
      +
      +
      • +
    • +
      +

      createH5file

      +
      public static ncsa.hdf.object.h5.H5File createH5file(File file) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      openH5file

      +
      public static ncsa.hdf.object.h5.H5File openH5file(File file) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      open

      +
      public static void open(ncsa.hdf.object.h5.H5File h5File) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      openForRead

      +
      public static ncsa.hdf.object.h5.H5File openForRead(File f) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      close

      +
      public static void close(ncsa.hdf.object.h5.H5File h5File) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      getFirstStringValAttr

      +
      public static String getFirstStringValAttr(ArrayList<ncsa.hdf.object.Attribute> attrs, + String attrName)
      +
      +
      • +
    • +
      +

      parseGroupForAttributes

      +
      public static ArrayList<ncsa.hdf.object.Attribute> parseGroupForAttributes(ncsa.hdf.object.Group g) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      parseDatasetForAttributes

      +
      public static ArrayList<ncsa.hdf.object.Attribute> parseDatasetForAttributes(ncsa.hdf.object.Dataset d) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      getRootGroup

      +
      public static ncsa.hdf.object.Group getRootGroup(ncsa.hdf.object.h5.H5File h5File) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      parseAttribute

      +
      public static String parseAttribute(ncsa.hdf.object.Attribute a, + String indent, + Properties p, + boolean returnOnlyValueString)
      +
      +
      • +
    • +
      +

      parse2Ddataset

      +
      public static float[][] parse2Ddataset(ncsa.hdf.object.Dataset d) + throws Hdf5Exception
      +
      +
      Throws:
      +
      Hdf5Exception
      +
      +
      +
      • +
    • +
      +

      main

      +
      public static void main(String[] args) + throws IOException, +Hdf5Exception
      +
      +
      Throws:
      +
      IOException
      +
      Hdf5Exception
      +
      +
      +
      • +
    +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/NetworkHelper.html b/org/neuroml/model/util/hdf5/NetworkHelper.html new file mode 100644 index 00000000..645cc9b5 --- /dev/null +++ b/org/neuroml/model/util/hdf5/NetworkHelper.html @@ -0,0 +1,350 @@ + + + + +NetworkHelper (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util.hdf5
+

Class NetworkHelper

+
+
java.lang.Object +
org.neuroml.model.util.hdf5.NetworkHelper
+
+
+
+
public class NetworkHelper +extends Object
+
+
+ +
+
+ +
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/NeuroMLHDF5Reader.html b/org/neuroml/model/util/hdf5/NeuroMLHDF5Reader.html new file mode 100644 index 00000000..8c79c176 --- /dev/null +++ b/org/neuroml/model/util/hdf5/NeuroMLHDF5Reader.html @@ -0,0 +1,342 @@ + + + + +NeuroMLHDF5Reader (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util.hdf5
+

Class NeuroMLHDF5Reader

+
+
java.lang.Object +
org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
+
+
+
public class NeuroMLHDF5Reader +extends Object
+
+
+ +
+
+ +
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/NeuroMLHDF5Writer.html b/org/neuroml/model/util/hdf5/NeuroMLHDF5Writer.html new file mode 100644 index 00000000..1b7889c9 --- /dev/null +++ b/org/neuroml/model/util/hdf5/NeuroMLHDF5Writer.html @@ -0,0 +1,268 @@ + + + + +NeuroMLHDF5Writer (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+ +
+
Package org.neuroml.model.util.hdf5
+

Class NeuroMLHDF5Writer

+
+
java.lang.Object +
org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
+
+
+
public class NeuroMLHDF5Writer +extends Object
+
+
+ +
+
+
    + +
  • +
    +

    Field Details

    +
      +
    • +
      +

      NEUROML_TOP_LEVEL_CONTENT

      +
      public static String NEUROML_TOP_LEVEL_CONTENT
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Constructor Details

    +
      +
    • +
      +

      NeuroMLHDF5Writer

      +
      public NeuroMLHDF5Writer()
      +
      +
      • +
    +
    +
    • + +
  • +
    +

    Method Details

    + +
    +
    • +
+
+ +
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/class-use/Hdf5Exception.html b/org/neuroml/model/util/hdf5/class-use/Hdf5Exception.html new file mode 100644 index 00000000..f877007d --- /dev/null +++ b/org/neuroml/model/util/hdf5/class-use/Hdf5Exception.html @@ -0,0 +1,161 @@ + + + + +Uses of Class org.neuroml.model.util.hdf5.Hdf5Exception (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.hdf5.Hdf5Exception

+
+
Packages that use Hdf5Exception
+
+
Package
+
Description
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/class-use/Hdf5Utils.html b/org/neuroml/model/util/hdf5/class-use/Hdf5Utils.html new file mode 100644 index 00000000..ac0be39e --- /dev/null +++ b/org/neuroml/model/util/hdf5/class-use/Hdf5Utils.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.hdf5.Hdf5Utils (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.hdf5.Hdf5Utils

+
+No usage of org.neuroml.model.util.hdf5.Hdf5Utils
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/class-use/NetworkHelper.html b/org/neuroml/model/util/hdf5/class-use/NetworkHelper.html new file mode 100644 index 00000000..795ad1ea --- /dev/null +++ b/org/neuroml/model/util/hdf5/class-use/NetworkHelper.html @@ -0,0 +1,114 @@ + + + + +Uses of Class org.neuroml.model.util.hdf5.NetworkHelper (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.hdf5.NetworkHelper

+
+
Packages that use NetworkHelper
+
+
Package
+
Description
+
org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/class-use/NeuroMLHDF5Reader.html b/org/neuroml/model/util/hdf5/class-use/NeuroMLHDF5Reader.html new file mode 100644 index 00000000..efc90114 --- /dev/null +++ b/org/neuroml/model/util/hdf5/class-use/NeuroMLHDF5Reader.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.hdf5.NeuroMLHDF5Reader (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.hdf5.NeuroMLHDF5Reader

+
+No usage of org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/class-use/NeuroMLHDF5Writer.html b/org/neuroml/model/util/hdf5/class-use/NeuroMLHDF5Writer.html new file mode 100644 index 00000000..2eb43662 --- /dev/null +++ b/org/neuroml/model/util/hdf5/class-use/NeuroMLHDF5Writer.html @@ -0,0 +1,62 @@ + + + + +Uses of Class org.neuroml.model.util.hdf5.NeuroMLHDF5Writer (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Class
org.neuroml.model.util.hdf5.NeuroMLHDF5Writer

+
+No usage of org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/package-summary.html b/org/neuroml/model/util/hdf5/package-summary.html new file mode 100644 index 00000000..76832319 --- /dev/null +++ b/org/neuroml/model/util/hdf5/package-summary.html @@ -0,0 +1,112 @@ + + + + +org.neuroml.model.util.hdf5 (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Package org.neuroml.model.util.hdf5

