diff --git a/qsirecon/tests/data/amico_noddi_outputs.txt b/qsirecon/tests/data/amico_noddi_outputs.txt index 46628b9c..9032b10a 100644 --- a/qsirecon/tests/data/amico_noddi_outputs.txt +++ b/qsirecon/tests/data/amico_noddi_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -qsirecon/sub-PNC -qsirecon/sub-PNC.html +qsirecon qsirecon qsirecon-NODDI qsirecon-NODDI/sub-PNC @@ -18,4 +15,8 @@ qsirecon-NODDI/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_model-no qsirecon-NODDI/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_model-noddi_mdp-isovf_dwimap.nii.gz qsirecon-NODDI/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_model-noddi_mdp-od_dwimap.nii.gz qsirecon-NODDI/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_model-noddi_mfp-direction_dwimap.nii.gz +qsirecon/dwiqc.json qsirecon/sub-PNC +qsirecon/sub-PNC +qsirecon/sub-PNC.html +sub-PNC diff --git a/qsirecon/tests/data/autotrack_outputs.txt b/qsirecon/tests/data/autotrack_outputs.txt index 43e1f2dc..27283456 100644 --- a/qsirecon/tests/data/autotrack_outputs.txt +++ b/qsirecon/tests/data/autotrack_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -sub-ABCD -qsirecon/sub-ABCD.html +qsirecon qsirecon qsirecon-DSIStudio qsirecon-DSIStudio/sub-ABCD @@ -17,4 +14,7 @@ qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_bun qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_bundlestats.csv qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap.fib.gz qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_mapping.map.gz +qsirecon/dwiqc.json qsirecon/sub-ABCD +qsirecon/sub-ABCD.html +sub-ABCD diff --git a/qsirecon/tests/data/dipy_dki_outputs.txt b/qsirecon/tests/data/dipy_dki_outputs.txt index a5f1b6ba..fd7a1eb4 100644 --- a/qsirecon/tests/data/dipy_dki_outputs.txt +++ b/qsirecon/tests/data/dipy_dki_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -sub-ABCD -qsirecon/sub-ABCD.html +qsirecon qsirecon qsirecon-DKI qsirecon-DKI/sub-ABCD @@ -21,4 +18,7 @@ qsirecon-DKI/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-dki qsirecon-DKI/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-dki_mdp-RD_dwimap.nii.gz qsirecon-DKI/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-dki_mdp-RK_dwimap.nii.gz qsirecon-DKI/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mdp-FA_dwimap.nii.gz +qsirecon/dwiqc.json qsirecon/sub-ABCD +qsirecon/sub-ABCD.html +sub-ABCD diff --git a/qsirecon/tests/data/dipy_mapmri_outputs.txt b/qsirecon/tests/data/dipy_mapmri_outputs.txt index 191ac054..916b992a 100644 --- a/qsirecon/tests/data/dipy_mapmri_outputs.txt +++ b/qsirecon/tests/data/dipy_mapmri_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -sub-ABCD -qsirecon/sub-ABCD.html +qsirecon qsirecon qsirecon-DIPYMAPMRI qsirecon-DIPYMAPMRI/sub-ABCD @@ -23,4 +20,7 @@ qsirecon-mapmri_recon/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_ qsirecon-mapmri_recon/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-mapmri_mdp-RTOP_dwimap.nii.gz qsirecon-mapmri_recon/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-mapmri_mdp-RTPP_dwimap.nii.gz qsirecon-mapmri_recon/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-mapmri_mfp-lapnorm_dwimap.nii.gz +qsirecon/dwiqc.json qsirecon/sub-ABCD +qsirecon/sub-ABCD.html +sub-ABCD diff --git a/qsirecon/tests/data/mrtrix3_recon_outputs.txt b/qsirecon/tests/data/mrtrix3_recon_outputs.txt index a301bb7a..ab52c710 100644 --- a/qsirecon/tests/data/mrtrix3_recon_outputs.txt +++ b/qsirecon/tests/data/mrtrix3_recon_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -sub-ABCD -qsirecon/sub-ABCD.html +qsirecon qsirecon qsirecon-MRtrix3_act-FAST qsirecon-MRtrix3_act-FAST/sub-ABCD @@ -49,4 +46,7 @@ qsirecon-anat/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_atlas-sc qsirecon-anat/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_atlas-schaefer400_dseg.mif.gz qsirecon-anat/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_atlas-schaefer400_dseg.nii.gz qsirecon-anat/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_atlas-schaefer400_dseg.txt +qsirecon/dwiqc.json +qsirecon/sub-ABCD +qsirecon/sub-ABCD.html sub-ABCD diff --git a/qsirecon/tests/data/mrtrix_singleshell_ss3t_act_outputs.txt b/qsirecon/tests/data/mrtrix_singleshell_ss3t_act_outputs.txt index ce34034a..1cf9586d 100644 --- a/qsirecon/tests/data/mrtrix_singleshell_ss3t_act_outputs.txt +++ b/qsirecon/tests/data/mrtrix_singleshell_ss3t_act_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -qsirecon/sub-PNC -qsirecon/sub-PNC.html +qsirecon qsirecon qsirecon-MRtrix3_fork-SS3T_act-FAST qsirecon-MRtrix3_fork-SS3T_act-FAST/sub-PNC @@ -49,4 +46,8 @@ qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-sch qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.mif.gz qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.nii.gz qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.txt +qsirecon/dwiqc.json qsirecon/sub-PNC +qsirecon/sub-PNC +qsirecon/sub-PNC.html +sub-PNC diff --git a/qsirecon/tests/data/mrtrix_singleshell_ss3t_noact_outputs.txt b/qsirecon/tests/data/mrtrix_singleshell_ss3t_noact_outputs.txt index 763784db..878e39d2 100644 --- a/qsirecon/tests/data/mrtrix_singleshell_ss3t_noact_outputs.txt +++ b/qsirecon/tests/data/mrtrix_singleshell_ss3t_noact_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -qsirecon/sub-PNC -qsirecon/sub-PNC.html +qsirecon qsirecon qsirecon-MRtrix3_fork-SS3T_act-None qsirecon-MRtrix3_fork-SS3T_act-None/sub-PNC @@ -49,4 +46,8 @@ qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-sch qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.mif.gz qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.nii.gz qsirecon-anat/sub-PNC/dwi/sub-PNC_acq-realistic_space-T1w_desc-preproc_atlas-schaefer400_dseg.txt +qsirecon/dwiqc.json qsirecon/sub-PNC +qsirecon/sub-PNC +qsirecon/sub-PNC.html +sub-PNC diff --git a/qsirecon/tests/data/pyafq_recon_full_outputs.txt b/qsirecon/tests/data/pyafq_recon_full_outputs.txt index af33133c..54745c2b 100644 --- a/qsirecon/tests/data/pyafq_recon_full_outputs.txt +++ b/qsirecon/tests/data/pyafq_recon_full_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -sub-ABCD -qsirecon/sub-ABCD.html +qsirecon qsirecon qsirecon-PYAFQ qsirecon-PYAFQ/sub-ABCD @@ -111,4 +108,7 @@ qsirecon-PYAFQ/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap/ qsirecon-PYAFQ/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap/viz_core_bundles/sub-ABCD_acq-10per000_coordsys-RASMM_trkmethod-probCSD_recogmethod-AFQ_desc-LeftCorticospinalviz_dwi.html qsirecon-PYAFQ/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap/viz_core_bundles/sub-ABCD_acq-10per000_coordsys-RASMM_trkmethod-probCSD_recogmethod-AFQ_desc-LeftSuperiorLongitudinalviz_dwi.html qsirecon-PYAFQ/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_dwimap/viz_core_bundles/sub-ABCD_acq-10per000_coordsys-RASMM_trkmethod-probCSD_recogmethod-AFQ_desc-RightCorticospinalviz_dwi.html +qsirecon/dwiqc.json qsirecon/sub-ABCD +qsirecon/sub-ABCD.html +sub-ABCD diff --git a/qsirecon/tests/data/scalar_mapper_outputs.txt b/qsirecon/tests/data/scalar_mapper_outputs.txt index f823663b..c1e51c72 100644 --- a/qsirecon/tests/data/scalar_mapper_outputs.txt +++ b/qsirecon/tests/data/scalar_mapper_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -sub-ABCD -qsirecon/sub-ABCD.html +qsirecon qsirecon qsirecon-DIPYDKI qsirecon-DIPYDKI/sub-ABCD @@ -73,4 +70,7 @@ qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_mod qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mfp-tyy_dwimap.nii.gz qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mfp-tyz_dwimap.nii.gz qsirecon-DSIStudio/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mfp-tzz_dwimap.nii.gz -qsirecon/sub-ABCD \ No newline at end of file +qsirecon/dwiqc.json +qsirecon/sub-ABCD +qsirecon/sub-ABCD.html +sub-ABCD diff --git a/qsirecon/tests/data/tortoise_recon_outputs.txt b/qsirecon/tests/data/tortoise_recon_outputs.txt index ee7ea8a0..6fe4c50f 100644 --- a/qsirecon/tests/data/tortoise_recon_outputs.txt +++ b/qsirecon/tests/data/tortoise_recon_outputs.txt @@ -1,13 +1,10 @@ -qsirecon dataset_description.json -qsirecon/dwiqc.json logs logs/CITATION.bib logs/CITATION.html logs/CITATION.md logs/CITATION.tex -sub-ABCD -qsirecon/sub-ABCD.html +qsirecon qsirecon qsirecon-TORTOISE qsirecon-TORTOISE/sub-ABCD @@ -25,4 +22,7 @@ qsirecon-TORTOISE/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_mode qsirecon-TORTOISE/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mdp-li_dwimap.nii.gz qsirecon-TORTOISE/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mdp-rd_dwimap.nii.gz qsirecon-TORTOISE/sub-ABCD/dwi/sub-ABCD_acq-10per000_space-T1w_desc-preproc_model-tensor_mfp-AM_dwimap.nii.gz +qsirecon/dwiqc.json qsirecon/sub-ABCD +qsirecon/sub-ABCD.html +sub-ABCD