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Makefile
executable file
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Makefile
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# -*- makefile -*-
#
# For use with GNU make.
#
#
#----------------------------------------------------------------------------------------------------------------------------------
# Makefile for compiling OpenCMISS library
#
# Original by Chris Bradley adapted from the CMISS Makefile by Karl Tomlinson
# Changes:
#
#----------------------------------------------------------------------------------------------------------------------------------
#
# LICENSE
#
# Version: MPL 1.1/GPL 2.0/LGPL 2.1
#
# The contents of this file are subject to the Mozilla Public License
# Version 1.1 (the "License"); you may not use this file except in
# compliance with the License. You may obtain a copy of the License at
# http://www.mozilla.org/MPL/
#
# Software distributed under the License is distributed on an "AS IS"
# basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
# License for the specific language governing rights and limitations
# under the License.
#
# The Original Code is OpenCMISS
#
# The Initial Developer of the Original Code is University of Auckland,
# Auckland, New Zealand, the University of Oxford, Oxford, United
# Kingdom and King's College, London, United Kingdom. Portions created
# by the University of Auckland, the University of Oxford and King's
# College, London are Copyright (C) 2007-2010 by the University of
# Auckland, the University of Oxford and King's College, London.
# All Rights Reserved.
#
# Contributor(s):
#
# Alternatively, the contents of this file may be used under the terms of
# either the GNU General Public License Version 2 or later (the "GPL"), or
# the GNU Lesser General Public License Version 2.1 or later (the "LGPL"),
# in which case the provisions of the GPL or the LGPL are applicable instead
# of those above. If you wish to allow use of your version of this file only
# under the terms of either the GPL or the LGPL, and not to allow others to
# use your version of this file under the terms of the MPL, indicate your
# decision by deleting the provisions above and replace them with the notice
# and other provisions required by the GPL or the LGPL. If you do not delete
# the provisions above, a recipient may use your version of this file under
# the terms of any one of the MPL, the GPL or the LGPL.
#
#----------------------------------------------------------------------------------------------------------------------------------
MAKEFLAGS = --no-builtin-rules --warn-undefined-variables
#----------------------------------------------------------------------------------------------------------------------------------
ifndef OPENCMISS_ROOT
OPENCMISS_ROOT = $(CURDIR)/../
endif
OC_CM_GLOBAL_ROOT = $(CURDIR)
include $(OC_CM_GLOBAL_ROOT)/utils/MakefileCommon.inc
#----------------------------------------------------------------------------------------------------------------------------------
SOURCE_DIR = $(OC_CM_GLOBAL_ROOT)/src
OBJECT_DIR := $(MAIN_OBJECT_DIR)
BASE_LIB_NAME = OpenCMISS
MODULE_DIR := $(OBJECT_DIR)
MOD_INC_NAME := opencmiss.mod
IRON_MOD_INC_NAME := opencmiss_iron.mod
MOD_INCLUDE := $(INC_DIR)/$(MOD_INC_NAME)
IRON_MOD_INCLUDE := $(INC_DIR)/$(IRON_MOD_INC_NAME)
MOD_SOURCE_INC := $(OBJECT_DIR)/$(MOD_INC_NAME)
IRON_MOD_SOURCE_INC := $(OBJECT_DIR)/$(IRON_MOD_INC_NAME)
HEADER_INC_NAME := opencmiss.h
