From 69f3fd7b4060b523fffef5e64cecf95a34bf23d7 Mon Sep 17 00:00:00 2001 From: Steven Meisler Date: Mon, 23 Sep 2024 10:00:12 -0400 Subject: [PATCH] Update parser.py --- qsirecon/cli/parser.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/qsirecon/cli/parser.py b/qsirecon/cli/parser.py index f575666..f0143ab 100644 --- a/qsirecon/cli/parser.py +++ b/qsirecon/cli/parser.py @@ -476,7 +476,6 @@ def parse_args(args=None, namespace=None): # Run ingression if necessary if config.workflow.input_type in ("hcpya", "ukb"): - import os.path as op import shutil from ingress2qsirecon.data import load_resource @@ -487,8 +486,8 @@ def parse_args(args=None, namespace=None): config.execution.bids_dir = work_dir / "bids" # Make fake BIDS files - bids_scaffold = str(load_resource("bids_scaffold")) - if not op.exists(op.join(config.execution.bids_dir, "dataset_description.json")): + bids_scaffold = load_resource("bids_scaffold") + if not (config.execution.bids_dir / "dataset_description.json").exists(): shutil.copytree( bids_scaffold, config.execution.bids_dir,