diff --git a/CHANGELOG.md b/CHANGELOG.md index 3d4f073..6b524d8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,7 @@ All notable changes to this project will be documented in this file. `knockoff-factory` adheres to [Semantic Versioning](http://semver.org/). #### 4.x Releases +- `4.1.x` Releases - [4.1.0](#410) - `4.0.x` Releases - [4.0.0](#400) #### 3.x Releases @@ -36,6 +37,19 @@ All notable changes to this project will be documented in this file. #### Removed +#### Fixed +--- + +## 4.1.0 + +#### Added +- CollectionsFactory for providing factory functions that return multiple columns + - Added by [Gregory Yu](https://github.com/gregyu) in Pull Request [#2](https://github.com/Nike-Inc/knockoff-factory/pull/2) +- Documentation and jupyter notebook for KnockoffTable + - Added by [Gregory Yu](https://github.com/gregyu) in Pull Request [#2](https://github.com/Nike-Inc/knockoff-factory/pull/2) + +#### Updated + #### Fixed --- diff --git a/README.md b/README.md index fb2dbbc..6ee6ed1 100644 --- a/README.md +++ b/README.md @@ -11,6 +11,46 @@ Knockoff Factory A library for generating mock data and creating database fixtures that can be used for unit testing. +Table of content +* [Installation](#installation) +* [Changelog](#changelog) +* [Documentation](#documentation) +* [Future Work](#Future-work) + +# Installation +```shell script +pip install knockoff +``` + + +# Changelog + +See the [changelog](CHANGELOG.md) for a history of notable changes to knockoff. + +# Documentation + +We are working on adding more documentation and examples! + +* knockoff sdk + * [KnockoffTable](notebook/KnockoffTable.ipynb) + * KnockoffDB + * KnockoffDatabaseService +* TempDatabaseService +* knockoff cli + + +# Future work +* Further documentation and examples for SDK +* Add yaml based configuration for SDK +* Make extensible generic output for KnockffDB.insert (csv, parquet, etc) +* Enable append option for KnockoffDB.insert +* Autodiscover and populate all tables by using reflection and building dependency graph with foreign key relationships +* Parallelize execution of dag. (e.g. https://ipython.org/ipython-doc/stable/parallel/dag_dependencies.html) + + +Local development setup and legacy documentation +--- + # Run poetry install/update with psycopg2 Requirements: @@ -70,12 +110,6 @@ following environment variable export TEST_POSTGRES_ENABLED=0 ``` -### Knockoff Python Based Configuration - -We will be providing documentation along with example repo's for -the python based configuration using the knockoff.sdk modules. - - ### Knockoff Legacy Yaml Based Configuration Note: This yaml based configuration has been moved under the legacy subcommand for knockoff and a new yaml based configuration will be introduced that @@ -284,11 +318,3 @@ Note: if you are loading data from an s3 bucket you have access to, you can enab container access to those credentials by adding `-v ~/.aws:/root/.aws` to the `docker run` command. -### Future work -* Add documentation and examples for SDK -* Add yaml based configuration for SDK -* Make extensible generic output for KnockffDB.insert (csv, parquet, etc) -* Enable append option for KnockoffDB.insert -* Autodiscover and populate all tables by using reflection and building dependency graph with foreign key relationships -* Documentation / use-cases -* Parallelize execution of dag. (e.g. https://ipython.org/ipython-doc/stable/parallel/dag_dependencies.html) diff --git a/knockoff/sdk/factory/collections.py b/knockoff/sdk/factory/collections.py index 706c103..c0e74dc 100644 --- a/knockoff/sdk/factory/collections.py +++ b/knockoff/sdk/factory/collections.py @@ -10,6 +10,42 @@ from .next_strategy.table import sample_table +class CollectionsFactory(object): + def __init__(self, + callable_, + columns=None, + rename=None, + drop=None, + depends_on=None): + self.callable = callable_ + self.depends_on = depends_on + self.columns = columns + self.rename = rename or {} + self.drop = set(drop or []) + + def __call__(self, *args, **kwargs): + record = self.callable(*args, **kwargs) + return resolve_columns(record, + columns=self.columns, + rename=self.rename, + drop=self.drop) + + +def resolve_columns(record, + columns=None, + rename=None, + drop=None): + rename = rename or {} + drop = set(drop or []) + out = {} + columns = columns or record.keys() + for col in columns: + if col in drop: + continue + out[rename.get(col, col)] = record[col] + return out + + class KnockoffFactory(object): def __init__(self, obj, columns=None, rename=None, drop=None, next_strategy_callable=None, diff --git a/knockoff/sdk/table.py b/knockoff/sdk/table.py index d1fdb84..6027ba3 100644 --- a/knockoff/sdk/table.py +++ b/knockoff/sdk/table.py @@ -18,6 +18,7 @@ from .factory.column import ColumnFactory +from .factory.collections import CollectionsFactory logger = logging.getLogger(__name__) @@ -180,7 +181,7 @@ def build_record(self): "Use ColumnFactory instead") col, factory = factory key_values = {col: factory()} - elif (isinstance(factory, (ColumnFactory,)) and + elif (isinstance(factory, (ColumnFactory, CollectionsFactory)) and factory.depends_on): kwargs = {key: data[key] for key in factory.depends_on} key_values = factory(**kwargs) diff --git a/notebook/KnockoffTable.ipynb b/notebook/KnockoffTable.ipynb new file mode 100644 index 0000000..56892c5 --- /dev/null +++ b/notebook/KnockoffTable.ipynb @@ -0,0 +1,746 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "id": "e7908bb7", + "metadata": {}, + "source": [ + "# KnockoffTable\n", + "(`knockoff.sdk.table:KnockoffTable`)\n", + "\n", + "This is the primary class for configuring how knockoff populates a table. \n", + "\n", + "* [Factories](#Factories)\n", + " * [ColumnFactory](#ColumnFactory) (`knockoff.sdk.factory.column:ColumnFactory`)\n", + " * [CollectionsFactory](#CollectionsFactory) ('knockoff.sdk.factory.collections:CollectionsFactory')\n", + " * [KnockoffDataFrameFactory](#KnockoffDataFrameFactory) (`knockoff.sdk.factory.collections:KnockoffDataFrameFactory`) \n", + " * randomly sample input DataFrame rows\n", + " * cycling through input DataFrame rows\n", + " * [KnockoffTableFactory](#KnockoffTableFactory) (`knockoff.sdk.factory.collections:KnockoffTableFactory`)\n", + "* [KnockoffUniqueConstraint](#KnockoffUniqueConstraint)\n", + "* [Autoloading](#Autoloading)\n", + "\n", + "\n", + "### Factories\n", + "\n", + "A list of `factories` are provided in the __init__ of KnockoffTable that will be used at build time to generate rows (the number of rows generated is declared with the `size` parameter). Calls to the factories are made to generate data for each row.\n", + "\n" + ] + }, + { + "cell_type": "markdown", + "id": "d5b23219", + "metadata": {}, + "source": [ + "#### ColumnFactory" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "id": "d4fac0fc", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "call[0]: {'some_column': 0.5000619168058782}\n", + "call[1]: {'some_column': 0.9885946890702473}\n", + "call[2]: {'some_column': 0.41250444122739394}\n", + "call[3]: {'some_column': 0.4462999921807126}\n", + "call[4]: {'some_column': 0.06017712225706928}\n" + ] + } + ], + "source": [ + "import random\n", + "from knockoff.sdk.factory.column import ColumnFactory\n", + "\n", + "# create a factory that generates a random value for \"some_column\" using the random.random function\n", + "factory = ColumnFactory('some_column', random.random)\n", + "for i in range(5):\n", + " print(f\"call[{i}]: {factory()}\")" + ] + }, + { + "cell_type": "markdown", + "id": "14b47406", + "metadata": {}, + "source": [ + "#### CollectionsFactory" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "ea5b346f", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "call[0]: {'col1': 4, 'col2': 0.5771082134122193}\n", + "call[1]: {'col1': 10, 'col2': 0.9443929581234238}\n", + "call[2]: {'col1': 9, 'col2': 0.5833487911234037}\n", + "call[3]: {'col1': 10, 'col2': 0.16599398285529154}\n", + "call[4]: {'col1': 5, 'col2': 0.3534517643813895}\n" + ] + } + ], + "source": [ + "from knockoff.sdk.factory.collections import CollectionsFactory\n", + "\n", + "# this can be any callable that returns a dictionary\n", + "def func():\n", + " return {'col1': random.randint(0,10),\n", + " 'col2': random.random()}\n", + "\n", + "factory = CollectionsFactory(func)\n", + "for i in range(5):\n", + " print(f\"call[{i}]: {factory()}\")" + ] + }, + { + "cell_type": "markdown", + "id": "31b25cc2", + "metadata": {}, + "source": [ + "#### KnockoffDataFrameFactory\n", + "\n", + "This class takes a DataFrame as input to use to generate rows. The default behavior is to **randomly sample input DataFrame rows** for each call to the factory." + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "ff1e8934", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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nameaddressgenderage