+
+
+
package org.neuroml.model.util.hdf5
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/package-tree.html b/org/neuroml/model/util/hdf5/package-tree.html new file mode 100644 index 00000000..c7f1a420 --- /dev/null +++ b/org/neuroml/model/util/hdf5/package-tree.html @@ -0,0 +1,88 @@ + + + + +org.neuroml.model.util.hdf5 Class Hierarchy (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Hierarchy For Package org.neuroml.model.util.hdf5

+Package Hierarchies: + +
+
+

Class Hierarchy

+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/hdf5/package-use.html b/org/neuroml/model/util/hdf5/package-use.html new file mode 100644 index 00000000..976af0fc --- /dev/null +++ b/org/neuroml/model/util/hdf5/package-use.html @@ -0,0 +1,99 @@ + + + + +Uses of Package org.neuroml.model.util.hdf5 (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Package
org.neuroml.model.util.hdf5

+
+
Packages that use org.neuroml.model.util.hdf5
+
+
Package
+
Description
+
org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/package-summary.html b/org/neuroml/model/util/package-summary.html new file mode 100644 index 00000000..e0882aed --- /dev/null +++ b/org/neuroml/model/util/package-summary.html @@ -0,0 +1,122 @@ + + + + +org.neuroml.model.util (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Package org.neuroml.model.util

+
+
+
package org.neuroml.model.util
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/package-tree.html b/org/neuroml/model/util/package-tree.html new file mode 100644 index 00000000..00169c42 --- /dev/null +++ b/org/neuroml/model/util/package-tree.html @@ -0,0 +1,105 @@ + + + + +org.neuroml.model.util Class Hierarchy (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Hierarchy For Package org.neuroml.model.util

+Package Hierarchies: + +
+
+

Class Hierarchy

+ +
+
+

Enum Hierarchy

+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/org/neuroml/model/util/package-use.html b/org/neuroml/model/util/package-use.html new file mode 100644 index 00000000..7a7dcf2e --- /dev/null +++ b/org/neuroml/model/util/package-use.html @@ -0,0 +1,101 @@ + + + + +Uses of Package org.neuroml.model.util (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Uses of Package
org.neuroml.model.util

+
+
Packages that use org.neuroml.model.util
+
+
Package
+
Description
+
org.neuroml.model.util
+
 
+
org.neuroml.model.util.hdf5
+
 
+
+
+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
+ + diff --git a/overview-summary.html b/overview-summary.html new file mode 100644 index 00000000..2332ea1f --- /dev/null +++ b/overview-summary.html @@ -0,0 +1,26 @@ + + + + +org.neuroml.model 1.9.1 API + + + + + + + + + + + +
+ +

index.html

+
+ + diff --git a/overview-tree.html b/overview-tree.html new file mode 100644 index 00000000..cb54d446 --- /dev/null +++ b/overview-tree.html @@ -0,0 +1,444 @@ + + + + +Class Hierarchy (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
+ +
+
+
+

