diff --git a/input/cql/KenyaEMRStratifiers.cql b/input/cql/KenyaEMRStratifiers.cql index a6cddc568..fd8bcec5a 100644 --- a/input/cql/KenyaEMRStratifiers.cql +++ b/input/cql/KenyaEMRStratifiers.cql @@ -8,85 +8,33 @@ include FHIRCommon version '4.0.1' called FC include KenyaEMRConcepts called Cx -// ISO-8601-Derived Periods -// PEPFAR programs are required to report on the following standard age groups: -// <1, 1-4, 5-9, 10-14, 15-19, 20-24, 25-29, 30-34, 35-39, 40-44, 45-49, and 50+. -codesystem "ISO-8601-Derived Periods": 'http://ohie.org/CodeSystem/iso-8601-derived-periods' // { 'P0Y--P1Y', 'P1Y--P5Y', ... } -code "P0Y--P1Y": 'P0Y--P1Y' from "ISO-8601-Derived Periods" display '< 1 year' -code "P1Y--P5Y": 'P1Y--P5Y' from "ISO-8601-Derived Periods" display '1-4 years' -code "P5Y--P10Y": 'P5Y--P10Y' from "ISO-8601-Derived Periods" display '5-9 year' -code "P10Y--P15Y": 'P10Y--P15Y' from "ISO-8601-Derived Periods" display '10-14 year' -code "P15Y--P20Y": 'P15Y--P20Y' from "ISO-8601-Derived Periods" display '15-19 year' -code "P20Y--P25Y": 'P20Y--P25Y' from "ISO-8601-Derived Periods" display '20-24 year' -code "P25Y--P30Y": 'P25Y--P30Y' from "ISO-8601-Derived Periods" display '25-29 year' -code "P30Y--P35Y": 'P30Y--P35Y' from "ISO-8601-Derived Periods" display '30-34 year' -code "P35Y--P40Y": 'P35Y--P40Y' from "ISO-8601-Derived Periods" display '35-39 year' -code "P40Y--P45Y": 'P40Y--P45Y' from "ISO-8601-Derived Periods" display '40-45 year' -code "P45Y--P50Y": 'P45Y--P50Y' from "ISO-8601-Derived Periods" display '45-50 year' -code "P50Y--P9999Y": 'P50Y--P9999Y' from "ISO-8601-Derived Periods" display '50+ years' -// Starting in FY22, the age bands for TX_CURR will be expanded to 50-54, 55-59, 60-64, and 65+ -code "P50Y--P55Y": 'P50Y--P55Y' from "ISO-8601-Derived Periods" display '50-55 year' -code "P55Y--P60Y": 'P50Y--P60Y' from "ISO-8601-Derived Periods" display '55-60 year' -code "P60Y--P65Y": 'P50Y--P60Y' from "ISO-8601-Derived Periods" display '60-65 year' -code "P65Y--P9999Y": 'P50Y--P9999Y' from "ISO-8601-Derived Periods" display '65+ years' - - -parameter "Measurement Period" Interval default Interval[@1990-01-01T00:00:00.0, @2022-08-30T00:00:00.0] - -// Not included yet: Key Population Type [Required] -// People who inject drugs (PWID) -// Men who have sex with men (MSM) -// Transgender people (TG) -// Female sex workers (FSW) -// People in prison and other closed settings +codesystem "KEMR Periods": 'http://ohie.org/CodeSystem/kemr-periods' +code "<1": '<1' from "KEMR Periods" display '<1' +code "1-9": '1-9' from "KEMR Periods" display '1-9' +code "10-14": '10-14' from "KEMR Periods" display '10-14' +code "15-19": '15-19' from "KEMR Periods" display '15-19' +code "20-24": '20-24' from "KEMR Periods" display '20-24' +code "25+": '25+' from "KEMR Periods" display '25+' + + +parameter "Measurement Period" Interval default Interval[@2023-04-01T00:00:00.0, @2023-06-30T00:00:00.0] context Patient -// unknown and other is included in fhir core patient -// mer guidance requires m, f, unknown, kenya emr uses only mf define "Sex": Patient.gender.value -// Age Group define "Age Group": case - // age at start of measurement period or end of it? - when AgeInYearsAt(start of "Measurement Period") in Interval[0, 1) then "P0Y--P1Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[1, 5) then "P1Y--P5Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[5, 10) then "P5Y--P10Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[10, 15) then "P10Y--P15Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[15, 20) then "P15Y--P20Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[20, 25) then "P20Y--P25Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[25, 30) then "P25Y--P30Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[30, 35) then "P30Y--P35Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[35, 40) then "P35Y--P40Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[40, 45) then "P40Y--P45Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[45, 50) then "P45Y--P50Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[50, null] then "P50Y--P9999Y" - else null - end - - -define "Age Group TXCURR": - case - when AgeInYearsAt(start of "Measurement Period") in Interval[0, 1) then "P0Y--P1Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[1, 5) then "P1Y--P5Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[5, 10) then "P5Y--P10Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[10, 15) then "P10Y--P15Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[15, 20) then "P15Y--P20Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[20, 25) then "P20Y--P25Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[25, 30) then "P25Y--P30Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[30, 35) then "P30Y--P35Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[35, 40) then "P35Y--P40Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[40, 45) then "P40Y--P45Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[45, 50) then "P45Y--P50Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[50, 55) then "P50Y--P55Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[55, 60) then "P55Y--P60Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[60, 65) then "P60Y--P65Y" - when AgeInYearsAt(start of "Measurement Period") in Interval[65, null] then "P65Y--P9999Y" + when AgeInYearsAt(start of "Measurement Period") in Interval[0, 1) then "<1" + when AgeInYearsAt(start of "Measurement Period") in Interval[1, 9) then "1-9" + when AgeInYearsAt(start of "Measurement Period") in Interval[10, 14) then "10-14" + when AgeInYearsAt(start of "Measurement Period") in Interval[15, 19) then "15-19" + when AgeInYearsAt(start of "Measurement Period") in Interval[20, 24) then "20-24" + when AgeInYearsAt(start of "Measurement Period") in Interval[25, null] then "25+" else null end @@ -103,17 +51,18 @@ define "Last Location": ) +// http://fhir.openmrs.org/ext/patient/identifier#location + define "OpenMRS Location": [Patient] P // this url is in the ig, but is not correct: 'http://fhir.openmrs.org/core/StructureDefinition/omrs-patient-identifier-location'} where singleton from {P.identifier.extension[0].url ~ 'http://fhir.openmrs.org/ext/patient/identifier'} or singleton from {P.identifier.extension[0].url ~ 'http://fhir.openmrs.org/ext/patient/identifier#location'} - or singleton from {P.identifier.extension[1].url ~ 'http://fhir.openmrs.org/ext/patient/identifier'} - or singleton from {P.identifier.extension[1].url ~ 'http://fhir.openmrs.org/ext/patient/identifier#location'} + // or singleton from {P.identifier.extension[1].url ~ 'http://fhir.openmrs.org/ext/patient/identifier'} + // or singleton from {P.identifier.extension[1].url ~ 'http://fhir.openmrs.org/ext/patient/identifier#location'} return singleton from {P.identifier.extension[0].value.reference.value} - define "Last serviceProvider": // Some of the Synthea encounters do not have a serviceProvider, so this can return nothing // Filter out those that are null, then take the last @@ -123,32 +72,36 @@ define "Last serviceProvider": // if..then..else -define "Location": +define "Location Deux": if "Last Location" is not null then ("Last Location") - // else "Last serviceProvider" - else - if "Last serviceProvider" is not null then "Last serviceProvider" - else - if "OpenMRS Location" is not null then ("OpenMRS Location") + else if "Last serviceProvider" is not null then ("Last serviceProvider") + else if "OpenMRS Location" is not null then ("OpenMRS Location") else null -// case switch does not work -define "Location Case Switch": +define "Location": case // location identifier on patient when "OpenMRS Location" is not null then ("OpenMRS Location") // then location of last encounter when "Last Location" is not null then ("Last Location") // then organization of last encounter - else "Last serviceProvider" + when "Last serviceProvider" is not null then ("Last serviceProvider") + else null end +define "Debug location": + Combine({ "Location", "Sex"}, ':') + + define "Age Group/Sex/Location": - "Age Group".code + ':' + "Sex" + ':' + "Location" + "Age Group".code & ':' & "Sex" & ':' & "Location" define "Age Group/Sex/Location TXCURR": - "Age Group TXCURR".code + ':' + "Sex" + ':' + "Location" + "Age Group".code + ':' + "Sex" + ':' + "Location" + +define "Age Group/Sex/Location Case Switch": + "Age Group".code + ':' + "Sex" + ':' + "Location" diff --git a/input/cql/KenyaEMRTXCURR.cql b/input/cql/KenyaEMRTXCURR.cql index 221805b72..77a55c563 100644 --- a/input/cql/KenyaEMRTXCURR.cql +++ b/input/cql/KenyaEMRTXCURR.cql @@ -262,7 +262,7 @@ define "OpenMRS Location": define "Stratification": - Stratifiers."Age Group/Sex/Location TXCURR" + Stratifiers."Age Group/Sex" -define "Stratifier": "Stratification" +// define "Stratifier": "Stratification" diff --git a/input/tests/KenyaEMRStratifiers/3e990510-1d51-4a25-abd4-3885cf9e8be9/FHIR_Output_kemr.json b/input/tests/KenyaEMRStratifiers/3e990510-1d51-4a25-abd4-3885cf9e8be9/FHIR_Output_kemr.json new file mode 100644 index 000000000..65173de6c --- /dev/null +++ b/input/tests/KenyaEMRStratifiers/3e990510-1d51-4a25-abd4-3885cf9e8be9/FHIR_Output_kemr.json @@ -0,0 +1,304 @@ +{ + "resourceType": "Bundle", + "entry": [ { + "resource": { + "resourceType": "Patient", + "id": "3e990510-1d51-4a25-abd4-3885cf9e8be9", + "meta": { + "lastUpdated": "2023-05-22T09:19:47.000+03:00" + }, + "identifier": [ { + "id": "3196030c-ca05-4f66-8e47-e3251ef1b1a0", + "extension": [ { + "url": "http://fhir.openmrs.org/ext/patient/identifier#location", + "valueReference": { + "reference": "Location/807b5afd-579c-422f-abd2-96d497235a7d", + "type": "Location", + "display": "Lumumba Sub County Hospital" + } + } ], + "use": "official", + "type": { + "coding": [ { + "code": "dfacd928-0370-4315-99d7-6ec1c9f7ae76" + } ], + "text": "OpenMRS ID" + }, + "value": "MK3JYU" + }, { + "id": "8a517664-6531-4c10-b64b-0137192a3e30", + "extension": [ { + "url": "http://fhir.openmrs.org/ext/patient/identifier#location", + "valueReference": { + "reference": "Location/807b5afd-579c-422f-abd2-96d497235a7d", + "type": "Location", + "display": "Lumumba Sub County Hospital" + } + } ], + "use": "usual", + "type": { + "coding": [ { + "code": "49af6cdc-7968-4abb-bf46-de10d7f4859f" + } ], + "text": "National ID" + }, + "value": "20981456" + }, { + "id": "219d9836-acd4-425f-afec-1f1beaf29e43", + "extension": [ { + "url": "http://fhir.openmrs.org/ext/patient/identifier#location", + "valueReference": { + "reference": "Location/807b5afd-579c-422f-abd2-96d497235a7d", + "type": "Location", + "display": "Lumumba Sub County Hospital" + } + } ], + "use": "usual", + "type": { + "coding": [ { + "code": "05ee9cf4-7242-4a17-b4d4-00f707265c8a" + } ], + "text": "Unique Patient Number" + }, + "value": "1373821796" + }, { + "id": "ca797003-7714-4829-bf98-943696e84d79", + "extension": [ { + "url": "http://fhir.openmrs.org/ext/patient/identifier#location", + "valueReference": { + "reference": "Location/807b5afd-579c-422f-abd2-96d497235a7d", + "type": "Location", + "display": "Lumumba Sub County Hospital" + } + } ], + "use": "usual", + "type": { + "coding": [ { + "code": "b4d66522-11fc-45c7-83e3-39a1af21ae0d" + } ], + "text": "Patient Clinic Number" + }, + "value": "21796" + }, { + "id": "f80556fe-fe18-4fde-bd93-a9a054012308", + "extension": [ { + "url": "http://fhir.openmrs.org/ext/patient/identifier#location", + "valueReference": { + "reference": "Location/807b5afd-579c-422f-abd2-96d497235a7d", + "type": "Location", + "display": "Lumumba Sub County Hospital" + } + } ], + "use": "usual", + "type": { + "coding": [ { + "code": "f85081e2-b4be-4e48-b3a4-7994b69bb101" + } ], + "text": "National Unique patient identifier" + }, + "value": "MOHEJ9VG3KGJ1" + } ], + "active": true, + "name": [ { + "id": "bf2968dd-b45f-436e-9d9c-55c46ba3fb14", + "family": "Musamia", + "given": [ "Musamia", "Musamia" ] + } ], + "gender": "male", + "birthDate": "1977", + "deceasedBoolean": false, + "address": [ { + "id": "692e88a0-f844-4f9f-a2b3-f90bac6c430a", + "extension": [ { + "url": "http://fhir.openmrs.org/ext/address", + "extension": [ { + "url": "http://fhir.openmrs.org/ext/address#address1", + "valueString": "39857 address1" + }, { + "url": "http://fhir.openmrs.org/ext/address#address2", + "valueString": "39857 address2" + }, { + "url": "http://fhir.openmrs.org/ext/address#address4", + "valueString": "Manyatta B" + } ] + } ], + "use": "home", + "city": "kolwa central", + "district": "Kisumu", + "state": "Kisumu East" + } ] + }, + "request": { + "method": "PUT", + "url": "Patient" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "455f8701-aaad-4f85-b59a-1bf75d2c36ac", + "meta": { + "lastUpdated": "2023-05-18T16:28:53.000+03:00" + }, + "status": "final", + "code": { + "coding": [ { + "code": "160540AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", + "display": "Method of enrollment" + }, { + "system": "https://openconceptlab.org/orgs/CIEL/sources/CIEL", + "code": "160540", + "display": "Method of enrollment" + }, { + "system": "http://loinc.org", + "code": "45252-4", + "display": "Method of enrollment" + } ], + "text": "Method of enrollment" + }, + "subject": { + "reference": "Patient/3e990510-1d51-4a25-abd4-3885cf9e8be9", + "type": "Patient", + "display": "Musamia Musamia Musamia (OpenMRS ID: MK3JYU)" + }, + "encounter": { + "reference": "Encounter/0fc09b3f-6a41-4da3-be19-c0479ef4fa28", + "type": "Encounter" + }, + "effectiveDateTime": "2023-05-18T16:27:52+03:00", + "issued": "2023-05-18T16:28:53.000+03:00", + "valueCodeableConcept": { + "coding": [ { + "code": "160542AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", + "display": "Outpatient department" + }, { + "system": "https://openconceptlab.org/orgs/CIEL/sources/CIEL", + "code": "160542", + "display": "Outpatient department" + }, { + "system": "http://snomed.info/sct", + "code": "33022008", + "display": "Outpatient department" + } ], + "text": "Outpatient department" + } + }, + "request": { + "method": "POST", + "url": "Observation" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "10a95d01-efa0-4a0e-a032-022db3b87ddc", + "meta": { + "lastUpdated": "2023-05-18T16:34:10.000+03:00" + }, + "status": "final", + "code": { + "coding": [ { + "code": "1193AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", + "display": "CURRENT DRUGS USED" + }, { + "system": "https://openconceptlab.org/orgs/CIEL/sources/CIEL", + "code": "1193", + "display": "CURRENT DRUGS USED" + } ], + "text": "CURRENT DRUGS USED" + }, + "subject": { + "reference": "Patient/3e990510-1d51-4a25-abd4-3885cf9e8be9", + "type": "Patient", + "display": "Musamia Musamia Musamia (OpenMRS ID: MK3JYU)" + }, + "encounter": { + "reference": "Encounter/54d2e662-0168-4546-9895-c1850b3e535d", + "type": "Encounter" + }, + "effectiveDateTime": "2023-05-18T00:00:00+03:00", + "issued": "2023-05-18T16:34:10.000+03:00", + "valueCodeableConcept": { + "coding": [ { + "code": "9fb85385-b4fb-468c-b7c1-22f75834b4b0", + "display": "Tenofovir / Lamivudine / Dolutegravir" + } ], + "text": "Tenofovir / Lamivudine / Dolutegravir" + } + }, + "request": { + "method": "POST", + "url": "Observation" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "750babe9-f061-432e-b11b-6c14e702ebd4", + "meta": { + "lastUpdated": "2023-05-22T09:10:17.000+03:00" + }, + "status": "final", + "code": { + "coding": [ { + "code": "5096AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", + "display": "RETURN VISIT DATE" + }, { + "system": "https://openconceptlab.org/orgs/CIEL/sources/CIEL", + "code": "5096", + "display": "RETURN VISIT DATE" + } ], + "text": "RETURN VISIT DATE" + }, + "subject": { + "reference": "Patient/3e990510-1d51-4a25-abd4-3885cf9e8be9", + "type": "Patient", + "display": "Musamia Musamia Musamia (OpenMRS ID: MK3JYU)" + }, + "encounter": { + "reference": "Encounter/e3c73712-99ba-4380-97f6-78dc59c35044", + "type": "Encounter" + }, + "effectiveDateTime": "2023-05-18T12:33:08+03:00", + "issued": "2023-05-22T09:10:17.000+03:00", + "valueDateTime": "2023-05-31T00:00:00+03:00" + }, + "request": { + "method": "POST", + "url": "Observation" + } + }, { + "resource": { + "resourceType": "Observation", + "id": "67e881f8-212f-4332-b085-ceaa052b3b62", + "meta": { + "lastUpdated": "2023-05-31T08:37:59.000+03:00" + }, + "status": "final", + "code": { + "coding": [ { + "code": "5096AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", + "display": "RETURN VISIT DATE" + }, { + "system": "https://openconceptlab.org/orgs/CIEL/sources/CIEL", + "code": "5096", + "display": "RETURN VISIT DATE" + } ], + "text": "RETURN VISIT DATE" + }, + "subject": { + "reference": "Patient/3e990510-1d51-4a25-abd4-3885cf9e8be9", + "type": "Patient", + "display": "Musamia Musamia Musamia (OpenMRS ID: MK3JYU)" + }, + "encounter": { + "reference": "Encounter/b690a37c-bef9-49b9-99ad-a533f0775309", + "type": "Encounter" + }, + "effectiveDateTime": "2023-05-31T08:13:37+03:00", + "issued": "2023-05-31T08:37:59.000+03:00", + "valueDateTime": "2023-06-28T00:00:00+03:00" + }, + "request": { + "method": "POST", + "url": "Observation" + } + } ] +} \ No newline at end of file diff --git a/input/tests/KenyaEMRStratifiers/445beebb-e886-11ea-87c2-00155d017200/KenyaEMR_fhir_bundle_enrolment_only.json b/input/tests/KenyaEMRStratifiers/445beebb-e886-11ea-87c2-00155d017200/KenyaEMR_fhir_bundle_enrolment_only.json new file mode 100644 index 000000000..56948db7f --- /dev/null +++ b/input/tests/KenyaEMRStratifiers/445beebb-e886-11ea-87c2-00155d017200/KenyaEMR_fhir_bundle_enrolment_only.json @@ -0,0 +1,155 @@ +{ + "resourceType": "Bundle", + "entry": [ + { + "resource": { + "resourceType": "Patient", + "id": "445beebb-e886-11ea-87c2-00155d017200", + "meta": { + "lastUpdated": "2020-08-27T19:56:35.000+03:00" + }, + "identifier": [ + { + "id": "4462a315-e886-11ea-87c2-00155d017200", + "extension": [ + { + "url": "http://fhir.openmrs.org/ext/patient/identifier#location", + "valueReference": { + "reference": "Location/f4934663-bf3a-4778-81b8-4c1e79398069", + "type": "Location", + "display": "Machakos Level 5 Hospital" + } + } + ], + "use": "official", + "type": { + "coding": [ + { + "code": "dfacd928-0370-4315-99d7-6ec1c9f7ae76" + } + ], + "text": "OpenMRS ID" + }, + "value": "MHECKF" + }, + { + "id": "c4c3233b-7dad-440f-8bab-a473d4abfb1a", + "use": "usual", + "type": { + "coding": [ + { + "code": "05ee9cf4-7242-4a17-b4d4-00f707265c8a" + } + ], + "text": "Unique Patient Number" + }, + "value": "1243898765" + } + ], + "active": true, + "name": [ + { + "id": "445bfd9c-e886-11ea-87c2-00155d017200", + "family": "MUNINI NJOROGE", + "given": [ + "MUNINI NJOROGE", + "MUNINI NJOROGE" + ] + } + ], + "gender": "female", + "birthDate": "2001-11-30", + "deceasedBoolean": false, + "address": [ + { + "id": "445c0ea0-e886-11ea-87c2-00155d017200", + "extension": [ + { + "url": "http://fhir.openmrs.org/ext/address", + "extension": [ + { + "url": "http://fhir.openmrs.org/ext/address#address1", + "valueString": "15034 address1" + }, + { + "url": "http://fhir.openmrs.org/ext/address#address2", + "valueString": "15034 address2" + }, + { + "url": "http://fhir.openmrs.org/ext/address#address4", + "valueString": "KITHIMANI" + } + ] + } + ], + "use": "home", + "district": "MACHAKOS", + "state": "YATTA" + } + ] + }, + "request": { + "method": "PUT", + "url": "Patient" + } + }, + { + "resource": { + "resourceType": "Observation", + "id": "fa1ea8e7-7d90-4a5b-a320-9ee61f7a6ad5", + "meta": { + "lastUpdated": "2023-08-01T12:04:19.000+03:00" + }, + "status": "final", + "code": { + "coding": [ + { + "code": "160540AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", + "display": "Method of enrollment" + }, + { + "system": 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"https://openconceptlab.org/orgs/CIEL/sources/CIEL", + "code": "160034", + "display": "Died" + }, + { + "system": "http://snomed.info/sct", + "code": "397709008", + "display": "Died" + } + ], + "text": "Died" + } + }, + "request": { + "method": "POST", + "url": "Observation" + } + } + ] +} \ No newline at end of file diff --git a/input/tests/KenyaEMRStratifiers/DeceasedBoolean/Bundle-ExampleDeceasedBoolean.json b/input/tests/KenyaEMRStratifiers/DeceasedBoolean/Bundle-ExampleDeceasedBoolean.json deleted file mode 100644 index 48bdb6a81..000000000 --- a/input/tests/KenyaEMRStratifiers/DeceasedBoolean/Bundle-ExampleDeceasedBoolean.json +++ /dev/null @@ -1,29 +0,0 @@ -{ - "resourceType" : "Bundle", - "id" : "ExampleDeceasedBoolean", - "type" : "transaction", - "entry" : [{ - "fullUrl" : "https://path-global-health.github.io/MERindicators/Patient/DeceasedBoolean", - "resource" : { - "resourceType" : "Patient", - "id" : "DeceasedBoolean", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Patient