0Joshua Taylor935 Anderson Lane\\nAguilarmouth, NH 83805male62
1Andrew SmithPSC 3613, Box 7286\\nAPO AP 82138female47
2Melissa Schroeder23917 Mcdonald Path Apt. 242\\nWest Mark, ID 73045male6
3Michael Anderson8132 Horton Avenue Suite 634\\nLake Melissaland...male75
4Nancy Johnson207 Juan Islands Suite 189\\nJaniceside, CT 33016female45
5Amy Rosales15030 Beard Club Apt. 873\\nPort Matthewbury, O...male24
6Dawn Lynch201 Chad Valleys Suite 416\\nEast Dawn, WY 39184female92
7Jenna Davis62813 Kimberly Meadows\\nWest Heatherchester, T...female35
8Bobby Diaz8555 Watkins Brooks Apt. 607\\nSharonmouth, OH ...male65
9Matthew Jones MD57744 Angelica Ramp\\nBrianashire, WV 41784female66
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" + ], + "text/plain": [ + " name address \\\n", + "0 Joshua Taylor 935 Anderson Lane\\nAguilarmouth, NH 83805 \n", + "1 Andrew Smith PSC 3613, Box 7286\\nAPO AP 82138 \n", + "2 Melissa Schroeder 23917 Mcdonald Path Apt. 242\\nWest Mark, ID 73045 \n", + "3 Michael Anderson 8132 Horton Avenue Suite 634\\nLake Melissaland... \n", + "4 Nancy Johnson 207 Juan Islands Suite 189\\nJaniceside, CT 33016 \n", + "5 Amy Rosales 15030 Beard Club Apt. 873\\nPort Matthewbury, O... \n", + "6 Dawn Lynch 201 Chad Valleys Suite 416\\nEast Dawn, WY 39184 \n", + "7 Jenna Davis 62813 Kimberly Meadows\\nWest Heatherchester, T... \n", + "8 Bobby Diaz 8555 Watkins Brooks Apt. 607\\nSharonmouth, OH ... \n", + "9 Matthew Jones MD 57744 Angelica Ramp\\nBrianashire, WV 41784 \n", + "\n", + " gender age \n", + "0 male 62 \n", + "1 female 47 \n", + "2 male 6 \n", + "3 male 75 \n", + "4 female 45 \n", + "5 male 24 \n", + "6 female 92 \n", + "7 female 35 \n", + "8 male 65 \n", + "9 female 66 " + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "from knockoff.sdk.table import KnockoffTable\n", + "from knockoff.sdk.factory.column import ColumnFactory, ChoiceFactory, FakerFactory\n", + "\n", + "\n", + "table = KnockoffTable(\n", + " \"person\",\n", + " columns=[\"name\", \"address\", \"gender\", \"age\"],\n", + " factories=[\n", + " ColumnFactory(\"name\", FakerFactory(\"name\")),\n", + " ColumnFactory(\"address\", FakerFactory(\"address\")),\n", + " ColumnFactory(\"gender\", ChoiceFactory([\"male\", \"female\"])),\n", + " ColumnFactory(\"age\", FakerFactory(\"pyint\", min_value=0, max_value=100)),\n", + " ],\n", + " size=10,\n", + ")\n", + "\n", + "display(table.build())" + ] + }, + { + "cell_type": "markdown", + "id": "73c5a97a", + "metadata": {}, + "source": [ + "If multiple factories provide the same column, the KnockoffTable will apply those in the order provided to the `factories` parameter. I.e. factories towards the end of the list will take precendence. ColumnFactory and CollectionsFactory can declare a dependency on another column which will be provided to the factory as a kwarg. The factory must be provided after the factory that generates the column it depends on in order to do so. Please see the below example as a reference." + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "c61ebfd0", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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nameaddressgenderageother_address
0Heather Chung9509 James Rapidsfemale74Rebeccaborough, OR 73595
1Stephen Hayes188 David Run Suite 795male49New Linda, WA 05108
2Thomas Huerta481 Rivera Fordfemale26Lake Bradview, FL 11180
3Samuel Lawson61652 Amy Road Suite 256female39Markview, WV 39420
4Richard Cummings468 Michael Skywaymale81Kaylafort, OR 85551
5Stephanie Clark0885 Reeves Camp Suite 040male86Dianaland, CO 88542
6David Hahn1123 Hernandez Cornermale61South Toddport, KS 11955
7James Davis674 Monica Dammale84Meganport, IA 84426
8Laura Hunter2304 Marvin Inlet Suite 853female4Olsonchester, TX 69125