Hierarchy For All Packages

+Package Hierarchies: + +
+
+

Class Hierarchy

+
    +
  • java.lang.Object +
      +
    • org.neuroml.model.BaseWithoutId (implements org.jvnet.jaxb2_commons.lang.ToString2) +
        +
      • org.neuroml.model.Annotation (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Base (implements org.jvnet.jaxb2_commons.lang.ToString2) +
          +
        • org.neuroml.model.BaseProjection (implements org.jvnet.jaxb2_commons.lang.ToString2) +
            +
          • org.neuroml.model.ContinuousProjection (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.ElectricalProjection (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.Projection (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          +
          • +
        • org.neuroml.model.CellSet (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensity (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
          • +
        • org.neuroml.model.ChannelDensityGHK (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensityGHK2 (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensityNernst (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
          • +
        • org.neuroml.model.ChannelDensityNonUniform (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensityNonUniformGHK (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelDensityNonUniformNernst (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ChannelPopulation (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ClosedState (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ExtracellularProperties (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ExtracellularPropertiesLocal (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ForwardTransition (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateFractional (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateFractionalSubgate (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHInstantaneous (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHRates (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHRatesInf (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHRatesTau (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHRatesTauInf (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHTauInf (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateHHUndetermined (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.GateKS (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.InhomogeneousParameter (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.InputList (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.OpenState (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ReactionScheme (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Region (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.ReverseTransition (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.SegmentGroup (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Space (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Species (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Standalone (implements org.jvnet.jaxb2_commons.lang.ToString2) +
            +
          • org.neuroml.model.BaseCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
              +
            • org.neuroml.model.BaseCellMembPotCap (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.AdExIaFCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.HindmarshRose1984Cell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.Izhikevich2007Cell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.BasePyNNCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.BasePyNNIaFCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                  +
                • org.neuroml.model.BasePyNNIaFCondCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                    +
                  • org.neuroml.model.EIFCondExpIsfaIsta (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
                    • +
                  • org.neuroml.model.IFCondAlpha (implements org.jvnet.jaxb2_commons.lang.ToString2)
                    • +
                  • org.neuroml.model.IFCondExp (implements org.jvnet.jaxb2_commons.lang.ToString2)
                    • +
                  +
                  • +
                • org.neuroml.model.IFCurrAlpha (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                • org.neuroml.model.IFCurrExp (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                +
                • +
              • org.neuroml.model.HHCondExp (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.Cell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.Cell2CaPools (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.FitzHughNagumo1969Cell (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.FitzHughNagumoCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.IafCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.IafRefCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.IafTauCell (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.IafTauRefCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.IzhikevichCell (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.PinskyRinzelCA3Cell (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            +
            • +
          • org.neuroml.model.BaseSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) +
              +
            • org.neuroml.model.BaseCurrentBasedSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
              • +
            • org.neuroml.model.BasePynnSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.AlphaCondSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.AlphaCurrSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.ExpCondSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.ExpCurrSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.BaseVoltageDepSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.BaseConductanceBasedSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                  +
                • org.neuroml.model.AlphaSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                • org.neuroml.model.ExpOneSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                • org.neuroml.model.ExpTwoSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
                  • +
                +
                • +
              • org.neuroml.model.BaseConductanceBasedSynapseTwo (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                  +
                • org.neuroml.model.ExpThreeSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                  • +
                +
                • +
              • org.neuroml.model.DoubleSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            • org.neuroml.model.GapJunction (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.GradedSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.LinearGradedSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            • org.neuroml.model.SilentSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
              • +
            +
            • +
          • org.neuroml.model.BiophysicalProperties (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.BiophysicalProperties2CaPools (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.CompoundInput (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.CompoundInputDL (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.DecayingPoolConcentrationModel (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
            • +
          • org.neuroml.model.FixedFactorConcentrationModel (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.IonChannelKS (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.IonChannelScalable (implements org.jvnet.jaxb2_commons.lang.ToString2) +
              +
            • org.neuroml.model.IonChannel (implements org.jvnet.jaxb2_commons.lang.ToString2) +
                +
              • org.neuroml.model.IonChannelHH (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              • org.neuroml.model.IonChannelVShift (implements org.jvnet.jaxb2_commons.lang.ToString2)
                • +
              +
              • +
            +
            • +
          • org.neuroml.model.Morphology (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.Network (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.NeuroMLDocument (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.PoissonFiringSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.Population (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.PulseGenerator (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.PulseGeneratorDL (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.RampGenerator (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.RampGeneratorDL (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SineGenerator (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SineGeneratorDL (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SpikeArray (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SpikeGenerator (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SpikeGeneratorPoisson (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
            • +
          • org.neuroml.model.SpikeGeneratorRandom (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.SpikeSourcePoisson (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.TimedSynapticInput (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.TransientPoissonFiringSynapse (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.VoltageClamp (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          • org.neuroml.model.VoltageClampTriple (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          +
          • +
        • org.neuroml.model.TauInfTransition (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        +
        • +
      • org.neuroml.model.BaseNonNegativeIntegerId (implements org.jvnet.jaxb2_commons.lang.ToString2) +
          +
        • org.neuroml.model.BaseConnection (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
          • +
        • org.neuroml.model.Input (implements org.jvnet.jaxb2_commons.lang.ToString2) +
            +
          • org.neuroml.model.InputW (implements org.jvnet.jaxb2_commons.lang.ToString2)
            • +
          +
          • +
        • org.neuroml.model.Segment (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Spike (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        +
        • +
      • org.neuroml.model.BlockMechanism (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Constant (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.DistalDetails (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.ExplicitInput (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Exposure (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.GridLayout (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.HHRate (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.HHTime (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.HHVariable (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Include (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.InhomogeneousValue (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.InitMembPotential (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Instance (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.IntracellularProperties (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
        • +
      • org.neuroml.model.Layout (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Location (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Member (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.MembraneProperties (implements org.jvnet.jaxb2_commons.lang.ToString2) + +
        • +
      • org.neuroml.model.NamedDimensionalType (implements org.jvnet.jaxb2_commons.lang.ToString2) +
          +
        • org.neuroml.model.DerivedParameter (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.LEMSProperty (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Parameter (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.Requirement (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        +
        • +
      • org.neuroml.model.NamedDimensionalVariable (implements org.jvnet.jaxb2_commons.lang.ToString2) +
          +
        • org.neuroml.model.ConditionalDerivedVariable (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.DerivedVariable (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        • org.neuroml.model.StateVariable (implements org.jvnet.jaxb2_commons.lang.ToString2)
          • +
        +
        • +
      • org.neuroml.model.Path (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.PlasticityMechanism (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Point3DWithDiam (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Property (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.ProximalDetails (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Q10ConductanceScaling (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.RandomLayout (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.Resistivity (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SegmentEndPoint (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SegmentParent (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SpaceStructure (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SpecificCapacitance (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SpikeThresh (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SubTree (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.SynapticConnection (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      • org.neuroml.model.UnstructuredLayout (implements org.jvnet.jaxb2_commons.lang.ToString2)
        • +
      +
      • +
    • org.neuroml.model.Case (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.util.CellUtils
      • +
    • org.neuroml.model.ComponentType (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.Dynamics (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.EventOut (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.util.hdf5.Hdf5Utils
      • +
    • org.neuroml.model.IncludeType (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.InstanceRequirement (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.util.hdf5.NetworkHelper
      • +
    • org.neuroml.model.util.NeuroML2Validator
      • +
    • org.neuroml.model.util.NeuroMLConverter
      • +
    • org.neuroml.model.util.NeuroMLElements
      • +
    • org.neuroml.model.util.hdf5.NeuroMLHDF5Reader
      • +
    • org.neuroml.model.util.hdf5.NeuroMLHDF5Writer
      • +
    • org.neuroml.model.util.NeuroMLNamespacePrefixMapper
      • +
    • org.neuroml.model.ObjectFactory
      • +
    • org.neuroml.model.OnCondition (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.OnEntry (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.OnEvent (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.OnStart (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.Q10Settings (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.Regime (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.util.StandardTest
      • +
    • org.neuroml.model.StateAssignment (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • java.lang.Throwable (implements java.io.Serializable) + +
      • +
    • org.neuroml.model.TimeDerivative (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.Transition (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • org.neuroml.model.util.UnitsFormatterUtils
      • +
    • org.neuroml.model.VariableParameter (implements org.jvnet.jaxb2_commons.lang.ToString2)
      • +
    • javax.xml.bind.annotation.adapters.XmlAdapter<ValueType,BoundType> + +
      • +
    +
    • +
+
+
+

