diff --git a/tests/testthat/test-2-againstCdm.R b/tests/testthat/test-2-againstCdm.R index a0f5609b1..9add55875 100644 --- a/tests/testthat/test-2-againstCdm.R +++ b/tests/testthat/test-2-againstCdm.R @@ -25,7 +25,8 @@ test_that("Cohort diagnostics in incremental mode", { incremental = TRUE, incrementalFolder = file.path(folder, "incremental"), temporalCovariateSettings = temporalCovariateSettings, - runFeatureExtractionOnSample = TRUE + runFeatureExtractionOnSample = TRUE, + minCharacterizationMean = 0.8 ) ) @@ -56,7 +57,8 @@ test_that("Cohort diagnostics in incremental mode", { incremental = TRUE, incrementalFolder = file.path(folder, "incremental"), temporalCovariateSettings = temporalCovariateSettings, - runFeatureExtractionOnSample = TRUE + runFeatureExtractionOnSample = TRUE, + minCharacterizationMean = 0.8 ) ) # generate sqlite file @@ -103,7 +105,8 @@ test_that("Cohort diagnostics in incremental mode", { incremental = FALSE, incrementalFolder = file.path(folder, "incremental"), temporalCovariateSettings = temporalCovariateSettings, - runFeatureExtractionOnSample = TRUE + runFeatureExtractionOnSample = TRUE, + minCharacterizationMean = 0.8 ) }) diff --git a/tests/testthat/test-3-Characterization.R b/tests/testthat/test-3-Characterization.R index 715d31608..6511457d1 100644 --- a/tests/testthat/test-3-Characterization.R +++ b/tests/testthat/test-3-Characterization.R @@ -38,7 +38,8 @@ test_that("Execute and export characterization", { incremental = TRUE, recordKeepingFile = recordKeepingFile, task = "runTemporalCohortCharacterization", - jobName = "Temporal Cohort characterization" + jobName = "Temporal Cohort characterization", + minCharacterizationMean = 0.3 ) # Check all files are created @@ -86,7 +87,8 @@ test_that("Execute and export characterization", { incremental = TRUE, recordKeepingFile = recordKeepingFile, task = "runTemporalCohortCharacterization", - jobName = "Temporal Cohort characterization" + jobName = "Temporal Cohort characterization", + minCharacterizationMean = 0.3 ) # Check no time ids are NA/NULL