9Stephanie Gamble129 Howard Knolls Suite 070female72Gonzalezfort, CT 76785
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" + ], + "text/plain": [ + " name address gender age \\\n", + "0 Heather Chung 9509 James Rapids female 74 \n", + "1 Stephen Hayes 188 David Run Suite 795 male 49 \n", + "2 Thomas Huerta 481 Rivera Ford female 26 \n", + "3 Samuel Lawson 61652 Amy Road Suite 256 female 39 \n", + "4 Richard Cummings 468 Michael Skyway male 81 \n", + "5 Stephanie Clark 0885 Reeves Camp Suite 040 male 86 \n", + "6 David Hahn 1123 Hernandez Corner male 61 \n", + "7 James Davis 674 Monica Dam male 84 \n", + "8 Laura Hunter 2304 Marvin Inlet Suite 853 female 4 \n", + "9 Stephanie Gamble 129 Howard Knolls Suite 070 female 72 \n", + "\n", + " other_address \n", + "0 Rebeccaborough, OR 73595 \n", + "1 New Linda, WA 05108 \n", + "2 Lake Bradview, FL 11180 \n", + "3 Markview, WV 39420 \n", + "4 Kaylafort, OR 85551 \n", + "5 Dianaland, CO 88542 \n", + "6 South Toddport, KS 11955 \n", + "7 Meganport, IA 84426 \n", + "8 Olsonchester, TX 69125 \n", + "9 Gonzalezfort, CT 76785 " + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "\n", + "def split_address(address):\n", + " street_address, other = address.split('\\n')\n", + " return {\n", + " \"address\": street_address,\n", + " \"other_address\": other\n", + " }\n", + " \n", + "table = KnockoffTable(\n", + " \"person\",\n", + " columns=[\"name\", \"address\", \"gender\", \"age\", \"other_address\"],\n", + " factories=[\n", + " ColumnFactory(\"name\", FakerFactory(\"name\")),\n", + " ColumnFactory(\"address\", FakerFactory(\"address\")),\n", + " ColumnFactory(\"gender\", ChoiceFactory([\"male\", \"female\"])),\n", + " ColumnFactory(\"age\", FakerFactory(\"pyint\", min_value=0, max_value=100)),\n", + " # this factory will take the address generated and split into columns\n", + " # including a column that will replace the original address with just\n", + " # the street address\n", + " CollectionsFactory(split_address, depends_on=[\"address\"])\n", + " ],\n", + " size=10,\n", + ")\n", + "\n", + "display(table.build())" + ] + }, + { + "cell_type": "markdown", + "id": "ac391b37", + "metadata": {}, + "source": [ + "### KnockoffUniqueConstraint\n", + "\n", + "Constraints such as the KnockoffUniqueConstraint can be provided to the KnockoffTable to enforce when generating a row. Any generated row must satisfy the unique constraint, otherwise it will be rejected. If `attempt_limit` is reached for trying to generate a row that satisfies all constraints, an `AttemptLimitReached` Error will be thrown. The default `attempt_limit` is 1000000 if `None` is provided in the __init__ of KnockoffTable. " + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "aa972752", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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idname
04Debbie Hill
13Rebecca Bell
25Michael Kelly
32Christine Hernandez
41Stephanie Wright
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" + ], + "text/plain": [ + " id name\n", + "0 4 Debbie Hill\n", + "1 3 Rebecca Bell\n", + "2 5 Michael Kelly\n", + "3 2 Christine Hernandez\n", + "4 1 Stephanie Wright" + ] + }, + "metadata": {}, + "output_type": "display_data" + } + ], + "source": [ + "from knockoff.sdk.constraints import KnockoffUniqueConstraint\n", + "\n", + "table = KnockoffTable(\n", + " \"person\",\n", + " columns=[\"id\", \"name\"],\n", + " factories=[\n", + " ColumnFactory(\"id\", FakerFactory(\"pyint\", min_value=1, max_value=5)),\n", + " ColumnFactory(\"name\", FakerFactory(\"name\"))\n", + " ],\n", + " size=5,\n", + " constraints=[KnockoffUniqueConstraint(['id'])]\n", + ")\n", + "display(table.build())" + ] + }, + { + "cell_type": "markdown", + "id": "0d187718", + "metadata": {}, + "source": [ + "### Autoloading\n", + "\n", + "Using `autoload=True` in the __init__ of KnockoffTable will allow the schema including any unique constraints to be relfected automatically from the database. This setting requires the KnockoffTable instance to be prepared with a `KnockoffDatabaseService` which provides database operations that enables the autoloading. This is done via the KnockoffTable's `prepare` method which takes an optional database service which needs to be called prior to the `build` method. In most cases, the `prepare` and `build` method for the KnockoffTable will be called indirectly by a `KnockoffDB` instance." + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.7.7" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/poetry.lock b/poetry.lock index 73d8f1c..d256342 100644 --- a/poetry.lock +++ b/poetry.lock @@ -54,6 +54,23 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "argon2-cffi" +version = "20.1.0" +description = "The secure Argon2 password hashing algorithm." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +cffi = ">=1.0.0" +six = "*" + +[package.extras] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "wheel", "pre-commit"] +docs = ["sphinx"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] + [[package]] name = "asn1crypto" version = "1.4.0" @@ -62,6 +79,14 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "async-generator" +version = "1.10" +description = "Async generators and context managers for Python 3.5+" +category = "dev" +optional = false +python-versions = ">=3.5" + [[package]] name = "async-timeout" version = "3.0.1" @@ -100,6 +125,19 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "bleach" +version = "3.3.1" +description = "An easy safelist-based HTML-sanitizing tool." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.dependencies] +packaging = "*" +six = ">=1.9.0" +webencodings = "*" + [[package]] name = "botocore" version = "1.20.49" @@ -116,6 +154,17 @@ urllib3 = ">=1.25.4,<1.27" [package.extras] crt = ["awscrt (==0.10.8)"] +[[package]] +name = "cffi" +version = "1.14.6" +description = "Foreign Function Interface for Python calling C code." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +pycparser = "*" + [[package]] name = "chardet" version = "4.0.0" @@ -143,6 +192,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" [package.extras] toml = ["toml"] +[[package]] +name = "debugpy" +version = "1.3.0" +description = "An implementation of the Debug Adapter Protocol for Python" +category = "dev" +optional = false +python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" + [[package]] name = "decorator" version = "4.4.2" @@ -151,6 +208,14 @@ category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*" +[[package]] +name = "defusedxml" +version = "0.7.1" +description = "XML bomb protection for Python stdlib modules" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + [[package]] name = "dependency-injector" version = "4.34.0" @@ -179,6 +244,14 @@ python-versions = "*" [package.dependencies] setuptools_scm = "*" +[[package]] +name = "entrypoints" +version = "0.3" +description = "Discover and load entry points from installed packages." +category = "dev" +optional = false +python-versions = ">=2.7" + [[package]] name = "enum34" version = "1.1.10" @@ -245,7 +318,7 @@ python-versions = ">=3.5" [[package]] name = "importlib-metadata" -version = "4.6.0" +version = "3.10.1" description = "Read metadata from Python packages" category = "main" optional = false @@ -257,8 +330,7 @@ zipp = ">=0.5" [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -perf = ["ipython"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] [[package]] name = "iniconfig" @@ -268,6 +340,27 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "ipykernel" +version = "6.0.2" +description = "IPython Kernel for Jupyter" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +appnope = {version = "*", markers = "platform_system == \"Darwin\""} +debugpy = ">=1.0.0,<2.0" +importlib-metadata = {version = "<4", markers = "python_version < \"3.8.0\""} +ipython = ">=7.23.1,<8.0" +jupyter-client = "<7.0" +matplotlib-inline = ">=0.1.0,<0.2.0" +tornado = ">=4.2,<7.0" +traitlets = ">=4.1.0,<6.0" + +[package.extras] +test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "nose", "ipyparallel"] + [[package]] name = "ipython" version = "7.25.0" @@ -308,6 +401,25 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "ipywidgets" +version = "7.6.3" +description = "IPython HTML widgets for Jupyter" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +ipykernel = ">=4.5.1" +ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""} +jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""} +nbformat = ">=4.2.0" +traitlets = ">=4.3.1" +widgetsnbextension = ">=3.5.0,<3.6.0" + +[package.extras] +test = ["pytest (>=3.6.0)", "pytest-cov", "mock"] + [[package]] name = "jedi" version = "0.18.0" @@ -323,6 +435,20 @@ parso = ">=0.8.0,<0.9.0" qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<6.0.0)"] +[[package]] +name = "jinja2" +version = "3.0.1" +description = "A very fast and expressive template engine." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +MarkupSafe = ">=2.0" + +[package.extras] +i18n = ["Babel (>=2.7)"] + [[package]] name = "jmespath" version = "0.10.0" @@ -339,6 +465,117 @@ category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "jsonschema" +version = "3.2.0" +description = "An implementation of JSON Schema validation for Python" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +attrs = ">=17.4.0" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +pyrsistent = ">=0.14.0" +six = ">=1.11.0" + +[package.extras] +format = ["idna", "jsonpointer (>1.13)", "rfc3987", "strict-rfc3339", "webcolors"] +format_nongpl = ["idna", "jsonpointer (>1.13)", "webcolors", "rfc3986-validator (>0.1.0)", "rfc3339-validator"] + +[[package]] +name = "jupyter" +version = "1.0.0" +description = "Jupyter metapackage. Install all the Jupyter components in one go." +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +ipykernel = "*" +ipywidgets = "*" +jupyter-console = "*" +nbconvert = "*" +notebook = "*" +qtconsole = "*" + +[[package]] +name = "jupyter-client" +version = "6.2.0" +description = "Jupyter protocol implementation and client libraries" +category = "dev" +optional = false +python-versions = ">=3.6.1" + +[package.dependencies] +jupyter-core = ">=4.6.0" +nest-asyncio = ">=1.5" +python-dateutil = ">=2.1" +pyzmq = ">=13" +tornado = ">=4.1" +traitlets = "*" + +[package.extras] +doc = ["sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] +test = ["async-generator", "ipykernel", "ipython", "mock", "pytest-asyncio", "pytest-timeout", "pytest", "mypy", "pre-commit", "jedi (<0.18)"] + +[[package]] +name = "jupyter-console" +version = "6.4.0" +description = "Jupyter terminal console" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +ipykernel = "*" +ipython = "*" +jupyter-client = "*" +prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" +pygments = "*" + +[package.extras] +test = ["pexpect"] + +[[package]] +name = "jupyter-core" +version = "4.7.1" +description = "Jupyter core package. A base package on which Jupyter projects rely." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\""} +traitlets = "*" + +[[package]] +name = "jupyterlab-pygments" +version = "0.1.2" +description = "Pygments theme using JupyterLab CSS variables" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +pygments = ">=2.4.1,<3" + +[[package]] +name = "jupyterlab-widgets" +version = "1.0.0" +description = "A JupyterLab extension." +category = "dev" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "markupsafe" +version = "2.0.1" +description = "Safely add untrusted strings to HTML/XML markup." +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "matplotlib-inline" version = "0.1.2" @@ -350,6 +587,14 @@ python-versions = ">=3.5" [package.dependencies] traitlets = "*" +[[package]] +name = "mistune" +version = "0.8.4" +description = "The fastest markdown parser in pure Python" +category = "dev" +optional = false +python-versions = "*" + [[package]] name = "mock" version = "4.0.3" @@ -382,6 +627,82 @@ category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "nbclient" +version = "0.5.3" +description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." +category = "dev" +optional = false +python-versions = ">=3.6.1" + +[package.dependencies] +async-generator = "*" +jupyter-client = ">=6.1.5" +nbformat = ">=5.0" +nest-asyncio = "*" +traitlets = ">=4.2" + +[package.extras] +dev = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] +sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] +test = ["codecov", "coverage", "ipython", "ipykernel", "ipywidgets", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "tox", "bumpversion", "xmltodict", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)", "black"] + +[[package]] +name = "nbconvert" +version = "6.1.0" +description = "Converting Jupyter Notebooks" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +bleach = "*" +defusedxml = "*" +entrypoints = ">=0.2.2" +jinja2 = ">=2.4" +jupyter-core = "*" +jupyterlab-pygments = "*" +mistune = ">=0.8.1,<2" +nbclient = ">=0.5.0,<0.6.0" +nbformat = ">=4.4" +pandocfilters = ">=1.4.1" +pygments = ">=2.4.1" +testpath = "*" +traitlets = ">=5.0" + +[package.extras] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +serve = ["tornado (>=4.0)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.2)"] +webpdf = ["pyppeteer (==0.2.2)"] + +[[package]] +name = "nbformat" +version = "5.1.3" +description = "The Jupyter Notebook format" +category = "dev" +optional = false +python-versions = ">=3.5" + +[package.dependencies] +ipython-genutils = "*" +jsonschema = ">=2.4,<2.5.0 || >2.5.0" +jupyter-core = "*" +traitlets = ">=4.1" + +[package.extras] +fast = ["fastjsonschema"] +test = ["check-manifest", "fastjsonschema", "testpath", "pytest", "pytest-cov"] + +[[package]] +name = "nest-asyncio" +version = "1.5.1" +description = "Patch asyncio to allow nested event loops" +category = "dev" +optional = false +python-versions = ">=3.5" + [[package]] name = "networkx" version = "2.5.1" @@ -406,6 +727,35 @@ pytest = ["pytest"] pyyaml = ["pyyaml"] scipy = ["scipy"] +[[package]] +name = "notebook" +version = "6.4.0" +description = "A web-based notebook environment for interactive computing" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +argon2-cffi = "*" +ipykernel = "*" +ipython-genutils = "*" +jinja2 = "*" +jupyter-client = ">=5.3.4" +jupyter-core = ">=4.6.1" +nbconvert = "*" +nbformat = "*" +prometheus-client = "*" +pyzmq = ">=17" +Send2Trash = ">=1.5.0" +terminado = ">=0.8.3" +tornado = ">=6.1" +traitlets = ">=4.2.1" + +[package.extras] +docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] +json-logging = ["json-logging"] +test = ["pytest", "coverage", "requests", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] + [[package]] name = "numpy" version = "1.21.0" @@ -441,6 +791,14 @@ pytz = ">=2017.2" [package.extras] test = ["pytest (>=4.0.2)", "pytest-xdist", "hypothesis (>=3.58)"] +[[package]] +name = "pandocfilters" +version = "1.4.3" +description = "Utilities for writing pandoc filters in python" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + [[package]] name = "parso" version = "0.8.2" @@ -508,6 +866,17 @@ importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} [package.extras] dev = ["pre-commit", "tox"] +[[package]] +name = "prometheus-client" +version = "0.11.0" +description = "Python client for the Prometheus monitoring system." +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +twisted = ["twisted"] + [[package]] name = "prompt-toolkit" version = "3.0.19" @@ -565,6 +934,14 @@ python-versions = ">=3.6" [package.dependencies] numpy = ">=1.16.6" +[[package]] +name = "pycparser" +version = "2.20" +description = "C parser in Python" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + [[package]] name = "pygments" version = "2.9.0" @@ -594,6 +971,14 @@ pgdbconn = ">=0.8.0" psycopg2 = ">=2.5" PyYAML = ">=3.10" +[[package]] +name = "pyrsistent" +version = "0.18.0" +description = "Persistent/Functional/Immutable data structures" +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "pytest" version = "6.2.4" @@ -651,6 +1036,22 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "pywin32" +version = "301" +description = "Python for Window Extensions" +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "pywinpty" +version = "1.1.3" +description = "Pseudo terminal support for Windows from Python." +category = "dev" +optional = false +python-versions = ">=3.6" + [[package]] name = "pyyaml" version = "5.4.1" @@ -659,6 +1060,48 @@ category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +[[package]] +name = "pyzmq" +version = "22.1.0" +description = "Python bindings for 0MQ" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +cffi = {version = "*", markers = "implementation_name == \"pypy\""} +py = {version = "*", markers = "implementation_name == \"pypy\""} + +[[package]] +name = "qtconsole" +version = "5.1.1" +description = "Jupyter Qt