diff --git a/deno.jsonc b/deno.jsonc
index 6a21bc8..ab5b645 100644
--- a/deno.jsonc
+++ b/deno.jsonc
@@ -2,11 +2,11 @@
     "name": "@nfnitloop/deno-embedder",
     "version": "1.4.7",
     "exports": {
-        ".": "./mod.ts",
-        "./plugins/plugins": "./plugins/plugins.ts",
-        "./plugins/esbuild": "./plugins/esbuild.ts",
-        "./helpers/oak": "./helpers/oak.ts",
-        "./helpers/hono": "./helpers/hono.ts",
+        ".": "./src/mod.ts",
+        "./plugins/plugins": "./src/plugins/plugins.ts",
+        "./plugins/esbuild": "./src/plugins/esbuild.ts",
+        "./helpers/oak": "./src/helpers/oak.ts",
+        "./helpers/hono": "./src/helpers/hono.ts",
 
         // Allows easily running the example server:
         "./examples/with-embedder": "./examples/with-embedder/server.ts",
@@ -18,20 +18,12 @@
         "./examples/hono": "./examples/hono/server.ts",
 
         // Needs to be exposed so that embedded files can import w/ JSR syntax. You shouldn't use this directly.
-        "./embed.ts": "./embed.ts"
+        "./embed.ts": "./src/embed.ts"
     },
     "publish": {
         "include": [
             "README.md",
-
-            "mod.ts",
-            "embed.ts",
-
-            // TODO: Move stuff into a src/ dir now that we have JSR exports. (<3)
-            "_src/**/*.ts",
-            "deps/**/*.ts",
-            "plugins/**/*.ts",
-            "helpers/**/*.ts",
+            "src/**/*.ts",
             "examples/with-embedder/**/*.ts",
             "examples/hono/**/*.ts"
         ]
@@ -41,7 +33,7 @@
         "test": "deno task check && deno test --doc -A && deno task examples:test && deno task lints",
 
         "check": "deno task check:main && deno task check:without-embedder && deno task examples:build && deno task examples:check && deno task check:publish",
-        "check:main": "deno check mod.ts embed.ts helpers/oak.ts helpers/hono.ts plugins/esbuild.ts",
+        "check:main": "deno check src/mod.ts src/embed.ts src/helpers/oak.ts src/helpers/hono.ts src/plugins/esbuild.ts",
         "check:publish": "deno publish --dry-run --allow-dirty",
         "check:without-embedder": "cd examples/without-embedder; deno task check",
 
@@ -79,7 +71,7 @@
             // Has example code that references theoretical modules:
             "README.md",
             // Pseudocode doc block example:
-            "helpers/hono.ts"
+            "src/helpers/hono.ts"
         ]
     }
 }
\ No newline at end of file
diff --git a/deno.lock b/deno.lock
index a2c4bc2..04c7b6a 100644
--- a/deno.lock
+++ b/deno.lock
@@ -8,6 +8,7 @@
       "jsr:@david/dax": "jsr:@david/dax@0.41.0",
       "jsr:@david/dax@0.41": "jsr:@david/dax@0.41.0",
       "jsr:@david/which@^0.4.1": "jsr:@david/which@0.4.1",
+      "jsr:@hono/hono@^4.0": "jsr:@hono/hono@4.4.8",
       "jsr:@hono/hono@^4.0.0": "jsr:@hono/hono@4.4.8",
       "jsr:@luca/esbuild-deno-loader@^0.10.3": "jsr:@luca/esbuild-deno-loader@0.10.3",
       "jsr:@oak/commons@0.10": "jsr:@oak/commons@0.10.1",
diff --git a/examples/hono/deno.lock b/examples/hono/deno.lock
index b902f4d..c8b45c4 100644
--- a/examples/hono/deno.lock
+++ b/examples/hono/deno.lock
@@ -6,6 +6,7 @@
       "jsr:@cliffy/flags@1.0.0-rc.4": "jsr:@cliffy/flags@1.0.0-rc.4",
       "jsr:@cliffy/table@1.0.0-rc.4": "jsr:@cliffy/table@1.0.0-rc.4",
       "jsr:@cross/runtime@1.0.0": "jsr:@cross/runtime@1.0.0",
+      "jsr:@hono/hono@^4.0": "jsr:@hono/hono@4.4.8",
       "jsr:@hono/hono@^4.0.0": "jsr:@hono/hono@4.4.8",
       "jsr:@luca/esbuild-deno-loader@^0.10.3": "jsr:@luca/esbuild-deno-loader@0.10.3",
       "jsr:@std/assert@^0.196.0": "jsr:@std/assert@0.196.0",
diff --git a/examples/hono/embed/code/_app.js.ts b/examples/hono/embed/code/_app.js.ts
index 75f3ed4..8fe1432 100644
--- a/examples/hono/embed/code/_app.js.ts
+++ b/examples/hono/embed/code/_app.js.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../embed.ts"
+import {F} from "../../../../src/embed.ts"
 export default F({
  size: 32685,
  compression: "gzip",
diff --git a/examples/hono/embed/code/dir.ts b/examples/hono/embed/code/dir.ts
index 9581874..a6d9944 100644
--- a/examples/hono/embed/code/dir.ts
+++ b/examples/hono/embed/code/dir.ts
@@ -1,4 +1,4 @@
-import {E} from "../../../../embed.ts"
+import {E} from "../../../../src/embed.ts"
 
