diff --git a/.circleci/config.yml b/.circleci/config.yml index bf445fd8d..7be8e3c48 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -4,7 +4,7 @@ orbs: .dockersetup: &dockersetup docker: - - image: pennlinc/aslprep_build:0.0.7 + - image: pennlinc/aslprep_build:0.0.11 working_directory: /src/aslprep runinstall: &runinstall diff --git a/Dockerfile b/Dockerfile index dadba746e..ba701f667 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM pennlinc/aslprep_build:0.0.7 +FROM pennlinc/aslprep_build:0.0.11 # Install aslprep COPY . /src/aslprep diff --git a/aslprep/cli/workflow.py b/aslprep/cli/workflow.py index ab39d8e51..873902782 100644 --- a/aslprep/cli/workflow.py +++ b/aslprep/cli/workflow.py @@ -158,8 +158,7 @@ def build_boilerplate(config_file, workflow): "-s", "--bibliography", str(load_data("boilerplate.bib")), - "--filter", - "pandoc-citeproc", + "--citeproc", "--metadata", 'pagetitle="ASLPrep citation boilerplate"', str(citation_files["md"]), diff --git a/pyproject.toml b/pyproject.toml index ae2bfc8b8..d5be1aa6a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -177,7 +177,7 @@ markers = [ ] [tool.coverage.run] -branch = true +branch = false omit = [ "*/tests/*", "*/__init__.py",