IRON_HEADER_INC_NAME := iron.h
HEADER_DIR := $(INC_DIR)/opencmiss
HEADER_INCLUDE := $(HEADER_DIR)/$(HEADER_INC_NAME)
IRON_HEADER_INCLUDE := $(HEADER_DIR)/$(IRON_HEADER_INC_NAME)
C_F90_SOURCE := $(SOURCE_DIR)/opencmiss_iron_c.f90
BINDINGS_DIR = $(OC_CM_GLOBAL_ROOT)/bindings
BINDINGS_GENERATE_SCRIPT := $(BINDINGS_DIR)/generate_bindings
LIB_NAME := lib$(BASE_LIB_NAME)$(EXE_ABI_SUFFIX)$(MT_SUFFIX)$(DEBUG_SUFFIX)$(PROF_SUFFIX).a
LIBRARY := $(LIB_DIR)/$(LIB_NAME)
C_INCLUDE_DIRS := $(SOURCE_DIR)
F_INCLUDE_DIRS := $(MODULE_DIR)
CPPFLAGS += $(EXTERNAL_INCLUDE_PATH)
FPPFLAGS += $(EXTERNAL_INCLUDE_PATH)
ELFLAGS += $(EXTERNAL_LIB_PATH)
DLFLAGS += $(EXTERNAL_LIB_PATH)
DLFLAGS += $(EXTERNAL_LIBRARIES)
CPPFLAGS += $(addprefix -I, $(C_INCLUDE_DIRS) )
FPPFLAGS += $(addprefix -I, $(F_INCLUDE_DIRS) )
.SUFFIXES: .f90 .c
main: preliminaries \
$(LIBRARY) \
$(MOD_INCLUDE) \
$(IRON_MOD_INCLUDE) \
$(MOD_FIELDML_TARGET) \
$(IRON_HEADER_INCLUDE) #\
#$(HEADER_INCLUDE)
PREPROCESSED_OBJECTS =
$(OBJECT_DIR)/%.o : $(SOURCE_DIR)/%.f90 $(OBJECT_DIR)/.directory
( cd $(OBJECT_DIR) && $(FC) -o $@ $(FFLAGS) $(FPPFLAGS) -c $< )
$(OBJECT_DIR)/%.o : $(SOURCE_DIR)/%.c $(OBJECT_DIR)/.directory
( cd $(OBJECT_DIR) && $(CC) -o $@ $(CFLAGS) $(CPPFLAGS) -c $< )
$(PREPROCESSED_OBJECTS) : $(OBJECT_DIR)/%.o : $(SOURCE_DIR)/%.f90 $(OBJECT_DIR)/.directory
( m4 --prefix-builtins $< > $(subst .o,-expanded.f90,$@) && cd $(OBJECT_DIR) && $(FC) -o $@ $(FFLAGS) $(FPPFLAGS) -c $(subst .o,-expanded.f90,$@) )
# Target to create directories (but as the changing mTime of directories confuses make, we create a hidden file in it and reference it instead of the directory)
%/.directory:
( mkdir -p $(@D) && touch $@ )
ifeq ($(USEFIELDML),true)
FIELDML_OBJECT = \
$(OBJECT_DIR)/fieldml_util_routines.o \
$(OBJECT_DIR)/fieldml_input_routines.o \
$(OBJECT_DIR)/fieldml_output_routines.o \
$(OBJECT_DIR)/fieldml_types.o
else
FIELDML_OBJECT = #
endif
#ifeq ($(COMPILER),intel) # TODO: temporarily disable intel build for opencmiss.f90 and etc.
# FIELDML_OBJECT = #
# MOD_INCLUDE := #
# MOD_SOURCE_INC := #
# MOD_FIELDML_TARGET := #
# WRAPPER_OBJECTS = #
#else
WRAPPER_OBJECTS = \
$(OBJECT_DIR)/opencmiss.o \
$(OBJECT_DIR)/opencmiss_iron.o \
$(OBJECT_DIR)/opencmiss_iron_c.o
#endif
OBJECTS = $(OBJECT_DIR)/advection_equation_routines.o \
$(OBJECT_DIR)/advection_diffusion_equation_routines.o \
$(OBJECT_DIR)/analytic_analysis_routines.o \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/basis_routines.o \
$(OBJECT_DIR)/bioelectric_routines.o \
$(OBJECT_DIR)/biodomain_equation_routines.o \
$(OBJECT_DIR)/boundary_condition_routines.o \
$(OBJECT_DIR)/blas.o \
$(OBJECT_DIR)/Burgers_equation_routines.o \
$(OBJECT_DIR)/characteristic_equation_routines.o \
$(OBJECT_DIR)/classical_field_routines.o \
$(OBJECT_DIR)/cmiss.o \
$(OBJECT_DIR)/cmiss_c.o \
$(OBJECT_DIR)/cmiss_cellml.o \
$(OBJECT_DIR)/cmiss_fortran_c.o \
$(OBJECT_DIR)/cmiss_mpi.o \
$(OBJECT_DIR)/cmiss_parmetis.o \
$(OBJECT_DIR)/cmiss_petsc.o \
$(OBJECT_DIR)/cmiss_petsc_types.o \
$(OBJECT_DIR)/computational_environment.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/control_loop_routines.o \
$(OBJECT_DIR)/coordinate_routines.o \
$(OBJECT_DIR)/Darcy_equations_routines.o \
$(OBJECT_DIR)/Darcy_pressure_equations_routines.o \
$(OBJECT_DIR)/finite_elasticity_Darcy_routines.o \
$(OBJECT_DIR)/finite_elasticity_fluid_pressure_routines.o \
$(OBJECT_DIR)/fsi_routines.o \
$(OBJECT_DIR)/bioelectric_finite_elasticity_routines.o \
$(OBJECT_DIR)/data_point_routines.o \