Enum Hierarchy

+ +
+
+
+
+

Copyright NeuroML Contributors 2022

+
+
+
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    ").text(e.label)).appendTo(t)},_move:function(t,e){if(this.menu.element.is(":visible"))return this.menu.isFirstItem()&&/^previous/.test(t)||this.menu.isLastItem()&&/^next/.test(t)?(this.isMultiLine||this._value(this.term),void this.menu.blur()):void this.menu[t](e);this.search(null,e)},widget:function(){return this.menu.element},_value:function(){return this.valueMethod.apply(this.element,arguments)},_keyEvent:function(t,e){this.isMultiLine&&!this.menu.element.is(":visible")||(this._move(t,e),e.preventDefault())},_isContentEditable:function(t){if(!t.length)return!1;var e=t.prop("contentEditable");return"inherit"===e?this._isContentEditable(t.parent()):"true"===e}}),x.extend(x.ui.autocomplete,{escapeRegex:function(t){return t.replace(/[\-\[\]{}()*+?.,\\\^$|#\s]/g,"\\$&")},filter:function(t,e){var i=new RegExp(x.ui.autocomplete.escapeRegex(e),"i");return x.grep(t,function(t){return i.test(t.label||t.value||t)})}}),x.widget("ui.autocomplete",x.ui.autocomplete,{options:{messages:{noResults:"No search results.",results:function(t){return t+(1").text(e))},100))}});x.ui.autocomplete}); \ No newline at end of file diff --git a/script.js b/script.js new file mode 100644 index 00000000..864989cf --- /dev/null +++ b/script.js @@ -0,0 +1,132 @@ +/* + * Copyright (c) 2013, 2020, Oracle and/or its affiliates. All rights reserved. + * DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER. + * + * This code is free software; you can redistribute it and/or modify it + * under the terms of the GNU General Public License version 2 only, as + * published by the Free Software Foundation. Oracle designates this + * particular file as subject to the "Classpath" exception as provided + * by Oracle in the LICENSE file that accompanied this code. + * + * This code is distributed in the hope that it will be useful, but WITHOUT + * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + * FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License + * version 2 for more details (a copy is included in the LICENSE file that + * accompanied this code). + * + * You should have received a copy of the GNU General Public License version + * 2 along with this work; if not, write to the Free Software Foundation, + * Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA. + * + * Please contact Oracle, 500 Oracle Parkway, Redwood Shores, CA 94065 USA + * or visit www.oracle.com if you need additional information or have any + * questions. + */ + +var moduleSearchIndex; +var packageSearchIndex; +var typeSearchIndex; +var memberSearchIndex; +var tagSearchIndex; +function loadScripts(doc, tag) { + createElem(doc, tag, 'search.js'); + + createElem(doc, tag, 'module-search-index.js'); + createElem(doc, tag, 'package-search-index.js'); + createElem(doc, tag, 'type-search-index.js'); + createElem(doc, tag, 'member-search-index.js'); + createElem(doc, tag, 'tag-search-index.js'); +} + +function createElem(doc, tag, path) { + var script = doc.createElement(tag); + var scriptElement = doc.getElementsByTagName(tag)[0]; + script.src = pathtoroot + path; + scriptElement.parentNode.insertBefore(script, scriptElement); +} + +function show(tableId, selected, columns) { + if (tableId !== selected) { + document.querySelectorAll('div.' + tableId + ':not(.' + selected + ')') + .forEach(function(elem) { + elem.style.display = 'none'; + }); + } + document.querySelectorAll('div.' + selected) + .forEach(function(elem, index) { + elem.style.display = ''; + var isEvenRow = index % (columns * 2) < columns; + elem.classList.remove(isEvenRow ? oddRowColor : evenRowColor); + elem.classList.add(isEvenRow ? evenRowColor : oddRowColor); + }); + updateTabs(tableId, selected); +} + +function updateTabs(tableId, selected) { + document.querySelector('div#' + tableId +' .summary-table') + .setAttribute('aria-labelledby', selected); + document.querySelectorAll('button[id^="' + tableId + '"]') + .forEach(function(tab, index) { + if (selected === tab.id || (tableId === selected && index === 0)) { + tab.className = activeTableTab; + tab.setAttribute('aria-selected', true); + tab.setAttribute('tabindex',0); + } else { + tab.className = tableTab; + tab.setAttribute('aria-selected', false); + tab.setAttribute('tabindex',-1); + } + }); +} + +function switchTab(e) { + var selected = document.querySelector('[aria-selected=true]'); + if (selected) { + if ((e.keyCode === 37 || e.keyCode === 38) && selected.previousSibling) { + // left or up arrow key pressed: move focus to previous tab + selected.previousSibling.click(); + selected.previousSibling.focus(); + e.preventDefault(); + } else if ((e.keyCode === 39 || e.keyCode === 40) && selected.nextSibling) { + // right or down arrow key pressed: move focus to next tab + selected.nextSibling.click(); + selected.nextSibling.focus(); + e.preventDefault(); + } + } +} + +var updateSearchResults = function() {}; + +function indexFilesLoaded() { + return moduleSearchIndex + && packageSearchIndex + && typeSearchIndex + && memberSearchIndex + && tagSearchIndex; +} + +// Workaround for scroll position not being included in browser history (8249133) +document.addEventListener("DOMContentLoaded", function(e) { + var contentDiv = document.querySelector("div.flex-content"); + window.addEventListener("popstate", function(e) { + if (e.state !== null) { + contentDiv.scrollTop = e.state; + } + }); + window.addEventListener("hashchange", function(e) { + history.replaceState(contentDiv.scrollTop, document.title); + }); + contentDiv.addEventListener("scroll", function(e) { + var timeoutID; + if (!timeoutID) { + timeoutID = setTimeout(function() { + history.replaceState(contentDiv.scrollTop, document.title); + timeoutID = null; + }, 100); + } + }); + if (!location.hash) { + history.replaceState(contentDiv.scrollTop, document.title); + } +}); diff --git a/search.js b/search.js new file mode 100644 index 00000000..2246cdd0 --- /dev/null +++ b/search.js @@ -0,0 +1,354 @@ +/* + * Copyright (c) 2015, 2020, Oracle and/or its affiliates. All rights reserved. + * DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS FILE HEADER. + * + * This code is free software; you can redistribute it and/or modify it + * under the terms of the GNU General Public License version 2 only, as + * published by the Free Software Foundation. Oracle designates this + * particular file as subject to the "Classpath" exception as provided + * by Oracle in the LICENSE file that accompanied this code. + * + * This code is distributed in the hope that it will be useful, but WITHOUT + * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + * FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License + * version 2 for more details (a copy is included in the LICENSE file that + * accompanied this code). + * + * You should have received a copy of the GNU General Public License version + * 2 along with this work; if not, write to the Free Software Foundation, + * Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA. + * + * Please contact Oracle, 500 Oracle Parkway, Redwood Shores, CA 94065 USA + * or visit www.oracle.com if you need additional information or have any + * questions. + */ + +var noResult = {l: "No results found"}; +var loading = {l: "Loading search index..."}; +var catModules = "Modules"; +var catPackages = "Packages"; +var catTypes = "Types"; +var catMembers = "Members"; +var catSearchTags = "Search Tags"; +var highlight = "$&"; +var searchPattern = ""; +var fallbackPattern = ""; +var RANKING_THRESHOLD = 2; +var NO_MATCH = 0xffff; +var MIN_RESULTS = 3; +var MAX_RESULTS = 500; +var UNNAMED = ""; +function escapeHtml(str) { + return str.replace(//g, ">"); +} +function getHighlightedText(item, matcher, fallbackMatcher) { + var escapedItem = escapeHtml(item); + var highlighted = escapedItem.replace(matcher, highlight); + if (highlighted === escapedItem) { + highlighted = escapedItem.replace(fallbackMatcher, highlight) + } + return highlighted; +} +function getURLPrefix(ui) { + var urlPrefix=""; + var slash = "/"; + if (ui.item.category === catModules) { + return ui.item.l + slash; + } else if (ui.item.category === catPackages && ui.item.m) { + return ui.item.m + slash; + } else if (ui.item.category === catTypes || ui.item.category === catMembers) { + if (ui.item.m) { + urlPrefix = ui.item.m + slash; + } else { + $.each(packageSearchIndex, function(index, item) { + if (item.m && ui.item.p === item.l) { + urlPrefix = item.m + slash; + } + }); + } + } + return urlPrefix; +} +function createSearchPattern(term) { + var pattern = ""; + var isWordToken = false; + term.replace(/,\s*/g, ", ").trim().split(/\s+/).forEach(function(w, index) { + if (index > 0) { + // whitespace between identifiers is significant + pattern += (isWordToken && /^\w/.test(w)) ? "\\s+" : "\\s*"; + } + var tokens = w.split(/(?