console" +category = "dev" +optional = false +python-versions = ">= 3.6" + +[package.dependencies] +ipykernel = ">=4.1" +ipython-genutils = "*" +jupyter-client = ">=4.1" +jupyter-core = "*" +pygments = "*" +pyzmq = ">=17.1" +qtpy = "*" +traitlets = "*" + +[package.extras] +doc = ["Sphinx (>=1.3)"] +test = ["flaky", "pytest", "pytest-qt"] + +[[package]] +name = "qtpy" +version = "1.9.0" +description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5, PyQt4 and PySide) and additional custom QWidgets." +category = "dev" +optional = false +python-versions = "*" + [[package]] name = "s3fs" version = "2021.6.1" @@ -686,6 +1129,17 @@ python-versions = ">=3.6" [package.dependencies] asn1crypto = "1.4.0" +[[package]] +name = "send2trash" +version = "1.7.1" +description = "Send file to trash natively under Mac OS X, Windows and Linux." +category = "dev" +optional = false +python-versions = "*" + +[package.extras] +win32 = ["pywin32"] + [[package]] name = "setuptools-scm" version = "6.0.1" @@ -764,6 +1218,22 @@ test_all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "anyjson (>=0 timezone = ["python-dateutil"] url = ["furl (>=0.4.1)"] +[[package]] +name = "terminado" +version = "0.10.1" +description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +ptyprocess = {version = "*", markers = "os_name != \"nt\""} +pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""} +tornado = ">=4" + +[package.extras] +test = ["pytest"] + [[package]] name = "testing.common.database" version = "2.0.3" @@ -790,6 +1260,17 @@ pg8000 = ">=1.10" [package.extras] testing = ["sqlalchemy", "nose", "psycopg2"] +[[package]] +name = "testpath" +version = "0.5.0" +description = "Test utilities for code working with files and commands" +category = "dev" +optional = false +python-versions = ">= 3.5" + +[package.extras] +test = ["pytest", "pathlib2"] + [[package]] name = "text-unidecode" version = "1.3" @@ -806,6 +1287,14 @@ category = "dev" optional 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a/pyproject.toml b/pyproject.toml index aabcf75..04bf0ee 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "knockoff" -version = "4.0.0" +version = "4.1.0" description = "Library for generating and bootstrapping mock data" authors = ["Gregory Yu "] readme = "README.md" @@ -40,6 +40,7 @@ pytest = { version = ">=4.6.9" } more-itertools = { version = "==5.0.0" } mock = { version = ">=3.0.4" } pytest-cov = { version = "~2.12.1" } +jupyter = { version = "~1.0.0" } [tool.poetry.extras] complete = ["Pyrseas"] diff --git a/tests/knockoff/sdk/factory/test_collections.py b/tests/knockoff/sdk/factory/test_collections.py index 120a8b4..477ccf2 100644 --- a/tests/knockoff/sdk/factory/test_collections.py +++ b/tests/knockoff/sdk/factory/test_collections.py @@ -4,12 +4,23 @@ # This source code is licensed under the Apache-2.0 license found in # the LICENSE file in the root directory of this source tree. +import pytest +from unittest import TestCase import pandas as pd -from knockoff.sdk.factory.collections import KnockoffDataFrameFactory +from knockoff.sdk.factory.collections import KnockoffDataFrameFactory, CollectionsFactory from knockoff.sdk.factory.next_strategy.df import cycle_df_factory + +def some_func(): + return { + 'a': 1, + 'b': 2, + 'c': 3 + } + + class TestCollections(object): def test_knockoff_dataframe_factory_cycle(self): @@ -26,3 +37,29 @@ def test_knockoff_dataframe_factory_cycle(self): assert df_expected.equals(df_actual1) assert df_expected.equals(df_actual2) + + @pytest.mark.parametrize("kwargs,expected", + [({}, {'a':1, 'b': 2, 'c':3}), + ({'columns': ['a','c']}, {'a':1, 'c':3}), + ({'rename': {'a':'a1'}}, {'a1':1, 'b': 2, 'c':3}), + ({'drop': ['a','c']}, {'b': 2})] + ) + def test_collections_factory(self, kwargs, expected): + factory = CollectionsFactory(some_func, **kwargs) + actual = factory() + TestCase().assertDictEqual(actual, expected) + + + def test_collections_factory_depends_on(self): + def another_func(x,y): + return { + 'x': x, + 'y': y, + 'z': x+y + } + factory = CollectionsFactory(another_func, depends_on=['x','y']) + actual = factory(x=1,y=2) + TestCase().assertDictEqual(actual, {'x':1,'y':2,'z':3}) + + with pytest.raises(TypeError): + factory()