Resource Patient "DeceasedBoolean"

active: true

name: Sandy Notsowell (OFFICIAL)

gender: female

birthDate: 1982-08-02

deceased: true

" - }, - "active" : true, - "name" : [{ - "use" : "official", - "family" : "Notsowell", - "given" : ["Sandy"] - }], - "gender" : "female", - "birthDate" : "1982-08-02", - "deceasedBoolean" : true - }, - "request" : { - "method" : "PUT", - "url" : "Patient/DeceasedBoolean" - } - }] -} \ No newline at end of file diff --git a/input/tests/KenyaEMRStratifiers/DeceasedDateTime/Bundle-ExampleDeceasedDateTime.json b/input/tests/KenyaEMRStratifiers/DeceasedDateTime/Bundle-ExampleDeceasedDateTime.json deleted file mode 100644 index 2727f7961..000000000 --- a/input/tests/KenyaEMRStratifiers/DeceasedDateTime/Bundle-ExampleDeceasedDateTime.json +++ /dev/null @@ -1,29 +0,0 @@ -{ - "resourceType" : "Bundle", - "id" : "ExampleDeceasedDateTime", - "type" : "transaction", - "entry" : [{ - "fullUrl" : "https://path-global-health.github.io/MERindicators/Patient/DeceasedDateTime", - "resource" : { - "resourceType" : "Patient", - "id" : "DeceasedDateTime", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Patient

Resource Patient "DeceasedDateTime"

active: true

name: Simon Notsowell (OFFICIAL)

gender: male

birthDate: 1982-01-23

deceased: 2015-02-14 13:42:00+1000

" - }, - "active" : true, - "name" : [{ - "use" : "official", - "family" : "Notsowell", - "given" : ["Simon"] - }], - "gender" : "male", - "birthDate" : "1982-01-23", - "deceasedDateTime" : "2015-02-14T13:42:00+10:00" - }, - "request" : { - "method" : "PUT", - "url" : "Patient/DeceasedDateTime" - } - }] -} \ No newline at end of file diff --git a/input/tests/KenyaEMRStratifiers/Patient-HIVSimple/Bundle-Example-HIVSimple.json b/input/tests/KenyaEMRStratifiers/Patient-HIVSimple/Bundle-Example-HIVSimple.json deleted file mode 100644 index 106201762..000000000 --- a/input/tests/KenyaEMRStratifiers/Patient-HIVSimple/Bundle-Example-HIVSimple.json +++ /dev/null @@ -1,467 +0,0 @@ -{ - "resourceType" : "Bundle", - "id" : "Example-HIVSimple", - "type" : "transaction", - "entry" : [{ - "fullUrl" : "https://path-global-health.github.io/MERindicators/Patient/Patient-HIVSimple", - "resource" : { - "resourceType" : "Patient", - "id" : "Patient-HIVSimple", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Patient

