From 981f80b662258c87d2eea94422d89dc691b5dc43 Mon Sep 17 00:00:00 2001 From: Ryan Routsong Date: Tue, 12 Dec 2023 12:36:38 -0700 Subject: [PATCH] fix: singularity link --- README.md | 2 +- docs/index.md | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 96ec2c9..01c7865 100644 --- a/README.md +++ b/README.md @@ -23,7 +23,7 @@ The **`./weave`** pipeline is composed of two sub commands to setup and run the > [weave **cache**](https://openomics.github.io/weave/usage/cache/) > Downloads the reference files for the pipeline to a selected directory. -**weave** is a two-pronged pipeline; the first prong detects and uses the appropriate illumnia software to demultiplex the ensemble collection of reads into their individual samples and converts the sequencing information into the FASTQ file format. From there out the second prong is a distrubted parallele step that uses a variety of commonly accepting nextgen sequencing tools to report, visualize, and calculate the quality of the reads after sequencing. **weave** makes uses of the ubiquitous containerization software (singularity)[https://sylabs.io/]2 for modularity, and the robust pipelining DSL [Snakemake](https://snakemake.github.io/)3 +**weave** is a two-pronged pipeline; the first prong detects and uses the appropriate illumnia software to demultiplex the ensemble collection of reads into their individual samples and converts the sequencing information into the FASTQ file format. From there out the second prong is a distrubted parallele step that uses a variety of commonly accepting nextgen sequencing tools to report, visualize, and calculate the quality of the reads after sequencing. **weave** makes uses of the ubiquitous containerization software singularity2 for modularity, and the robust pipelining DSL [Snakemake](https://snakemake.github.io/)3 **weave** common use is to gauge the qualtiy of reads for potential downstream analysis. Since bioinformatic analysis requires robust and accurate data to draw scientific conclusions, this helps save time and resources when it comes to analyzing the volumous amount of sequencing data that is collected routinely. diff --git a/docs/index.md b/docs/index.md index 6bbc464..be51720 100644 --- a/docs/index.md +++ b/docs/index.md @@ -44,7 +44,7 @@ The **`./weave`** pipeline is composed of two sub commands to setup and run the -**weave** is a two-pronged pipeline; the first prong detects and uses the appropriate illumnia software to demultiplex the ensemble collection of reads into their individual samples and converts the sequencing information into the FASTQ file format. From there out the second prong is a distrubted parallele step that uses a variety of commonly accepting nextgen sequencing tools to report, visualize, and calculate the quality of the reads after sequencing. **weave** makes uses of the ubiquitous containerization software (singularity)[https://sylabs.io/]2 for modularity, and the robust pipelining DSL [Snakemake](https://snakemake.github.io/)3 +**weave** is a two-pronged pipeline; the first prong detects and uses the appropriate illumnia software to demultiplex the ensemble collection of reads into their individual samples and converts the sequencing information into the FASTQ file format. From there out the second prong is a distrubted parallele step that uses a variety of commonly accepting nextgen sequencing tools to report, visualize, and calculate the quality of the reads after sequencing. **weave** makes uses of the ubiquitous containerization software singularity2 for modularity, and the robust pipelining DSL [Snakemake](https://snakemake.github.io/)3 **weave** common use is to gauge the qualtiy of reads for potential downstream analysis. Since bioinformatic analysis requires robust and accurate data to draw scientific conclusions, this helps save time and resources when it comes to analyzing the volumous amount of sequencing data that is collected routinely.