=[A-Z,.()<>[\/])/); + for (var i = 0; i < tokens.length; i++) { + var s = tokens[i]; + if (s === "") { + continue; + } + pattern += $.ui.autocomplete.escapeRegex(s); + isWordToken = /\w$/.test(s); + if (isWordToken) { + pattern += "([a-z0-9_$<>\\[\\]]*?)"; + } + } + }); + return pattern; +} +function createMatcher(pattern, flags) { + var isCamelCase = /[A-Z]/.test(pattern); + return new RegExp(pattern, flags + (isCamelCase ? "" : "i")); +} +var watermark = 'Search'; +$(function() { + var search = $("#search-input"); + var reset = $("#reset-button"); + search.val(''); + search.prop("disabled", false); + reset.prop("disabled", false); + search.val(watermark).addClass('watermark'); + search.blur(function() { + if ($(this).val().length === 0) { + $(this).val(watermark).addClass('watermark'); + } + }); + search.on('click keydown paste', function() { + if ($(this).val() === watermark) { + $(this).val('').removeClass('watermark'); + } + }); + reset.click(function() { + search.val('').focus(); + }); + search.focus()[0].setSelectionRange(0, 0); +}); +$.widget("custom.catcomplete", $.ui.autocomplete, { + _create: function() { + this._super(); + this.widget().menu("option", "items", "> :not(.ui-autocomplete-category)"); + }, + _renderMenu: function(ul, items) { + var rMenu = this; + var currentCategory = ""; + rMenu.menu.bindings = $(); + $.each(items, function(index, item) { + var li; + if (item.category && item.category !== currentCategory) { + ul.append("
  • " + item.category + "
    • "); + currentCategory = item.category; + } + li = rMenu._renderItemData(ul, item); + if (item.category) { + li.attr("aria-label", item.category + " : " + item.l); + li.attr("class", "result-item"); + } else { + li.attr("aria-label", item.l); + li.attr("class", "result-item"); + } + }); + }, + _renderItem: function(ul, item) { + var label = ""; + var matcher = createMatcher(escapeHtml(searchPattern), "g"); + var fallbackMatcher = new RegExp(fallbackPattern, "gi") + if (item.category === catModules) { + label = getHighlightedText(item.l, matcher, fallbackMatcher); + } else if (item.category === catPackages) { + label = getHighlightedText(item.l, matcher, fallbackMatcher); + } else if (item.category === catTypes) { + label = (item.p && item.p !== UNNAMED) + ? getHighlightedText(item.p + "." + item.l, matcher, fallbackMatcher) + : getHighlightedText(item.l, matcher, fallbackMatcher); + } else if (item.category === catMembers) { + label = (item.p && item.p !== UNNAMED) + ? getHighlightedText(item.p + "." + item.c + "." + item.l, matcher, fallbackMatcher) + : getHighlightedText(item.c + "." + item.l, matcher, fallbackMatcher); + } else if (item.category === catSearchTags) { + label = getHighlightedText(item.l, matcher, fallbackMatcher); + } else { + label = item.l; + } + var li = $("
  • ").appendTo(ul); + var div = $("
    ").appendTo(li); + if (item.category === catSearchTags && item.h) { + if (item.d) { + div.html(label + " (" + item.h + ")
    " + + item.d + "
    "); + } else { + div.html(label + " (" + item.h + ")"); + } + } else { + if (item.m) { + div.html(item.m + "/" + label); + } else { + div.html(label); + } + } + return li; + } +}); +function rankMatch(match, category) { + if (!match) { + return NO_MATCH; + } + var index = match.index; + var input = match.input; + var leftBoundaryMatch = 2; + var periferalMatch = 0; + // make sure match is anchored on a left word boundary + if (index === 0 || /\W/.test(input[index - 1]) || "_" === input[index]) { + leftBoundaryMatch = 0; + } else if ("_" === input[index - 1] || (input[index] === input[index].toUpperCase() && !/^[A-Z0-9_$]+$/.test(input))) { + leftBoundaryMatch = 1; + } + var matchEnd = index + match[0].length; + var leftParen = input.indexOf("("); + var endOfName = leftParen > -1 ? leftParen : input.length; + // exclude peripheral matches + if (category !== catModules && category !== catSearchTags) { + var delim = category === catPackages ? "/" : "."; + if (leftParen > -1 && leftParen < index) { + periferalMatch += 2; + } else if (input.lastIndexOf(delim, endOfName) >= matchEnd) { + periferalMatch += 2; + } + } + var delta = match[0].length === endOfName ? 0 : 1; // rank full match higher than partial match + for (var i = 1; i < match.length; i++) { + // lower ranking if parts of the name are missing + if (match[i]) + delta += match[i].length; + } + if (category === catTypes) { + // lower ranking if a type name contains unmatched camel-case parts + if (/[A-Z]/.test(input.substring(matchEnd))) + delta += 5; + if (/[A-Z]/.test(input.substring(0, index))) + delta += 5; + } + return leftBoundaryMatch + periferalMatch + (delta / 200); + +} +function doSearch(request, response) { + var result = []; + searchPattern = createSearchPattern(request.term); + fallbackPattern = createSearchPattern(request.term.toLowerCase()); + if (searchPattern === "") { + return this.close(); + } + var camelCaseMatcher = createMatcher(searchPattern, ""); + var fallbackMatcher = new RegExp(fallbackPattern, "i"); + + function searchIndexWithMatcher(indexArray, matcher, category, nameFunc) { + if (indexArray) { + var newResults = []; + $.each(indexArray, function (i, item) { + item.category = category; + var ranking = rankMatch(matcher.exec(nameFunc(item)), category); + if (ranking < RANKING_THRESHOLD) { + newResults.push({ranking: ranking, item: item}); + } + return newResults.length <= MAX_RESULTS; + }); + return newResults.sort(function(e1, e2) { + return e1.ranking - e2.ranking; + }).map(function(e) { + return e.item; + }); + } + return []; + } + function searchIndex(indexArray, category, nameFunc) { + var primaryResults = searchIndexWithMatcher(indexArray, camelCaseMatcher, category, nameFunc); + result = result.concat(primaryResults); + if (primaryResults.length <= MIN_RESULTS && !camelCaseMatcher.ignoreCase) { + var secondaryResults = searchIndexWithMatcher(indexArray, fallbackMatcher, category, nameFunc); + result = result.concat(secondaryResults.filter(function (item) { + return primaryResults.indexOf(item) === -1; + })); + } + } + + searchIndex(moduleSearchIndex, catModules, function(item) { return item.l; }); + searchIndex(packageSearchIndex, catPackages, function(item) { + return (item.m && request.term.indexOf("/") > -1) + ? (item.m + "/" + item.l) : item.l; + }); + searchIndex(typeSearchIndex, catTypes, function(item) { + return request.term.indexOf(".") > -1 ? item.p + "." + item.l : item.l; + }); + searchIndex(memberSearchIndex, catMembers, function(item) { + return request.term.indexOf(".") > -1 + ? item.p + "." + item.c + "." + item.l : item.l; + }); + searchIndex(tagSearchIndex, catSearchTags, function(item) { return item.l; }); + + if (!indexFilesLoaded()) { + updateSearchResults = function() { + doSearch(request, response); + } + result.unshift(loading); + } else { + updateSearchResults = function() {}; + } + response(result); +} +$(function() { + $("#search-input").catcomplete({ + minLength: 1, + delay: 300, + source: doSearch, + response: function(event, ui) { + if (!ui.content.length) { + ui.content.push(noResult); + } else { + $("#search-input").empty(); + } + }, + autoFocus: true, + focus: function(event, ui) { + return false; + }, + position: { + collision: "flip" + }, + select: function(event, ui) { + if (ui.item.category) { + var url = getURLPrefix(ui); + if (ui.item.category === catModules) { + url += "module-summary.html"; + } else if (ui.item.category === catPackages) { + if (ui.item.u) { + url = ui.item.u; + } else { + url += ui.item.l.replace(/\./g, '/') + "/package-summary.html"; + } + } else if (ui.item.category === catTypes) { + if (ui.item.u) { + url = ui.item.u; + } else if (ui.item.p === UNNAMED) { + url += ui.item.l + ".html"; + } else { + url += ui.item.p.replace(/\./g, '/') + "/" + ui.item.l + ".html"; + } + } else if (ui.item.category === catMembers) { + if (ui.item.p === UNNAMED) { + url += ui.item.c + ".html" + "#"; + } else { + url += ui.item.p.replace(/\./g, '/') + "/" + ui.item.c + ".html" + "#"; + } + if (ui.item.u) { + url += ui.item.u; + } else { + url += ui.item.l; + } + } else if (ui.item.category === catSearchTags) { + url += ui.item.u; + } + if (top !== window) { + parent.classFrame.location = pathtoroot + url; + } else { + window.location.href = pathtoroot + url; + } + $("#search-input").focus(); + } + } + }); +}); diff --git a/serialized-form.html b/serialized-form.html new file mode 100644 index 00000000..d862ff89 --- /dev/null +++ b/serialized-form.html @@ -0,0 +1,94 @@ + + + + +Serialized Form (org.neuroml.model 1.9.1 API) + + + + + + + + + + + + + + + +
    + +
    +
    +
    +