Resource Patient "Patient-HIVSimple"

name: Mittens Cat

gender: female

birthDate: 1985-01-01

" - }, - "name" : [{ - "text" : "Mittens Cat", - "family" : "Cat", - "given" : ["Mittens"] - }], - "gender" : "female", - "birthDate" : "1985-01-01" - }, - "request" : { - "method" : "PUT", - "url" : "Patient/Patient-HIVSimple" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Organization/Organization-HIVSimple1", - "resource" : { - "resourceType" : "Organization", - "id" : "Organization-HIVSimple1", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Organization

Resource Organization "Organization-HIVSimple1"

identifier: id:\u00a0Organization-HIVSimple1

name: Organization-HIVSimple Government Hospital

" - }, - "identifier" : [{ - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple1" - }], - "name" : "Organization-HIVSimple Government Hospital" - }, - "request" : { - "method" : "PUT", - "url" : "Organization/Organization-HIVSimple1" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Location/Location-HIVSimple1", - "resource" : { - "resourceType" : "Location", - "id" : "Location-HIVSimple1", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Location

Resource Location "Location-HIVSimple1"

identifier: id:\u00a0Location-HIVSimple1

managingOrganization: id:\u00a0Organization-HIVSimple1

" - }, - "identifier" : [{ - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Location-HIVSimple1" - }], - "managingOrganization" : { - "identifier" : { - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple1" - } - } - }, - "request" : { - "method" : "PUT", - "url" : "Location/Location-HIVSimple1" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Condition/Condition-HIVSimple", - "resource" : { - "resourceType" : "Condition", - "id" : "Condition-HIVSimple", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Condition

Resource Condition "Condition-HIVSimple"

clinicalStatus: Active (Condition Clinical Status Codes#active)

verificationStatus: Confirmed (ConditionVerificationStatus#confirmed)

code: HIV - Human immunodeficiency virus infection (SNOMED CT#86406008)

subject: See above (Patient/Patient-HIVSimple)

onset: 2010-01-01

" - }, - "clinicalStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical", - "code" : "active" - }] - }, - "verificationStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-ver-status", - "code" : "confirmed" - }] - }, - "code" : { - "coding" : [{ - "system" : "http://snomed.info/sct", - "code" : "86406008", - "display" : "HIV - Human immunodeficiency virus infection" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "onsetDateTime" : "2010-01-01" - }, - "request" : { - "method" : "PUT", - "url" : "Condition/Condition-HIVSimple" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Condition/Condition-Pregnancy", - "resource" : { - "resourceType" : "Condition", - "id" : "Condition-Pregnancy", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Condition

Resource Condition "Condition-Pregnancy"

clinicalStatus: Inactive (Condition Clinical Status Codes#inactive)

verificationStatus: Confirmed (ConditionVerificationStatus#confirmed)

code: Pregnancy (finding) (SNOMED CT#77386006)

subject: See above (Patient/Patient-HIVSimple)

onset: 2020-01-01

abatement: 2020-09-30

" - }, - "clinicalStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical", - "code" : "inactive" - }] - }, - "verificationStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-ver-status", - "code" : "confirmed" - }] - }, - "code" : { - "coding" : [{ - "system" : "http://snomed.info/sct", - "code" : "77386006", - "display" : "Pregnancy (finding)" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "onsetDateTime" : "2020-01-01", - "abatementDateTime" : "2020-09-30" - }, - "request" : { - "method" : "PUT", - "url" : "Condition/Condition-Pregnancy" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Encounter/Encounter-HIVSimple", - "resource" : { - "resourceType" : "Encounter", - "id" : "Encounter-HIVSimple", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Encounter

Resource Encounter "Encounter-HIVSimple"

status: finished

class: inpatient acute (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code ACUTE = 'inpatient acute', stated as 'null')

subject: See above (Patient/Patient-HIVSimple)

period: 2011-01-01 --> 2011-01-01

Locations

-Location
*See above (Location/Location-HIVSimple1)

serviceProvider: id:\u00a0Organization-HIVSimple1

" - }, - "status" : "finished", - "class" : { - "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", - "code" : "ACUTE" - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "period" : { - "start" : "2011-01-01", - "end" : "2011-01-01" - }, - "location" : [{ - "location" : { - "reference" : "Location/Location-HIVSimple1" - } - }], - "serviceProvider" : { - "identifier" : { - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple1" - } - } - }, - "request" : { - "method" : "PUT", - "url" : "Encounter/Encounter-HIVSimple" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/DiagnosticReport/DiagnosticReport-HIVSimple", - "resource" : { - "resourceType" : "DiagnosticReport", - "id" : "DiagnosticReport-HIVSimple", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: DiagnosticReport

Resource DiagnosticReport "DiagnosticReport-HIVSimple"

status: final

code: HIV 1 and 2 tests - Meaningful Use set (LOINC#75622-1)

subject: See above (Patient/Patient-HIVSimple)

encounter: See above (Encounter/Encounter-HIVSimple)

result: See above (Observation/Observation-HIVSimple)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "75622-1", - "display" : "HIV 1 and 2 tests - Meaningful Use set" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "encounter" : { - "reference" : "Encounter/Encounter-HIVSimple" - }, - "result" : [{ - "reference" : "Observation/Observation-HIVSimple" - }] - }, - "request" : { - "method" : "PUT", - "url" : "DiagnosticReport/DiagnosticReport-HIVSimple" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Observation/Observation-HIVSimple", - "resource" : { - "resourceType" : "Observation", - "id" : "Observation-HIVSimple", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Observation

Resource Observation "Observation-HIVSimple"

status: final

code: HIV 1 and 2 tests - Meaningful Use set (LOINC#75622-1)

subject: See above (Patient/Patient-HIVSimple)

encounter: See above (Encounter/Encounter-HIVSimple)

value: HIV Positive (SNOMED CT#165816005)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "75622-1", - "display" : "HIV 1 and 2 tests - Meaningful Use set" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "encounter" : { - "reference" : "Encounter/Encounter-HIVSimple" - }, - "valueCodeableConcept" : { - "coding" : [{ - "system" : "http://snomed.info/sct", - "code" : "165816005", - "display" : "HIV Positive" - }] - } - }, - "request" : { - "method" : "PUT", - "url" : "Observation/Observation-HIVSimple" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Encounter/Encounter-ViralLoad", - "resource" : { - "resourceType" : "Encounter", - "id" : "Encounter-ViralLoad", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Encounter

Resource Encounter "Encounter-ViralLoad"

status: finished

class: inpatient acute (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code ACUTE = 'inpatient acute', stated as 'null')

subject: See above (Patient/Patient-HIVSimple)

period: 2020-06-01 --> 2020-06-01

Locations

-Location
*See above (Location/Location-HIVSimple1)

serviceProvider: id:\u00a0Organization-HIVSimple1

" - }, - "status" : "finished", - "class" : { - "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", - "code" : "ACUTE" - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "period" : { - "start" : "2020-06-01", - "end" : "2020-06-01" - }, - "location" : [{ - "location" : { - "reference" : "Location/Location-HIVSimple1" - } - }], - "serviceProvider" : { - "identifier" : { - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple1" - } - } - }, - "request" : { - "method" : "PUT", - "url" : "Encounter/Encounter-ViralLoad" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/DiagnosticReport/DiagnosticReport-ViralLoad", - "resource" : { - "resourceType" : "DiagnosticReport", - "id" : "DiagnosticReport-ViralLoad", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: DiagnosticReport

Resource DiagnosticReport "DiagnosticReport-ViralLoad"

status: final

code: HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection (LOINC#25836-8)

subject: See above (Patient/Patient-HIVSimple)

encounter: See above (Encounter/Encounter-ViralLoad)

result: See above (Observation/Observation-ViralLoad)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "25836-8", - "display" : "HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "encounter" : { - "reference" : "Encounter/Encounter-ViralLoad" - }, - "result" : [{ - "reference" : "Observation/Observation-ViralLoad" - }] - }, - "request" : { - "method" : "PUT", - "url" : "DiagnosticReport/DiagnosticReport-ViralLoad" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Observation/Observation-ViralLoad", - "resource" : { - "resourceType" : "Observation", - "id" : "Observation-ViralLoad", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Observation

Resource Observation "Observation-ViralLoad"

status: final

code: HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection (LOINC#25836-8)

subject: See above (Patient/Patient-HIVSimple)

encounter: See above (Encounter/Encounter-ViralLoad)

issued: Jun 1, 2020, 7:28:17\u202fAM

value: 741660 copies/mL (Details: UCUM code {copies}/mL = '{copies}/mL')