 export default E({
   "app.js": () => import("./_app.js.ts"),
diff --git a/examples/hono/embed/static/_Smiley.svg.ts b/examples/hono/embed/static/_Smiley.svg.ts
index 2000965..fe96005 100644
--- a/examples/hono/embed/static/_Smiley.svg.ts
+++ b/examples/hono/embed/static/_Smiley.svg.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../embed.ts"
+import {F} from "../../../../src/embed.ts"
 export default F({
  size: 1120,
  compression: "gzip",
diff --git a/examples/hono/embed/static/_index.html.ts b/examples/hono/embed/static/_index.html.ts
index e297cfe..59a8046 100644
--- a/examples/hono/embed/static/_index.html.ts
+++ b/examples/hono/embed/static/_index.html.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../embed.ts"
+import {F} from "../../../../src/embed.ts"
 export default F({
  size: 245,
  encoded: `
diff --git a/examples/hono/embed/static/dir.ts b/examples/hono/embed/static/dir.ts
index 87e0ee7..5381a6b 100644
--- a/examples/hono/embed/static/dir.ts
+++ b/examples/hono/embed/static/dir.ts
@@ -1,4 +1,4 @@
-import {E} from "../../../../embed.ts"
+import {E} from "../../../../src/embed.ts"
 
 export default E({
   "Smiley.svg": () => import("./_Smiley.svg.ts"),
diff --git a/examples/hono/embedder.ts b/examples/hono/embedder.ts
index 7f4f6fc..040355d 100644
--- a/examples/hono/embedder.ts
+++ b/examples/hono/embedder.ts
@@ -2,8 +2,8 @@
 // lives in the same repository as this example. You should import these from
 // `jsr:@nfnitloop/deno-embedder@version`
 //
-import * as embedder from "../../mod.ts"
-import { ESBuild } from "../../plugins/esbuild.ts"
+import * as embedder from "../../src/mod.ts"
+import { ESBuild } from "../../src/plugins/esbuild.ts"
 
 
 export const options = {
diff --git a/examples/hono/server.ts b/examples/hono/server.ts
index 83cae97..d631cb9 100644
--- a/examples/hono/server.ts
+++ b/examples/hono/server.ts
@@ -1,5 +1,5 @@
-import { Hono } from "../../deps/hono.ts";
-import { serveDir, serveStatic } from "../../helpers/hono.ts";
+import { Hono } from "../../src/deps/hono.ts";
+import { serveDir, serveStatic } from "../../src/helpers/hono.ts";
 import staticFiles from "./embed/static/dir.ts";
 import bundledJs from "./embed/code/dir.ts";
 
diff --git a/examples/with-embedder/embed/code/_app.js.ts b/examples/with-embedder/embed/code/_app.js.ts
index 75f3ed4..8fe1432 100644
--- a/examples/with-embedder/embed/code/_app.js.ts
+++ b/examples/with-embedder/embed/code/_app.js.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../embed.ts"
+import {F} from "../../../../src/embed.ts"
 export default F({
  size: 32685,
  compression: "gzip",
diff --git a/examples/with-embedder/embed/code/dir.ts b/examples/with-embedder/embed/code/dir.ts
index 9581874..a6d9944 100644
--- a/examples/with-embedder/embed/code/dir.ts
+++ b/examples/with-embedder/embed/code/dir.ts
@@ -1,4 +1,4 @@
-import {E} from "../../../../embed.ts"
+import {E} from "../../../../src/embed.ts"
 
 export default E({
   "app.js": () => import("./_app.js.ts"),
diff --git a/examples/with-embedder/embed/static/_Smiley.svg.ts b/examples/with-embedder/embed/static/_Smiley.svg.ts
index 2000965..fe96005 100644
--- a/examples/with-embedder/embed/static/_Smiley.svg.ts
+++ b/examples/with-embedder/embed/static/_Smiley.svg.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../embed.ts"
+import {F} from "../../../../src/embed.ts"
 export default F({
  size: 1120,
  compression: "gzip",
diff --git a/examples/with-embedder/embed/static/_index.html.ts b/examples/with-embedder/embed/static/_index.html.ts
index e297cfe..59a8046 100644
--- a/examples/with-embedder/embed/static/_index.html.ts
+++ b/examples/with-embedder/embed/static/_index.html.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../embed.ts"
+import {F} from "../../../../src/embed.ts"
 export default F({
  size: 245,
  encoded: `
diff --git a/examples/with-embedder/embed/static/dir.ts b/examples/with-embedder/embed/static/dir.ts
index 87e0ee7..5381a6b 100644
--- a/examples/with-embedder/embed/static/dir.ts
+++ b/examples/with-embedder/embed/static/dir.ts
@@ -1,4 +1,4 @@
-import {E} from "../../../../embed.ts"
+import {E} from "../../../../src/embed.ts"
 