    Serialized Form

    +
    + +
    +
    +
    +

    Copyright NeuroML Contributors 2022

    +
    +
    +
    + + diff --git a/stylesheet.css b/stylesheet.css new file mode 100644 index 00000000..4a576bd2 --- /dev/null +++ b/stylesheet.css @@ -0,0 +1,869 @@ +/* + * Javadoc style sheet + */ + +@import url('resources/fonts/dejavu.css'); + +/* + * Styles for individual HTML elements. + * + * These are styles that are specific to individual HTML elements. Changing them affects the style of a particular + * HTML element throughout the page. + */ + +body { + background-color:#ffffff; + color:#353833; + font-family:'DejaVu Sans', Arial, Helvetica, sans-serif; + font-size:14px; + margin:0; + padding:0; + height:100%; + width:100%; +} +iframe { + margin:0; + padding:0; + height:100%; + width:100%; + overflow-y:scroll; + border:none; +} +a:link, a:visited { + text-decoration:none; + color:#4A6782; +} +a[href]:hover, a[href]:focus { + text-decoration:none; + color:#bb7a2a; +} +a[name] { + color:#353833; +} +pre { + font-family:'DejaVu Sans Mono', monospace; + font-size:14px; +} +h1 { + font-size:20px; +} +h2 { + font-size:18px; +} +h3 { + font-size:16px; +} +h4 { + font-size:15px; +} +h5 { + font-size:14px; +} +h6 { + font-size:13px; +} +ul { + list-style-type:disc; +} +code, tt { + font-family:'DejaVu Sans Mono', monospace; +} +:not(h1, h2, h3, h4, h5, h6) > code, +:not(h1, h2, h3, h4, h5, h6) > tt { + font-size:14px; + padding-top:4px; + margin-top:8px; + line-height:1.4em; +} +dt code { + font-family:'DejaVu Sans Mono', monospace; + font-size:14px; + padding-top:4px; +} +.summary-table dt code { + font-family:'DejaVu Sans Mono', monospace; + font-size:14px; + vertical-align:top; + padding-top:4px; +} +sup { + font-size:8px; +} +button { + font-family: 'DejaVu Sans', Arial, Helvetica, sans-serif; + font-size: 14px; +} +/* + * Styles for HTML generated by javadoc. + * + * These are style classes that are used by the standard doclet to generate HTML documentation. + */ + +/* + * Styles for document title and copyright. + */ +.clear { + clear:both; + height:0; + overflow:hidden; +} +.about-language { + float:right; + padding:0 21px 8px 8px; + font-size:11px; + margin-top:-9px; + height:2.9em; +} +.legal-copy { + margin-left:.5em; +} +.tab { + background-color:#0066FF; + color:#ffffff; + padding:8px; + width:5em; + font-weight:bold; +} +/* + * Styles for navigation bar. + */ +@media screen { + .flex-box { + position:fixed; + display:flex; + flex-direction:column; + height: 100%; + width: 100%; + } + .flex-header { + flex: 0 0 auto; + } + .flex-content { + flex: 1 1 auto; + overflow-y: auto; + } +} +.top-nav { + background-color:#4D7A97; + color:#FFFFFF; + float:left; + padding:0; + width:100%; + clear:right; + min-height:2.8em; + padding-top:10px; + overflow:hidden; + font-size:12px; +} +.sub-nav { + background-color:#dee3e9; + float:left; + width:100%; + overflow:hidden; + font-size:12px; +} +.sub-nav div { + clear:left; + float:left; + padding:0 0 5px 6px; + text-transform:uppercase; +} +.sub-nav .nav-list { + padding-top:5px; +} +ul.nav-list { + display:block; + margin:0 25px 0 0; + padding:0; +} +ul.sub-nav-list { + float:left; + margin:0 25px 0 0; + padding:0; +} +ul.nav-list li { + list-style:none; + float:left; + padding: 5px 6px; + text-transform:uppercase; +} +.sub-nav .nav-list-search { + float:right; + margin:0 0 0 0; + padding:5px 6px; + clear:none; +} +.nav-list-search label { + position:relative; + right:-16px; +} +ul.sub-nav-list li { + list-style:none; + float:left; + padding-top:10px; +} +.top-nav a:link, .top-nav a:active, .top-nav a:visited { + color:#FFFFFF; + text-decoration:none; + text-transform:uppercase; +} +.top-nav a:hover { + text-decoration:none; + color:#bb7a2a; + text-transform:uppercase; +} +.nav-bar-cell1-rev { + background-color:#F8981D; + color:#253441; + margin: auto 5px; +} +.skip-nav { + position:absolute; + top:auto; + left:-9999px; + overflow:hidden; +} +/* + * Hide navigation links and search box in print layout + */ +@media print { + ul.nav-list, div.sub-nav { + display:none; + } +} +/* + * Styles for page header and footer. + */ +.title { + color:#2c4557; + margin:10px 0; +} +.sub-title { + margin:5px 0 0 0; +} +.header ul { + margin:0 0 15px 0; + padding:0; +} +.header ul li, .footer ul li { + list-style:none; + font-size:13px; +} +/* + * Styles for headings. + */ +body.class-declaration-page .summary h2, +body.class-declaration-page .details h2, +body.class-use-page h2, +body.module-declaration-page .block-list h2 { + font-style: italic; + padding:0; + margin:15px 0; +} +body.class-declaration-page .summary h3, +body.class-declaration-page .details h3, +body.class-declaration-page .summary .inherited-list h2 { + background-color:#dee3e9; + border:1px solid #d0d9e0; + margin:0 0 6px -8px; + padding:7px 5px; +} +/* + * Styles for page layout containers. + */ +main { + clear:both; + padding:10px 20px; + position:relative; +} +dl.notes > dt { + font-family: 'DejaVu Sans', Arial, Helvetica, sans-serif; + font-size:12px; + font-weight:bold; + margin:10px 0 0 0; + color:#4E4E4E; +} +dl.notes > dd { + margin:5px 10px 10px 0; + font-size:14px; + font-family:'DejaVu Serif', Georgia, "Times New Roman", Times, serif; +} +dl.name-value > dt { + margin-left:1px; + font-size:1.1em; + display:inline; + font-weight:bold; +} +dl.name-value > dd { + margin:0 0 0 1px; + font-size:1.1em; + display:inline; +} +/* + * Styles for lists. + */ +li.circle { + list-style:circle; +} +ul.horizontal li { + display:inline; + font-size:0.9em; +} +div.inheritance { + margin:0; + padding:0; +} +div.inheritance div.inheritance { + margin-left:2em; +} +ul.block-list, +ul.details-list, +ul.member-list, +ul.summary-list { + margin:10px 0 10px 0; + padding:0; +} +ul.block-list > li, +ul.details-list > li, +ul.member-list > li, +ul.summary-list > li { + list-style:none; + margin-bottom:15px; + line-height:1.4; +} +.summary-table dl, .summary-table dl dt, .summary-table dl dd { + margin-top:0; + margin-bottom:1px; +} +ul.see-list, ul.see-list-long { + padding-left: 0; + list-style: none; +} +ul.see-list li { + display: inline; +} +ul.see-list li:not(:last-child):after, +ul.see-list-long li:not(:last-child):after { + content: ", "; + white-space: pre-wrap; +} +/* + * Styles for tables. + */ +.summary-table, .details-table { + width:100%; + border-spacing:0; + border-left:1px solid #EEE; + border-right:1px solid #EEE; + border-bottom:1px solid #EEE; + padding:0; +} +.caption { + position:relative; + text-align:left; + background-repeat:no-repeat; + color:#253441; + font-weight:bold; + clear:none; + overflow:hidden; + padding:0; + padding-top:10px; + padding-left:1px; + margin:0; + white-space:pre; +} +.caption a:link, .caption a:visited { + color:#1f389c; +} +.caption a:hover, +.caption a:active { + color:#FFFFFF; +} +.caption span { + white-space:nowrap; + padding-top:5px; + padding-left:12px; + padding-right:12px; + padding-bottom:7px; + display:inline-block; + float:left; + background-color:#F8981D; + border: none; + height:16px; +} +div.table-tabs { + padding:10px 0 0 1px; + margin:0; +} +div.table-tabs > button { + border: none; + cursor: pointer; + padding: 5px 12px 7px 12px; + font-weight: bold; + margin-right: 3px; +} +div.table-tabs > button.active-table-tab { + background: #F8981D; + color: #253441; +} +div.table-tabs > button.table-tab { + background: #4D7A97; + color: #FFFFFF; +} +.two-column-summary { + display: grid; + grid-template-columns: minmax(15%, max-content) minmax(15%, auto); +} +.three-column-summary { + display: grid; + grid-template-columns: minmax(10%, max-content) minmax(15%, max-content) minmax(15%, auto); +} +.four-column-summary { + display: grid; + grid-template-columns: minmax(10%, max-content) minmax(10%, max-content) minmax(10%, max-content) minmax(10%, auto); +} +@media screen and (max-width: 600px) { + .two-column-summary { + display: grid; + grid-template-columns: 1fr; + } +} +@media screen and (max-width: 800px) { + .three-column-summary { + display: grid; + grid-template-columns: minmax(10%, max-content) minmax(25%, auto); + } + .three-column-summary .col-last { + grid-column-end: span 2; + } +} +@media screen and (max-width: 1000px) { + .four-column-summary { + display: grid; + grid-template-columns: minmax(15%, max-content) minmax(15%, auto); + } +} +.summary-table > div, .details-table > div { + text-align:left; + padding: 8px 3px 3px 7px; +} +.col-first, .col-second, .col-last, .col-constructor-name, .col-summary-item-name { + vertical-align:top; + padding-right:0; + padding-top:8px; + padding-bottom:3px; +} +.table-header { + background:#dee3e9; + font-weight: bold; +} +.col-first, .col-first { + font-size:13px; +} +.col-second, .col-second, .col-last, .col-constructor-name, .col-summary-item-name, .col-last { + font-size:13px; +} +.col-first, .col-second, .col-constructor-name { + vertical-align:top; + overflow: auto; +} +.col-last { + white-space:normal; +} +.col-first a:link, .col-first a:visited, +.col-second a:link, .col-second a:visited, +.col-first a:link, .col-first a:visited, +.col-second a:link, .col-second a:visited, +.col-constructor-name a:link, .col-constructor-name a:visited, +.col-summary-item-name a:link, .col-summary-item-name a:visited, +.constant-values-container a:link, .constant-values-container a:visited, +.all-classes-container a:link, .all-classes-container a:visited, +.all-packages-container a:link, .all-packages-container a:visited { + font-weight:bold; +} +.table-sub-heading-color { + background-color:#EEEEFF; +} +.even-row-color, .even-row-color .table-header { + background-color:#FFFFFF; +} +.odd-row-color, .odd-row-color .table-header { + background-color:#EEEEEF; +} +/* + * Styles for contents. + */ +.deprecated-content { + margin:0; + padding:10px 0; +} +div.block { + font-size:14px; + font-family:'DejaVu Serif', Georgia, "Times New Roman", Times, serif; +} +.col-last div { + padding-top:0; +} +.col-last a { + padding-bottom:3px; +} +.module-signature, +.package-signature, +.type-signature, +.member-signature { + font-family:'DejaVu Sans Mono', monospace; + font-size:14px; + margin:14px 0; + white-space: pre-wrap; +} +.module-signature, +.package-signature, +.type-signature { + margin-top: 0; +} +.member-signature .type-parameters-long, +.member-signature .parameters, +.member-signature .exceptions { + display: inline-block; + vertical-align: top; + white-space: pre; +} +.member-signature .type-parameters { + white-space: normal; +} +/* + * Styles for formatting effect. + */ +.source-line-no { + color:green; + padding:0 30px 0 0; +} +h1.hidden { + visibility:hidden; + overflow:hidden; + font-size:10px; +} +.block { + display:block; + margin:0 10px 5px 0; + color:#474747; +} +.deprecated-label, .descfrm-type-label, .implementation-label, .member-name-label, .member-name-link, +.module-label-in-package, .module-label-in-type, .override-specify-label, .package-label-in-type, +.package-hierarchy-label, .type-name-label, .type-name-link, .search-tag-link, .preview-label { + font-weight:bold; +} +.deprecation-comment, .help-footnote, .preview-comment { + font-style:italic; +} +.deprecation-block { + font-size:14px; + font-family:'DejaVu Serif', Georgia, "Times New Roman", Times, serif; + border-style:solid; + border-width:thin; + border-radius:10px; + padding:10px; + margin-bottom:10px; + margin-right:10px; + display:inline-block; +} +.preview-block { + font-size:14px; + font-family:'DejaVu Serif', Georgia, "Times New Roman", Times, serif; + border-style:solid; + border-width:thin; + border-radius:10px; + padding:10px; + margin-bottom:10px; + margin-right:10px; + display:inline-block; +} +div.block