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "25836-8", - "display" : "HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "encounter" : { - "reference" : "Encounter/Encounter-ViralLoad" - }, - "issued" : "2020-06-01T13:28:17.239+02:00", - "valueQuantity" : { - "value" : 741660, - "unit" : "copies/mL", - "system" : "http://unitsofmeasure.org", - "code" : "{copies}/mL" - } - }, - "request" : { - "method" : "PUT", - "url" : "Observation/Observation-ViralLoad" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Encounter/Encounter2-ViralLoad", - "resource" : { - "resourceType" : "Encounter", - "id" : "Encounter2-ViralLoad", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Encounter

Resource Encounter "Encounter2-ViralLoad"

status: finished

class: inpatient acute (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code ACUTE = 'inpatient acute', stated as 'null')

subject: See above (Patient/Patient-HIVSimple)

period: 2020-06-01 --> 2020-06-01

Locations

-Location
*See above (Location/Location-HIVSimple1)

serviceProvider: id:\u00a0Organization-HIVSimple1

" - }, - "status" : "finished", - "class" : { - "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", - "code" : "ACUTE" - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "period" : { - "start" : "2020-06-01", - "end" : "2020-06-01" - }, - "location" : [{ - "location" : { - "reference" : "Location/Location-HIVSimple1" - } - }], - "serviceProvider" : { - "identifier" : { - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple1" - } - } - }, - "request" : { - "method" : "PUT", - "url" : "Encounter/Encounter2-ViralLoad" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/DiagnosticReport/DiagnosticReport2-ViralLoad", - "resource" : { - "resourceType" : "DiagnosticReport", - "id" : "DiagnosticReport2-ViralLoad", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: DiagnosticReport

Resource DiagnosticReport "DiagnosticReport2-ViralLoad"

status: final

code: HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection (LOINC#25836-8)

subject: See above (Patient/Patient-HIVSimple)

encounter: See above (Encounter/Encounter2-ViralLoad)

result: See above (Observation/Observation2-ViralLoad)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "25836-8", - "display" : "HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "encounter" : { - "reference" : "Encounter/Encounter2-ViralLoad" - }, - "result" : [{ - "reference" : "Observation/Observation2-ViralLoad" - }] - }, - "request" : { - "method" : "PUT", - "url" : "DiagnosticReport/DiagnosticReport2-ViralLoad" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Observation/Observation2-ViralLoad", - "resource" : { - "resourceType" : "Observation", - "id" : "Observation2-ViralLoad", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Observation

Resource Observation "Observation2-ViralLoad"

status: final

code: HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection (LOINC#25836-8)

subject: See above (Patient/Patient-HIVSimple)

encounter: See above (Encounter/Encounter2-ViralLoad)

issued: Sep 1, 2020, 7:28:17\u202fAM

value: 800 copies/mL (Details: UCUM code {copies}/mL = '{copies}/mL')

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "25836-8", - "display" : "HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple" - }, - "encounter" : { - "reference" : "Encounter/Encounter2-ViralLoad" - }, - "issued" : "2020-09-01T13:28:17.239+02:00", - "valueQuantity" : { - "value" : 800, - "unit" : "copies/mL", - "system" : "http://unitsofmeasure.org", - "code" : "{copies}/mL" - } - }, - "request" : { - "method" : "PUT", - "url" : "Observation/Observation2-ViralLoad" - } - }] -} \ No newline at end of file diff --git a/input/tests/KenyaEMRStratifiers/Patient-HIVSimple2/Bundle-Example-HIVSimple2.json b/input/tests/KenyaEMRStratifiers/Patient-HIVSimple2/Bundle-Example-HIVSimple2.json deleted file mode 100644 index 7d28cb1d3..000000000 --- a/input/tests/KenyaEMRStratifiers/Patient-HIVSimple2/Bundle-Example-HIVSimple2.json +++ /dev/null @@ -1,360 +0,0 @@ -{ - "resourceType" : "Bundle", - "id" : "Example-HIVSimple2", - "type" : "transaction", - "entry" : [{ - "fullUrl" : "https://path-global-health.github.io/MERindicators/Patient/Patient-HIVSimple2", - "resource" : { - "resourceType" : "Patient", - "id" : "Patient-HIVSimple2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Patient

Resource Patient "Patient-HIVSimple2"

name: Mittens Cat

gender: female

birthDate: 1985-01-01

" - }, - "name" : [{ - "text" : "Mittens Cat", - "family" : "Cat", - "given" : ["Mittens"] - }], - "gender" : "female", - "birthDate" : "1985-01-01" - }, - "request" : { - "method" : "PUT", - "url" : "Patient/Patient-HIVSimple2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Organization/Organization-HIVSimple2", - "resource" : { - "resourceType" : "Organization", - "id" : "Organization-HIVSimple2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Organization

Resource Organization "Organization-HIVSimple2"

identifier: id:\u00a0Organization-HIVSimple2

name: Organization-HIVSimple2 Government Hospital

" - }, - "identifier" : [{ - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple2" - }], - "name" : "Organization-HIVSimple2 Government Hospital" - }, - "request" : { - "method" : "PUT", - "url" : "Organization/Organization-HIVSimple2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Location/Location-HIVSimple2", - "resource" : { - "resourceType" : "Location", - "id" : "Location-HIVSimple2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Location

Resource Location "Location-HIVSimple2"

identifier: id:\u00a0Location-HIVSimple2

managingOrganization: id:\u00a0Organization-HIVSimple2

" - }, - "identifier" : [{ - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Location-HIVSimple2" - }], - "managingOrganization" : { - "identifier" : { - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple2" - } - } - }, - "request" : { - "method" : "PUT", - "url" : "Location/Location-HIVSimple2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Condition/Condition-HIVSimple2", - "resource" : { - "resourceType" : "Condition", - "id" : "Condition-HIVSimple2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Condition

Resource Condition "Condition-HIVSimple2"

clinicalStatus: Active (Condition Clinical Status Codes#active)

verificationStatus: Confirmed (ConditionVerificationStatus#confirmed)

code: HIV - Human immunodeficiency virus infection (SNOMED CT#86406008)

subject: See above (Patient/Patient-HIVSimple2)

onset: 2010-01-01

" - }, - "clinicalStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical", - "code" : "active" - }] - }, - "verificationStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-ver-status", - "code" : "confirmed" - }] - }, - "code" : { - "coding" : [{ - "system" : "http://snomed.info/sct", - "code" : "86406008", - "display" : "HIV - Human immunodeficiency virus infection" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple2" - }, - "onsetDateTime" : "2010-01-01" - }, - "request" : { - "method" : "PUT", - "url" : "Condition/Condition-HIVSimple2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Condition/Condition-Pregnancy2", - "resource" : { - "resourceType" : "Condition", - "id" : "Condition-Pregnancy2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Condition

Resource Condition "Condition-Pregnancy2"

clinicalStatus: Inactive (Condition Clinical Status Codes#inactive)

verificationStatus: Confirmed (ConditionVerificationStatus#confirmed)

code: Pregnancy (finding) (SNOMED CT#77386006)

subject: See above (Patient/Patient-HIVSimple2)

onset: 2020-01-01

abatement: 2020-09-30

" - }, - "clinicalStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical", - "code" : "inactive" - }] - }, - "verificationStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-ver-status", - "code" : "confirmed" - }] - }, - "code" : { - "coding" : [{ - "system" : "http://snomed.info/sct", - "code" : "77386006", - "display" : "Pregnancy (finding)" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple2" - }, - "onsetDateTime" : "2020-01-01", - "abatementDateTime" : "2020-09-30" - }, - "request" : { - "method" : "PUT", - "url" : "Condition/Condition-Pregnancy2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Encounter/Encounter-HIVSimple2", - "resource" : { - "resourceType" : "Encounter", - "id" : "Encounter-HIVSimple2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Encounter

Resource Encounter "Encounter-HIVSimple2"

status: finished

class: inpatient acute (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code ACUTE = 'inpatient acute', stated as 'null')

subject: See above (Patient/Patient-HIVSimple2)

period: 2011-01-01 --> 2011-01-01

Locations

-Location
*See above (Location/Location-HIVSimple2)

serviceProvider: id:\u00a0Organization-HIVSimple2

" - }, - "status" : "finished", - "class" : { - "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", - "code" : "ACUTE" - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple2" - }, - "period" : { - "start" : "2011-01-01", - "end" : "2011-01-01" - }, - "location" : [{ - "location" : { - "reference" : "Location/Location-HIVSimple2" - } - }], - "serviceProvider" : { - "identifier" : { - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple2" - } - } - }, - "request" : { - "method" : "PUT", - "url" : "Encounter/Encounter-HIVSimple2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/DiagnosticReport/DiagnosticReport-HIVSimple2", - "resource" : { - "resourceType" : "DiagnosticReport", - "id" : "DiagnosticReport-HIVSimple2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: DiagnosticReport