$(OBJECT_DIR)/data_projection_routines.o \
$(OBJECT_DIR)/diffusion_advection_diffusion_routines.o \
$(OBJECT_DIR)/diffusion_diffusion_routines.o \
$(OBJECT_DIR)/diffusion_equation_routines.o \
$(OBJECT_DIR)/distributed_matrix_vector.o \
$(OBJECT_DIR)/distributed_matrix_vector_IO.o \
$(OBJECT_DIR)/domain_mappings.o \
$(OBJECT_DIR)/elasticity_routines.o \
$(OBJECT_DIR)/electromechanics_routines.o \
$(OBJECT_DIR)/electrophysiology_cell_routines.o \
$(OBJECT_DIR)/equations_routines.o \
$(OBJECT_DIR)/equations_mapping_routines.o \
$(OBJECT_DIR)/equations_matrices_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/equations_set_routines.o \
$(OBJECT_DIR)/external_dae_solver_routines.o \
$(OBJECT_DIR)/field_routines.o \
$(OBJECT_DIR)/field_IO_routines.o \
$(OBJECT_DIR)/finite_elasticity_routines.o \
$(OBJECT_DIR)/fluid_mechanics_routines.o \
$(OBJECT_DIR)/fluid_mechanics_IO_routines.o \
$(OBJECT_DIR)/FieldExport.o \
$(OBJECT_DIR)/fitting_routines.o \
$(OBJECT_DIR)/generated_mesh_routines.o \
$(OBJECT_DIR)/Hamilton_Jacobi_equations_routines.o \
$(OBJECT_DIR)/Helmholtz_equations_routines.o \
$(OBJECT_DIR)/history_routines.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/interface_routines.o \
$(OBJECT_DIR)/interface_conditions_routines.o \
$(OBJECT_DIR)/interface_conditions_constants.o \
$(OBJECT_DIR)/interface_equations_routines.o \
$(OBJECT_DIR)/interface_mapping_routines.o \
$(OBJECT_DIR)/interface_matrices_constants.o \
$(OBJECT_DIR)/interface_matrices_routines.o \
$(OBJECT_DIR)/interface_operators_routines.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/lapack.o \
$(OBJECT_DIR)/Laplace_equations_routines.o \
$(OBJECT_DIR)/linear_elasticity_routines.o \
$(OBJECT_DIR)/linkedlist_routines.o \
$(OBJECT_DIR)/lists.o \
$(OBJECT_DIR)/maths.o \
$(OBJECT_DIR)/matrix_vector.o \
$(OBJECT_DIR)/mesh_routines.o \
$(OBJECT_DIR)/monodomain_equations_routines.o \
$(OBJECT_DIR)/multi_compartment_transport_routines.o \
$(OBJECT_DIR)/multi_physics_routines.o \
$(OBJECT_DIR)/Navier_Stokes_equations_routines.o \
$(OBJECT_DIR)/node_routines.o \
$(WRAPPER_OBJECTS) \
$(OBJECT_DIR)/Poiseuille_equations_routines.o \
$(OBJECT_DIR)/Poisson_equations_routines.o \
$(OBJECT_DIR)/problem_constants.o \
$(OBJECT_DIR)/problem_routines.o \
$(OBJECT_DIR)/reaction_diffusion_equation_routines.o \
$(OBJECT_DIR)/reaction_diffusion_IO_routines.o \
$(OBJECT_DIR)/region_routines.o \
$(OBJECT_DIR)/Stokes_equations_routines.o \
$(OBJECT_DIR)/solver_routines.o \
$(OBJECT_DIR)/solver_mapping_routines.o \
$(OBJECT_DIR)/solver_matrices_routines.o \
$(OBJECT_DIR)/sorting.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/stree_equation_routines.o \
$(OBJECT_DIR)/test_framework_routines.o \
$(OBJECT_DIR)/timer_c.o \
$(OBJECT_DIR)/timer_f.o \
$(OBJECT_DIR)/trees.o \
$(OBJECT_DIR)/types.o \
$(OBJECT_DIR)/util_array.o \
$(FIELDML_OBJECT) \
$(PREPROCESSED_OBJECTS)
ifeq ($(OPERATING_SYSTEM),linux)# Linux
MACHINE_OBJECTS = $(OBJECT_DIR)/machine_constants_linux.o
else
ifeq ($(OPERATING_SYSTEM),aix)# AIX
MACHINE_OBJECTS = $(OBJECT_DIR)/machine_constants_aix.o
else# windows
MACHINE_OBJECTS = $(OBJECT_DIR)/machine_constants_win32.o
endif
endif
OBJECTS += $(MACHINE_OBJECTS)
preliminaries: $(OBJECT_DIR)/.directory \
$(INC_DIR)/.directory \
$(LIB_DIR)/.directory
$(LIBRARY) : $(OBJECTS) $(LIB_DIR)/.directory
$(AR) $(ARFLAGS) $@ $(OBJECTS)
$(MOD_INCLUDE) : $(MOD_SOURCE_INC) $(INC_DIR)/.directory
cp $(MOD_SOURCE_INC) $@
$(IRON_MOD_INCLUDE) : $(IRON_MOD_SOURCE_INC) $(INC_DIR)/.directory