 export default E({
   "Smiley.svg": () => import("./_Smiley.svg.ts"),
diff --git a/examples/with-embedder/embedder.ts b/examples/with-embedder/embedder.ts
index 7f4f6fc..040355d 100644
--- a/examples/with-embedder/embedder.ts
+++ b/examples/with-embedder/embedder.ts
@@ -2,8 +2,8 @@
 // lives in the same repository as this example. You should import these from
 // `jsr:@nfnitloop/deno-embedder@version`
 //
-import * as embedder from "../../mod.ts"
-import { ESBuild } from "../../plugins/esbuild.ts"
+import * as embedder from "../../src/mod.ts"
+import { ESBuild } from "../../src/plugins/esbuild.ts"
 
 
 export const options = {
diff --git a/examples/with-embedder/server.ts b/examples/with-embedder/server.ts
index f5a8283..d0b77bd 100644
--- a/examples/with-embedder/server.ts
+++ b/examples/with-embedder/server.ts
@@ -1,4 +1,4 @@
-import { serveDir, oak } from "../../helpers/oak.ts"
+import { serveDir, oak } from "../../src/helpers/oak.ts"
 import staticFiles from "./embed/static/dir.ts"
 import bundledJs from "./embed/code/dir.ts"
 import sarcasm from "./browserCode/sarcasm.ts";
diff --git a/examples/without-embedder/server.ts b/examples/without-embedder/server.ts
index 44a8fd4..b47dfe3 100644
--- a/examples/without-embedder/server.ts
+++ b/examples/without-embedder/server.ts
@@ -1,4 +1,4 @@
-import { Application } from "../../deps/oak.ts";
+import { Application } from "../../src/deps/oak.ts";
 
 const app = new Application();
 
diff --git a/deps/cliffy/command.ts b/src/deps/cliffy/command.ts
similarity index 100%
rename from deps/cliffy/command.ts
rename to src/deps/cliffy/command.ts
diff --git a/deps/hono.ts b/src/deps/hono.ts
similarity index 100%
rename from deps/hono.ts
rename to src/deps/hono.ts
diff --git a/deps/oak.ts b/src/deps/oak.ts
similarity index 100%
rename from deps/oak.ts
rename to src/deps/oak.ts
diff --git a/deps/std/async.ts b/src/deps/std/async.ts
similarity index 100%
rename from deps/std/async.ts
rename to src/deps/std/async.ts
diff --git a/deps/std/encoding/base64.ts b/src/deps/std/encoding/base64.ts
similarity index 100%
rename from deps/std/encoding/base64.ts
rename to src/deps/std/encoding/base64.ts
diff --git a/deps/std/fs.ts b/src/deps/std/fs.ts
similarity index 100%
rename from deps/std/fs.ts
rename to src/deps/std/fs.ts
diff --git a/deps/std/media_types.ts b/src/deps/std/media_types.ts
similarity index 100%
rename from deps/std/media_types.ts
rename to src/deps/std/media_types.ts
diff --git a/deps/std/path.ts b/src/deps/std/path.ts
similarity index 100%
rename from deps/std/path.ts
rename to src/deps/std/path.ts
diff --git a/embed.ts b/src/embed.ts
similarity index 100%
rename from embed.ts
rename to src/embed.ts
diff --git a/helpers/hono.ts b/src/helpers/hono.ts
similarity index 100%
rename from helpers/hono.ts
rename to src/helpers/hono.ts
diff --git a/helpers/oak.ts b/src/helpers/oak.ts
similarity index 100%
rename from helpers/oak.ts
rename to src/helpers/oak.ts
diff --git a/_src/jsr_fix.ts b/src/jsr_fix.ts
similarity index 100%
rename from _src/jsr_fix.ts
rename to src/jsr_fix.ts
diff --git a/_src/jsr_fix_test.ts b/src/jsr_fix_test.ts
similarity index 100%
rename from _src/jsr_fix_test.ts
rename to src/jsr_fix_test.ts
diff --git a/mod.ts b/src/mod.ts
similarity index 99%
rename from mod.ts
rename to src/mod.ts
index ba168e1..7d3f631 100644
--- a/mod.ts
+++ b/src/mod.ts
@@ -22,8 +22,8 @@ import { Command } from "./deps/cliffy/command.ts";
 