Resource DiagnosticReport "DiagnosticReport-HIVSimple2"

status: final

code: HIV 1 and 2 tests - Meaningful Use set (LOINC#75622-1)

subject: See above (Patient/Patient-HIVSimple2)

encounter: See above (Encounter/Encounter-HIVSimple2)

result: See above (Observation/Observation-HIVSimple2)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "75622-1", - "display" : "HIV 1 and 2 tests - Meaningful Use set" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple2" - }, - "encounter" : { - "reference" : "Encounter/Encounter-HIVSimple2" - }, - "result" : [{ - "reference" : "Observation/Observation-HIVSimple2" - }] - }, - "request" : { - "method" : "PUT", - "url" : "DiagnosticReport/DiagnosticReport-HIVSimple2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Observation/Observation-HIVSimple2", - "resource" : { - "resourceType" : "Observation", - "id" : "Observation-HIVSimple2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Observation

Resource Observation "Observation-HIVSimple2"

status: final

code: HIV 1 and 2 tests - Meaningful Use set (LOINC#75622-1)

subject: See above (Patient/Patient-HIVSimple2)

encounter: See above (Encounter/Encounter-HIVSimple2)

value: HIV Positive (SNOMED CT#165816005)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "75622-1", - "display" : "HIV 1 and 2 tests - Meaningful Use set" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple2" - }, - "encounter" : { - "reference" : "Encounter/Encounter-HIVSimple2" - }, - "valueCodeableConcept" : { - "coding" : [{ - "system" : "http://snomed.info/sct", - "code" : "165816005", - "display" : "HIV Positive" - }] - } - }, - "request" : { - "method" : "PUT", - "url" : "Observation/Observation-HIVSimple2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Encounter/Encounter-ViralLoad2", - "resource" : { - "resourceType" : "Encounter", - "id" : "Encounter-ViralLoad2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Encounter

Resource Encounter "Encounter-ViralLoad2"

status: finished

class: inpatient acute (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code ACUTE = 'inpatient acute', stated as 'null')

subject: See above (Patient/Patient-HIVSimple2)

period: 2020-06-01 --> 2020-06-01

Locations

-Location
*See above (Location/Location-HIVSimple2)

serviceProvider: id:\u00a0Organization-HIVSimple2

" - }, - "status" : "finished", - "class" : { - "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", - "code" : "ACUTE" - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple2" - }, - "period" : { - "start" : "2020-06-01", - "end" : "2020-06-01" - }, - "location" : [{ - "location" : { - "reference" : "Location/Location-HIVSimple2" - } - }], - "serviceProvider" : { - "identifier" : { - "system" : "https://github.com/synthetichealth/synthea", - "value" : "Organization-HIVSimple2" - } - } - }, - "request" : { - "method" : "PUT", - "url" : "Encounter/Encounter-ViralLoad2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/DiagnosticReport/DiagnosticReport-ViralLoad2", - "resource" : { - "resourceType" : "DiagnosticReport", - "id" : "DiagnosticReport-ViralLoad2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: DiagnosticReport

Resource DiagnosticReport "DiagnosticReport-ViralLoad2"

status: final

code: HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection (LOINC#25836-8)

subject: See above (Patient/Patient-HIVSimple2)

encounter: See above (Encounter/Encounter-ViralLoad2)

result: See above (Observation/Observation-ViralLoad2)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "25836-8", - "display" : "HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple2" - }, - "encounter" : { - "reference" : "Encounter/Encounter-ViralLoad2" - }, - "result" : [{ - "reference" : "Observation/Observation-ViralLoad2" - }] - }, - "request" : { - "method" : "PUT", - "url" : "DiagnosticReport/DiagnosticReport-ViralLoad2" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Observation/Observation-ViralLoad2", - "resource" : { - "resourceType" : "Observation", - "id" : "Observation-ViralLoad2", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Observation

Resource Observation "Observation-ViralLoad2"

status: final

code: HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection (LOINC#25836-8)

subject: See above (Patient/Patient-HIVSimple2)

encounter: See above (Encounter/Encounter-ViralLoad2)

value: 741660 copies/mL (Details: UCUM code {copies}/mL = '{copies}/mL')

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "25836-8", - "display" : "HIV 1 RNA [#/volume] (viral load) in Specimen by NAA with probe detection" - }] - }, - "subject" : { - "reference" : "Patient/Patient-HIVSimple2" - }, - "encounter" : { - "reference" : "Encounter/Encounter-ViralLoad2" - }, - "valueQuantity" : { - "value" : 741660, - "unit" : "copies/mL", - "system" : "http://unitsofmeasure.org", - "code" : "{copies}/mL" - } - }, - "request" : { - "method" : "PUT", - "url" : "Observation/Observation-ViralLoad2" - } - }] -} \ No newline at end of file diff --git a/input/tests/KenyaEMRStratifiers/PatientCIEL/Bundle-ExampleCIEL.json b/input/tests/KenyaEMRStratifiers/PatientCIEL/Bundle-ExampleCIEL.json deleted file mode 100644 index dedf52101..000000000 --- a/input/tests/KenyaEMRStratifiers/PatientCIEL/Bundle-ExampleCIEL.json +++ /dev/null @@ -1,181 +0,0 @@ -{ - "resourceType" : "Bundle", - "id" : "ExampleCIEL", - "type" : "transaction", - "entry" : [{ - "fullUrl" : "https://path-global-health.github.io/MERindicators/Patient/PatientCIEL", - "resource" : { - "resourceType" : "Patient", - "id" : "PatientCIEL", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Patient

Resource Patient "PatientCIEL"

identifier: OpenMRS ID:\u00a01234567\u00a0(use:\u00a0OFFICIAL)

name: Mittens Cat

gender: female

birthDate: 1985-01-01

" - }, - "identifier" : [{ - "extension" : [{ - "url" : "http://fhir.openmrs.org/ext/patient/identifier#location", - "valueReference" : { - "reference" : "Location/LocationCIEL", - "type" : "Location", - "display" : "Inpatient Ward" - } - }], - "use" : "official", - "type" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/v2-0203", - "code" : "MR" - }], - "text" : "OpenMRS ID" - }, - "value" : "1234567" - }], - "name" : [{ - "text" : "Mittens Cat", - "family" : "Cat", - "given" : ["Mittens"] - }], - "gender" : "female", - "birthDate" : "1985-01-01" - }, - "request" : { - "method" : "PUT", - "url" : "Patient/PatientCIEL" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Organization/OrganizationCIEL", - "resource" : { - "resourceType" : "Organization", - "id" : "OrganizationCIEL", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Organization

Resource Organization "OrganizationCIEL"

name: OrganizationCIEL Government Hospital

" - }, - "name" : "OrganizationCIEL Government Hospital" - }, - "request" : { - "method" : "PUT", - "url" : "Organization/OrganizationCIEL" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Location/LocationCIEL", - "resource" : { - "resourceType" : "Location", - "id" : "LocationCIEL", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Location

Resource Location "LocationCIEL"

" - } - }, - "request" : { - "method" : "PUT", - "url" : "Location/LocationCIEL" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Condition/Condition-PregnancyCIEL", - "resource" : { - "resourceType" : "Condition", - "id" : "Condition-PregnancyCIEL", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Condition

Resource Condition "Condition-PregnancyCIEL"

clinicalStatus: Inactive (Condition Clinical Status Codes#inactive)

verificationStatus: Confirmed (ConditionVerificationStatus#confirmed)

code: Pregnancy (finding) (SNOMED CT#77386006)

subject: See above (Patient/PatientCIEL)

onset: 2020-01-01

abatement: 2020-09-30

" - }, - "clinicalStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-clinical", - "code" : "inactive" - }] - }, - "verificationStatus" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/condition-ver-status", - "code" : "confirmed" - }] - }, - "code" : { - "coding" : [{ - "system" : "http://snomed.info/sct", - "code" : "77386006", - "display" : "Pregnancy (finding)" - }] - }, - "subject" : { - "reference" : "Patient/PatientCIEL" - }, - "onsetDateTime" : "2020-01-01", - "abatementDateTime" : "2020-09-30" - }, - "request" : { - "method" : "PUT", - "url" : "Condition/Condition-PregnancyCIEL" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Encounter/EncounterCIEL", - "resource" : { - "resourceType" : "Encounter", - "id" : "EncounterCIEL", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Encounter