cp $(IRON_MOD_SOURCE_INC) $@
MOD_FIELDML: $(FIELDML_OBJECT) $(INC_DIR)/.directory
cp $(OBJECT_DIR)/fieldml_input_routines.mod $(INC_DIR)/fieldml_input_routines.mod
cp $(OBJECT_DIR)/fieldml_output_routines.mod $(INC_DIR)/fieldml_output_routines.mod
cp $(OBJECT_DIR)/fieldml_util_routines.mod $(INC_DIR)/fieldml_util_routines.mod
cp $(OBJECT_DIR)/fieldml_types.mod $(INC_DIR)/fieldml_types.mod
#$(HEADER_INCLUDE) $(C_F90_SOURCE): $(SOURCE_DIR)/opencmiss_iron.f90 $(BINDINGS_GENERATE_SCRIPT)/parse.py $(BINDINGS_GENERATE_SCRIPT)/c.py $(HEADER_DIR)/.directory
# python $(BINDINGS_GENERATE_SCRIPT) $(OC_CM_GLOBAL_ROOT) C $(HEADER_INCLUDE) $(C_F90_SOURCE)
$(IRON_HEADER_INCLUDE) $(C_F90_SOURCE): $(SOURCE_DIR)/opencmiss_iron.f90 $(BINDINGS_GENERATE_SCRIPT)/parse.py $(BINDINGS_GENERATE_SCRIPT)/c.py $(HEADER_DIR)/.directory
python $(BINDINGS_GENERATE_SCRIPT) $(OC_CM_GLOBAL_ROOT) C $(IRON_HEADER_INCLUDE) $(C_F90_SOURCE)
# Place the list of dependencies for the objects here.
#
# ----------------------------------------------------------------------------
ifeq ($(OPERATING_SYSTEM),aix)
#Need to disable argument list checking for MPI calls which may have multiple types for the same parameters
$(OBJECT_DIR)/computational_environment.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
$(OBJECT_DIR)/distributed_matrix_vector.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
$(OBJECT_DIR)/field_IO_routines.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
$(OBJECT_DIR)/analytic_analysis_routines.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
$(OBJECT_DIR)/data_projection_routines.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
#Need to disable argument list checking for c interface modules to allow for the c->fortran char->integer string conversion
$(OBJECT_DIR)/timer_c.o : DBGCF_FLGS = -qfullpath -C -qflttrap=inv:en
#Need to to auto-promote single precision constants to doubles
$(OBJECT_DIR)/finite_elasticity_routines.o : DBGCF_FLGS = -qdpc
endif
$(OBJECT_DIR)/advection_equation_routines.o : $(SOURCE_DIR)/advection_equation_routines.f90 \
$(OBJECT_DIR)/analytic_analysis_routines.o \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/basis_routines.o \
$(OBJECT_DIR)/boundary_condition_routines.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/control_loop_routines.o \
$(OBJECT_DIR)/distributed_matrix_vector.o \
$(OBJECT_DIR)/domain_mappings.o \
$(OBJECT_DIR)/equations_mapping_routines.o \
$(OBJECT_DIR)/equations_matrices_routines.o \
$(OBJECT_DIR)/equations_routines.o \
$(OBJECT_DIR)/equations_set_constants.o \
$(OBJECT_DIR)/field_routines.o \
$(OBJECT_DIR)/fluid_mechanics_IO_routines.o \
$(OBJECT_DIR)/input_output.o \
$(OBJECT_DIR)/iso_varying_string.o \
$(OBJECT_DIR)/kinds.o \
$(OBJECT_DIR)/matrix_vector.o \
$(OBJECT_DIR)/problem_constants.o \
$(OBJECT_DIR)/solver_routines.o \
$(OBJECT_DIR)/strings.o \
$(OBJECT_DIR)/timer_f.o \
$(OBJECT_DIR)/types.o
$(OBJECT_DIR)/advection_diffusion_equation_routines.o : $(SOURCE_DIR)/advection_diffusion_equation_routines.f90 \
$(OBJECT_DIR)/analytic_analysis_routines.o \
$(OBJECT_DIR)/base_routines.o \
$(OBJECT_DIR)/basis_routines.o \
$(OBJECT_DIR)/boundary_condition_routines.o \
$(OBJECT_DIR)/constants.o \
$(OBJECT_DIR)/control_loop_routines.o \
$(OBJECT_DIR)/distributed_matrix_vector.o \
$(OBJECT_DIR)/domain_mappings.o \
$(OBJECT_DIR)/equations_mapping_routines.o \
$(OBJECT_DIR)/equations_matrices_routines.o \
$(OBJECT_DIR)/equations_routines.o \
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