From 57ef772190c242db1901b116d1d99640f624c417 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Daniel=20Domingo-Fern=C3=A1ndez?= Date: Wed, 3 Oct 2018 11:28:37 +0200 Subject: [PATCH] Update README.rst --- README.rst | 35 ++++++++++++++++++++++++++++++----- 1 file changed, 30 insertions(+), 5 deletions(-) diff --git a/README.rst b/README.rst index 243ff19..3c93069 100644 --- a/README.rst +++ b/README.rst @@ -1,10 +1,10 @@ -PathMe |build| -============== +PathMe |build| |coverage| |docs| |zenodo| +========================================= The primary goal of this package is to convert KEGG, Reactome, and WikiPathways (see References below) to Biological Expression Language (BEL). PathMe is the continuation of the ComPath web application aimed at exploring, analyzing, and curating pathway knowledge in a more simplistic gene-centric view. This different approach involves converting all the pathways to BEL as a pivotal integration schema and evaluating consensus and gaps in pathway knowledge. Additionally, ComPath Reloaded is complemented with PathMe, a web application that enables the exploration of all the pathways from these resources using the mappings curated from ComPath. -Installation ------------- +Installation |pypi_version| |python_versions| |pypi_license| +------------------------------------------------------------ 1. ``pathme`` can be installed with the following commmands: .. code-block:: sh @@ -95,7 +95,32 @@ WikiPathways (2016) doi:10.1093/nar/gkv1024 - Kelder, T., et al. WikiPathways: building research communities on biological pathways. Nucleic Acids Res. 2012 Jan;40(Database issue):D1301-7 - + + .. |build| image:: https://travis-ci.org/ComPath/PathMe.svg?branch=master :target: https://travis-ci.org/ComPath/PathMe :alt: Build Status + +.. |coverage| image:: https://codecov.io/gh/ComPath/PathMe/coverage.svg?branch=master + :target: https://codecov.io/gh/ComPath/PathMe?branch=master + :alt: Coverage Status + +.. |docs| image:: http://readthedocs.org/projects/pathme/badge/?version=latest + :target: https://pathme.readthedocs.io/en/latest/ + :alt: Documentation Status + +.. |climate| image:: https://codeclimate.com/github/compath/pathme/badges/gpa.svg + :target: https://codeclimate.com/github/compath/pathme + :alt: Code Climate + +.. |python_versions| image:: https://img.shields.io/pypi/pyversions/pathme.svg + :alt: Stable Supported Python Versions + +.. |pypi_version| image:: https://img.shields.io/pypi/v/pathme.svg + :alt: Current version on PyPI + +.. |pypi_license| image:: https://img.shields.io/pypi/l/pathme.svg + :alt: Apache-2.0 + +.. |zenodo| image:: https://zenodo.org/badge/fixme.svg + :target: https://zenodo.org/badge/latestdoi/fixme