Resource Encounter "EncounterCIEL"

status: finished

class: inpatient acute (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code ACUTE = 'inpatient acute', stated as 'null')

subject: See above (Patient/PatientCIEL)

period: 2011-01-01 --> 2011-01-01

Locations

-Location
*See above (Location/LocationCIEL)
" - }, - "status" : "finished", - "class" : { - "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", - "code" : "ACUTE" - }, - "subject" : { - "reference" : "Patient/PatientCIEL" - }, - "period" : { - "start" : "2011-01-01", - "end" : "2011-01-01" - }, - "location" : [{ - "location" : { - "reference" : "Location/LocationCIEL" - } - }] - }, - "request" : { - "method" : "PUT", - "url" : "Encounter/EncounterCIEL" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Observation/ObservationCIEL", - "resource" : { - "resourceType" : "Observation", - "id" : "ObservationCIEL", - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Observation

Resource Observation "ObservationCIEL"

status: final

code: CURRENTLY TAKING ARV (CIEL#160119)

subject: See above (Patient/PatientCIEL)

value: YES (CIEL#1065)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "https://openconceptlab.org/orgs/CIEL/sources/CIEL", - "code" : "160119", - "display" : "CURRENTLY TAKING ARV" - }] - }, - "subject" : { - "reference" : "Patient/PatientCIEL" - }, - "valueCodeableConcept" : { - "coding" : [{ - "system" : "https://openconceptlab.org/orgs/CIEL/sources/CIEL", - "code" : "1065", - "display" : "YES" - }] - } - }, - "request" : { - "method" : "PUT", - "url" : "Observation/ObservationCIEL" - } - }] -} \ No newline at end of file diff --git a/input/tests/KenyaEMRStratifiers/PatientOMRS0/Bundle-ExampleOMRS0.json b/input/tests/KenyaEMRStratifiers/PatientOMRS0/Bundle-ExampleOMRS0.json deleted file mode 100644 index 27ab2226b..000000000 --- a/input/tests/KenyaEMRStratifiers/PatientOMRS0/Bundle-ExampleOMRS0.json +++ /dev/null @@ -1,192 +0,0 @@ -{ - "resourceType" : "Bundle", - "id" : "ExampleOMRS0", - "type" : "transaction", - "entry" : [{ - "fullUrl" : "https://path-global-health.github.io/MERindicators/Patient/PatientOMRS0", - "resource" : { - "resourceType" : "Patient", - "id" : "PatientOMRS0", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/omrs-patient"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Patient

Resource Patient "PatientOMRS0"

Profile: OpenMRS Patient

identifier: OpenMRS ID:\u00a04343534\u00a0(use:\u00a0OFFICIAL)

active: true

name: Ricky Jeannette

gender: male

birthDate: 1996-12-12

deceased: false

" - }, - "identifier" : [{ - "extension" : [{ - "url" : "http://fhir.openmrs.org/core/StructureDefinition/omrs-patient-identifier-location", - "valueReference" : { - "reference" : "Location/a3b793f0-eb53-4cda-92ce-fe0a77106252", - "type" : "Location", - "display" : "Inpatient Ward" - } - }], - "use" : "official", - "type" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/v2-0203", - "code" : "MR" - }], - "text" : "OpenMRS ID" - }, - "value" : "4343534" - }], - "active" : true, - "name" : [{ - "family" : "Jeannette", - "given" : ["Ricky"] - }], - "gender" : "male", - "birthDate" : "1996-12-12", - "deceasedBoolean" : false - }, - "request" : { - "method" : "PUT", - "url" : "Patient/PatientOMRS0" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Location/LocationExample", - "resource" : { - "resourceType" : "Location", - "id" : "a3b793f0-eb53-4cda-92ce-fe0a77106252", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/omrs-location"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Location

Resource Location "a3b793f0-eb53-4cda-92ce-fe0a77106252"

Profile: OpenMRS Location

status: active

name: Outpatient Clinic

description: Outpatient Clinic

type: Sleep disorders unit (RoleCode#SLEEP)

telecom: ph: (+1) 734-677-7777, fax: (+1) 734-677-6622, hq@HL7.org

address: 3300 Washtenaw Avenue, Suite 227 Ann Arbor MI 48104 USA (HOME)

Positions

-LongitudeLatitude
*-83.6947142.2565
" - }, - "status" : "active", - "name" : "Outpatient Clinic", - "description" : "Outpatient Clinic", - "type" : [{ - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", - "code" : "SLEEP", - "display" : "Sleep disorders unit" - }] - }], - "telecom" : [{ - "system" : "phone", - "value" : "(+1) 734-677-7777" - }, - { - "system" : "fax", - "value" : "(+1) 734-677-6622" - }, - { - "system" : "email", - "value" : "hq@HL7.org" - }], - "address" : { - "use" : "home", - "line" : ["3300 Washtenaw Avenue, Suite 227"], - "city" : "Ann Arbor", - "district" : "Mukono", - "state" : "MI", - "postalCode" : "48104", - "country" : "USA" - }, - "position" : { - "longitude" : -83.69471, - "latitude" : 42.2565 - } - }, - "request" : { - "method" : "PUT", - "url" : "Location/LocationExample" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Encounter/EncounterOMRS0", - "resource" : { - "resourceType" : "Encounter", - "id" : "EncounterOMRS0", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/omrs-encounter"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Encounter

Resource Encounter "EncounterOMRS0"

Profile: Openmrs Encounter

status: unknown

class: ambulatory (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code AMB = 'ambulatory', stated as 'null')

type: Vitals (encounter-type#67a71486-1a54-468f-ac3e-7091a9a79584)

subject: See above (Patient/PatientOMRS0)

period: 2022-06-22 --> 2022-06-22

Locations

-Location
*See above (Location/a3b793f0-eb53-4cda-92ce-fe0a77106252)
" - }, - "status" : "unknown", - "class" : { - "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", - "code" : "AMB" - }, - "type" : [{ - "coding" : [{ - "system" : "http://fhir.openmrs.org/code-system/encounter-type", - "code" : "67a71486-1a54-468f-ac3e-7091a9a79584", - "display" : "Vitals" - }] - }], - "subject" : { - "reference" : "Patient/PatientOMRS0", - "type" : "Patient" - }, - "period" : { - "start" : "2022-06-22", - "end" : "2022-06-22" - }, - "location" : [{ - "location" : { - "reference" : "Location/a3b793f0-eb53-4cda-92ce-fe0a77106252" - } - }] - }, - "request" : { - "method" : "PUT", - "url" : "Encounter/EncounterOMRS0" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Observation/ObservationOMRS0", - "resource" : { - "resourceType" : "Observation", - "id" : "ObservationOMRS0", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/OpenMRS-observation"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Observation

Resource Observation "ObservationOMRS0"

Profile: OpenMRS Observation

status: final

category: Exam (Observation Category Codes#exam)

code: Currently taking ARV (CIEL#160119)

subject: See above (Patient/PatientOMRS0)

encounter: Encounter/5b829d01-34bb-47d1-b1bb-9303c3a9ebcb

value: Yes (CIEL#1065)

" - }, - "status" : "final", - "category" : [{ - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/observation-category", - "code" : "exam" - }] - }], - "code" : { - "coding" : [{ - "system" : "https://openconceptlab.org/orgs/CIEL/sources/CIEL", - "code" : "160119", - "display" : "Currently taking ARV" - }], - "text" : "Currently taking ARV" - }, - "subject" : { - "reference" : "Patient/PatientOMRS0" - }, - "encounter" : { - "reference" : "Encounter/5b829d01-34bb-47d1-b1bb-9303c3a9ebcb" - }, - "valueCodeableConcept" : { - "coding" : [{ - "system" : "https://openconceptlab.org/orgs/CIEL/sources/CIEL", - "code" : "1065", - "display" : "Yes" - }] - } - }, - "request" : { - "method" : "PUT", - "url" : "Observation/ObservationOMRS0" - } - }] -} \ No newline at end of file diff --git a/input/tests/KenyaEMRStratifiers/example-openmrs-Patient/Bundle-Example0.json b/input/tests/KenyaEMRStratifiers/example-openmrs-Patient/Bundle-Example0.json deleted file mode 100644 index ca12bacc2..000000000 --- a/input/tests/KenyaEMRStratifiers/example-openmrs-Patient/Bundle-Example0.json +++ /dev/null @@ -1,290 +0,0 @@ -{ - "resourceType" : "Bundle", - "id" : "Example0", - "type" : "transaction", - "entry" : [{ - "fullUrl" : "https://path-global-health.github.io/MERindicators/Patient/example-openmrs-Patient", - "resource" : { - "resourceType" : "Patient", - "id" : "example-openmrs-Patient", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/omrs-patient"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Patient

Resource Patient "example-openmrs-Patient"

Profile: OpenMRS Patient

identifier: OpenMRS ID:\u00a04343534\u00a0(use:\u00a0OFFICIAL)

active: true

name: Ricky Jeannette

telecom: +256788232241

gender: male

birthDate: 1996-12-12

deceased: false

address: Washington Washington (HOME)

