Dockerfile_3Tissue

FROM nvidia/cuda:11.1.1-devel-ubuntu18.04
ARG TAG_ANTS

RUN apt-get update && \
    apt-get install -y --no-install-recommends \
    curl git g++ python libeigen3-dev zlib1g-dev libqt5opengl5-dev libqt5svg5-dev libgl1-mesa-dev libfftw3-dev libtiff5-dev libpng-dev unzip

ARG MRTRIX_SHA=5f4c31bc93008520c61d59b94af0db3f17b4ab76
ENV PATH="/opt/mrtrix3-latest/bin:$PATH"
RUN cd /opt \
&& curl -sSLO https://github.com/PennLINC/MRtrix3Tissue/archive/${MRTRIX_SHA}.zip \
&& unzip ${MRTRIX_SHA}.zip \
    && mv MRtrix3Tissue-${MRTRIX_SHA} /opt/3Tissue \
    && rm ${MRTRIX_SHA}.zip \
    && cd /opt/3Tissue \
    && ./configure -nogui \
    && echo "Compiling MRtrix3-3Tissue ..." \
    && ./build