 import * as embed from "./embed.ts"
 import type { FileEmitter, Plugin } from "./plugins/plugins.ts"
-import { recursiveReadDir } from "./_src/util.ts";
-import { toJsr } from "./_src/jsr_fix.ts";
+import { recursiveReadDir } from "./util.ts";
+import { toJsr } from "./jsr_fix.ts";
 
 const VERSION = "1.0.0"
 const DIR_FILENAME = "dir.ts"
diff --git a/plugins/esbuild.ts b/src/plugins/esbuild.ts
similarity index 100%
rename from plugins/esbuild.ts
rename to src/plugins/esbuild.ts
diff --git a/plugins/plugins.ts b/src/plugins/plugins.ts
similarity index 100%
rename from plugins/plugins.ts
rename to src/plugins/plugins.ts
diff --git a/_src/util.ts b/src/util.ts
similarity index 92%
rename from _src/util.ts
rename to src/util.ts
index 8c07871..e997484 100644
--- a/_src/util.ts
+++ b/src/util.ts
@@ -3,7 +3,7 @@
  * @module
  */
 
-import { join as pathJoin } from "../deps/std/path.ts";
+import { join as pathJoin } from "./deps/std/path.ts";
 
 /** Read all files from a directory tree, recursively.  */
 export async function * recursiveReadDir(dir: string): AsyncGenerator<Deno.DirEntry> {
diff --git a/tests/jsr_paths/sample/embedder.ts b/tests/jsr_paths/sample/embedder.ts
index c60312a..f8252ac 100644
--- a/tests/jsr_paths/sample/embedder.ts
+++ b/tests/jsr_paths/sample/embedder.ts
@@ -1,4 +1,4 @@
-import * as embedder from "../../../mod.ts"
+import * as embedder from "../../../src/mod.ts"
 
 export const options = {
     importMeta: import.meta,
diff --git a/tests/jsr_paths/sample/src/embedded/_foo_bar.ts.ts b/tests/jsr_paths/sample/src/embedded/_foo_bar.ts.ts
index 1aaff0c..6ccb570 100644
--- a/tests/jsr_paths/sample/src/embedded/_foo_bar.ts.ts
+++ b/tests/jsr_paths/sample/src/embedded/_foo_bar.ts.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../../embed.ts"
+import {F} from "../../../../../src/embed.ts"
 export default F({
  size: 68,
  encoded: `
diff --git a/tests/jsr_paths/sample/src/embedded/_foobar_.d_ts_.ts.ts b/tests/jsr_paths/sample/src/embedded/_foobar_.d_ts_.ts.ts
index 1aaff0c..6ccb570 100644
--- a/tests/jsr_paths/sample/src/embedded/_foobar_.d_ts_.ts.ts
+++ b/tests/jsr_paths/sample/src/embedded/_foobar_.d_ts_.ts.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../../embed.ts"
+import {F} from "../../../../../src/embed.ts"
 export default F({
  size: 68,
  encoded: `
diff --git a/tests/jsr_paths/sample/src/embedded/dir.ts b/tests/jsr_paths/sample/src/embedded/dir.ts
index ca808b0..1f01ef5 100644
--- a/tests/jsr_paths/sample/src/embedded/dir.ts
+++ b/tests/jsr_paths/sample/src/embedded/dir.ts
@@ -1,4 +1,4 @@
-import {E} from "../../../../../embed.ts"
+import {E} from "../../../../../src/embed.ts"
 
 export default E({
   "foo bar.ts": () => import("./_foo_bar.ts.ts"),
diff --git a/tests/jsr_paths/sample/src/embedded/foo_bar/_baz.txt.ts b/tests/jsr_paths/sample/src/embedded/foo_bar/_baz.txt.ts
index ddd6ac4..d453ad0 100644
--- a/tests/jsr_paths/sample/src/embedded/foo_bar/_baz.txt.ts
+++ b/tests/jsr_paths/sample/src/embedded/foo_bar/_baz.txt.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../../../embed.ts"
+import {F} from "../../../../../../src/embed.ts"
 export default F({
  size: 9,
  encoded: `
diff --git a/tests/jsr_paths/sample/src/embedded/foo_bar/_baz_etc.md.ts b/tests/jsr_paths/sample/src/embedded/foo_bar/_baz_etc.md.ts
index 389267b..38f8cc1 100644
--- a/tests/jsr_paths/sample/src/embedded/foo_bar/_baz_etc.md.ts
+++ b/tests/jsr_paths/sample/src/embedded/foo_bar/_baz_etc.md.ts
@@ -1,4 +1,4 @@
-import {F} from "../../../../../../embed.ts"
+import {F} from "../../../../../../src/embed.ts"
 export default F({
  size: 19,
  encoded: `