" - }, - "identifier" : [{ - "extension" : [{ - "url" : "http://fhir.openmrs.org/core/StructureDefinition/omrs-patient-identifier-location", - "valueReference" : { - "reference" : "Location/a3b793f0-eb53-4cda-92ce-fe0a77106252", - "type" : "Location", - "display" : "Inpatient Ward" - } - }], - "use" : "official", - "type" : { - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/v2-0203", - "code" : "MR" - }], - "text" : "OpenMRS ID" - }, - "value" : "4343534" - }], - "active" : true, - "name" : [{ - "family" : "Jeannette", - "given" : ["Ricky"] - }], - "telecom" : [{ - "system" : "phone", - "value" : "+256788232241" - }], - "gender" : "male", - "birthDate" : "1996-12-12", - "deceasedBoolean" : false, - "address" : [{ - "use" : "home", - "city" : "Washington", - "district" : "Washington", - "country" : "Washington" - }] - }, - "request" : { - "method" : "PUT", - "url" : "Patient/example-openmrs-Patient" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Location/LocationExample", - "resource" : { - "resourceType" : "Location", - "id" : "a3b793f0-eb53-4cda-92ce-fe0a77106252", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/omrs-location"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Location

Resource Location "a3b793f0-eb53-4cda-92ce-fe0a77106252"

Profile: OpenMRS Location

status: active

name: Outpatient Clinic

description: Outpatient Clinic

type: Sleep disorders unit (RoleCode#SLEEP)

telecom: ph: (+1) 734-677-7777, fax: (+1) 734-677-6622, hq@HL7.org

address: 3300 Washtenaw Avenue, Suite 227 Ann Arbor MI 48104 USA (HOME)

Positions

-LongitudeLatitude
*-83.6947142.2565
" - }, - "status" : "active", - "name" : "Outpatient Clinic", - "description" : "Outpatient Clinic", - "type" : [{ - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode", - "code" : "SLEEP", - "display" : "Sleep disorders unit" - }] - }], - "telecom" : [{ - "system" : "phone", - "value" : "(+1) 734-677-7777" - }, - { - "system" : "fax", - "value" : "(+1) 734-677-6622" - }, - { - "system" : "email", - "value" : "hq@HL7.org" - }], - "address" : { - "use" : "home", - "line" : ["3300 Washtenaw Avenue, Suite 227"], - "city" : "Ann Arbor", - "district" : "Mukono", - "state" : "MI", - "postalCode" : "48104", - "country" : "USA" - }, - "position" : { - "longitude" : -83.69471, - "latitude" : 42.2565 - } - }, - "request" : { - "method" : "PUT", - "url" : "Location/LocationExample" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Condition/ConditionExample", - "resource" : { - "resourceType" : "Condition", - "id" : "a6867095-e2b1-4a68-9aaa-0d161a37ce9c", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/omrs-Condition"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Condition

Resource Condition "a6867095-e2b1-4a68-9aaa-0d161a37ce9c"

Profile: OpenMRS condition

code: Malaria (CIEL#116128)

subject: See above (Patient/example-openmrs-Patient: Horatio Hornblower (OpenMRS ID:101-6))

recordedDate: 2019-06-18 06:37:26+0300

" - }, - "code" : { - "coding" : [{ - "system" : "https://openconceptlab.org/orgs/CIEL/sources/CIEL", - "code" : "116128" - }] - }, - "subject" : { - "reference" : "Patient/example-openmrs-Patient", - "type" : "Patient", - "identifier" : { - "use" : "official", - "value" : "101-6" - }, - "display" : "Horatio Hornblower (OpenMRS ID:101-6)" - }, - "recordedDate" : "2019-06-18T06:37:26+03:00" - }, - "request" : { - "method" : "PUT", - "url" : "Condition/ConditionExample" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Encounter/EncounterExample", - "resource" : { - "resourceType" : "Encounter", - "id" : "5b829d01-34bb-47d1-b1bb-9303c3a9ebcb", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/omrs-encounter"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Encounter

Resource Encounter "5b829d01-34bb-47d1-b1bb-9303c3a9ebcb"

Profile: Openmrs Encounter

status: unknown

class: ambulatory (Details: http://terminology.hl7.org/CodeSystem/v3-ActCode code AMB = 'ambulatory', stated as 'null')

type: Vitals (encounter-type#67a71486-1a54-468f-ac3e-7091a9a79584)

subject: See above (Patient/example-openmrs-Patient)

period: 2022-06-22 --> 2022-06-22

Locations

-Location
*See above (Location/a3b793f0-eb53-4cda-92ce-fe0a77106252)
" - }, - "status" : "unknown", - "class" : { - "system" : "http://terminology.hl7.org/CodeSystem/v3-ActCode", - "code" : "AMB" - }, - "type" : [{ - "coding" : [{ - "system" : "http://fhir.openmrs.org/code-system/encounter-type", - "code" : "67a71486-1a54-468f-ac3e-7091a9a79584", - "display" : "Vitals" - }] - }], - "subject" : { - "reference" : "Patient/example-openmrs-Patient", - "type" : "Patient" - }, - "period" : { - "start" : "2022-06-22", - "end" : "2022-06-22" - }, - "location" : [{ - "location" : { - "reference" : "Location/a3b793f0-eb53-4cda-92ce-fe0a77106252" - } - }] - }, - "request" : { - "method" : "PUT", - "url" : "Encounter/EncounterExample" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/DiagnosticReport/example-Openmrs-DiagnosticReport", - "resource" : { - "resourceType" : "DiagnosticReport", - "id" : "8a849d5e-6011-4279-a124-40ada5a687de", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/OpenMRS-diagnostic-report"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: DiagnosticReport

Resource DiagnosticReport "8a849d5e-6011-4279-a124-40ada5a687de"

Profile: OpenMRS Diagnostic Report

status: final

code: Systolic blood pressure (LOINC#8480-6)

subject: See above (Patient/example-openmrs-Patient)

encounter: See above (Encounter/5b829d01-34bb-47d1-b1bb-9303c3a9ebcb)

issued: Mar 3, 2011, 7:45:33\u202fPM

result: See above (Observation/example-openmrs-Observation)

" - }, - "status" : "final", - "code" : { - "coding" : [{ - "system" : "http://loinc.org", - "code" : "8480-6", - "display" : "Systolic blood pressure" - }] - }, - "subject" : { - "reference" : "Patient/example-openmrs-Patient" - }, - "encounter" : { - "reference" : "Encounter/5b829d01-34bb-47d1-b1bb-9303c3a9ebcb" - }, - "issued" : "2011-03-04T11:45:33+11:00", - "result" : [{ - "reference" : "Observation/example-openmrs-Observation" - }] - }, - "request" : { - "method" : "PUT", - "url" : "DiagnosticReport/example-Openmrs-DiagnosticReport" - } - }, - { - "fullUrl" : "https://path-global-health.github.io/MERindicators/Observation/example-openmrs-Observation", - "resource" : { - "resourceType" : "Observation", - "id" : "example-openmrs-Observation", - "meta" : { - "profile" : ["http://fhir.openmrs.org/core/StructureDefinition/OpenMRS-observation"] - }, - "text" : { - "status" : "generated", - "div" : "

Generated Narrative: Observation

Resource Observation "example-openmrs-Observation"

Profile: OpenMRS Observation

status: final

category: Exam (Observation Category Codes#exam)

code: Arterial blood oxygen saturation (pulse oximeter) (SNOMED CT#431314004 "SpO2 - saturation of peripheral oxygen")

subject: See above (Patient/example-openmrs-Patient)

encounter: See above (Encounter/5b829d01-34bb-47d1-b1bb-9303c3a9ebcb)

value: 25 DEG C

interpretation: High (ObservationInterpretation#H)

ReferenceRanges

-LowHighType
*10272absolute (reference-range#absolute)
" - }, - "status" : "final", - "category" : [{ - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/observation-category", - "code" : "exam" - }] - }], - "code" : { - "coding" : [{ - "system" : "http://snomed.info/sct", - "code" : "431314004", - "display" : "SpO2 - saturation of peripheral oxygen" - }], - "text" : "Arterial blood oxygen saturation (pulse oximeter)" - }, - "subject" : { - "reference" : "Patient/example-openmrs-Patient" - }, - "encounter" : { - "reference" : "Encounter/5b829d01-34bb-47d1-b1bb-9303c3a9ebcb" - }, - "valueQuantity" : { - "value" : 25, - "unit" : "DEG C" - }, - "interpretation" : [{ - "coding" : [{ - "system" : "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation", - "code" : "H", - "display" : "High" - }] - }], - "referenceRange" : [{ - "low" : { - "value" : 10 - }, - "high" : { - "value" : 272 - }, - "type" : { - "coding" : [{ - "system" : "http://fhir.openmrs.org/ext/obs/reference-range", - "code" : "absolute" - }] - } - }] - 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