div.deprecation-comment { + font-style:normal; +} +/* + * Styles specific to HTML5 elements. + */ +main, nav, header, footer, section { + display:block; +} +/* + * Styles for javadoc search. + */ +.ui-autocomplete-category { + font-weight:bold; + font-size:15px; + padding:7px 0 7px 3px; + background-color:#4D7A97; + color:#FFFFFF; +} +.result-item { + font-size:13px; +} +.ui-autocomplete { + max-height:85%; + max-width:65%; + overflow-y:scroll; + overflow-x:scroll; + white-space:nowrap; + box-shadow: 0 3px 6px rgba(0,0,0,0.16), 0 3px 6px rgba(0,0,0,0.23); +} +ul.ui-autocomplete { + position:fixed; + z-index:999999; + background-color: #FFFFFF; +} +ul.ui-autocomplete li { + float:left; + clear:both; + width:100%; +} +.result-highlight { + font-weight:bold; +} +.ui-autocomplete .result-item { + font-size: inherit; +} +#search-input { + background-image:url('resources/glass.png'); + background-size:13px; + background-repeat:no-repeat; + background-position:2px 3px; + padding-left:20px; + position:relative; + right:-18px; + width:400px; +} +#reset-button { + background-color: rgb(255,255,255); + background-image:url('resources/x.png'); + background-position:center; + background-repeat:no-repeat; + background-size:12px; + border:0 none; + width:16px; + height:16px; + position:relative; + left:-4px; + top:-4px; + font-size:0px; +} +.watermark { + color:#545454; +} +.search-tag-desc-result { + font-style:italic; + font-size:11px; +} +.search-tag-holder-result { + font-style:italic; + font-size:12px; +} +.search-tag-result:target { + background-color:yellow; +} +.module-graph span { + display:none; + position:absolute; +} +.module-graph:hover span { + display:block; + margin: -100px 0 0 100px; + z-index: 1; +} +.inherited-list { + margin: 10px 0 10px 0; +} +section.class-description { + line-height: 1.4; +} +.summary section[class$="-summary"], .details section[class$="-details"], +.class-uses .detail, .serialized-class-details { + padding: 0px 20px 5px 10px; + border: 1px solid #ededed; + background-color: #f8f8f8; +} +.inherited-list, section[class$="-details"] .detail { + padding:0 0 5px 8px; + background-color:#ffffff; + border:none; +} +.vertical-separator { + padding: 0 5px; +} +ul.help-section-list { + margin: 0; +} +ul.help-subtoc > li { + display: inline-block; + padding-right: 5px; + font-size: smaller; +} +ul.help-subtoc > li::before { + content: "\2022" ; + padding-right:2px; +} +span.help-note { + font-style: italic; +} +/* + * Indicator icon for external links. + */ +main a[href*="://"]::after { + content:""; + display:inline-block; + background-image:url('data:image/svg+xml; utf8, \ + \ + \ + '); + background-size:100% 100%; + width:7px; + height:7px; + margin-left:2px; + margin-bottom:4px; +} +main a[href*="://"]:hover::after, +main a[href*="://"]:focus::after { + background-image:url('data:image/svg+xml; utf8, \ + \ + \ + '); +} + +/* + * Styles for user-provided tables. + * + * borderless: + * No borders, vertical margins, styled caption. + * This style is provided for use with existing doc comments. + * In general, borderless tables should not be used for layout purposes. + * + * plain: + * Plain borders around table and cells, vertical margins, styled caption. + * Best for small tables or for complex tables for tables with cells that span + * rows and columns, when the "striped" style does not work well. + * + * striped: + * Borders around the table and vertical borders between cells, striped rows, + * vertical margins, styled caption. + * Best for tables that have a header row, and a body containing a series of simple rows. + */ + +table.borderless, +table.plain, +table.striped { + margin-top: 10px; + margin-bottom: 10px; +} +table.borderless > caption, +table.plain > caption, +table.striped > caption { + font-weight: bold; + font-size: smaller; +} +table.borderless th, table.borderless td, +table.plain th, table.plain td, +table.striped th, table.striped td { + padding: 2px 5px; +} +table.borderless, +table.borderless > thead > tr > th, table.borderless > tbody > tr > th, table.borderless > tr > th, +table.borderless > thead > tr > td, table.borderless > tbody > tr > td, table.borderless > tr > td { + border: none; +} +table.borderless > thead > tr, table.borderless > tbody > tr, table.borderless > tr { + background-color: transparent; +} +table.plain { + border-collapse: collapse; + border: 1px solid black; +} +table.plain > thead > tr, table.plain > tbody tr, table.plain > tr { + background-color: transparent; +} +table.plain > thead > tr > th, table.plain > tbody > tr > th, table.plain > tr > th, +table.plain > thead > tr > td, table.plain > tbody > tr > td, table.plain > tr > td { + border: 1px solid black; +} +table.striped { + border-collapse: collapse; + border: 1px solid black; +} +table.striped > thead { + background-color: #E3E3E3; +} +table.striped > thead > tr > th, table.striped > thead > tr > td { + border: 1px solid black; +} +table.striped > tbody > tr:nth-child(even) { + background-color: #EEE +} +table.striped > tbody > tr:nth-child(odd) { + background-color: #FFF +} +table.striped > tbody > tr > th, table.striped > tbody > tr > td { + border-left: 1px solid black; + border-right: 1px solid black; +} +table.striped > tbody > tr > th { + font-weight: normal; +} +/** + * Tweak font sizes and paddings for small screens. + */ +@media screen and (max-width: 1050px) { + #search-input { + width: 300px; + } +} +@media screen and (max-width: 800px) { + #search-input { + width: 200px; + } + .top-nav, + .bottom-nav { + font-size: 11px; + padding-top: 6px; + } + .sub-nav { + font-size: 11px; + } + .about-language { + padding-right: 16px; + } + ul.nav-list 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