From bd3f918135556721939b16c15d8b75a9a26fb2a1 Mon Sep 17 00:00:00 2001
From: ameliecr <57177800+ameliecr@users.noreply.github.com>
Date: Fri, 4 Oct 2024 19:39:02 -0400
Subject: [PATCH] [FIX] mif2fib (#116)

* fix mif2fib to use --fib argument

* add Amelie to zenodo
---
 .zenodo.json                      | 5 +++++
 qsirecon/interfaces/converters.py | 5 ++---
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/.zenodo.json b/.zenodo.json
index 0bbecd88..6961cdac 100644
--- a/.zenodo.json
+++ b/.zenodo.json
@@ -65,6 +65,11 @@
       "affiliation": "Perelman School of Medicine, University of Pennsylvania",
       "orcid": "0000-0002-8640-668X"
     },
+    {
+      "name": "Rauland, Amelie",
+      "affiliation": "Department of Psychology, University Hospital RWTH Aachen, Germany",
+      "orcid": "0000-0002-8095-2073"
+    },
     {
       "name": "Satterthwaite, Theodore D.",
       "affiliation": "Perelman School of Medicine, University of Pennsylvania, PA, USA",
diff --git a/qsirecon/interfaces/converters.py b/qsirecon/interfaces/converters.py
index 55963013..71c72f7e 100644
--- a/qsirecon/interfaces/converters.py
+++ b/qsirecon/interfaces/converters.py
@@ -41,7 +41,6 @@ class FODtoFIBGZInputSpec(BaseInterfaceInputSpec):
     num_fibers = traits.Int(5, usedefault=True)
     unit_odf = traits.Bool(False, usedefault=True)
     fib_file = File()
-    output_fib_file = File()
 
 
 class FODtoFIBGZOutputSpec(TraitedSpec):
@@ -55,8 +54,8 @@ class FODtoFIBGZ(SimpleInterface):
     def _run_interface(self, runtime):
         mif_file = self.inputs.mif_file
         mask_file = self.inputs.mask_file
-        if isdefined(self.inputs.output_fib_file):
-            output_fib_file = self.inputs.output_fib_file
+        if isdefined(self.inputs.fib_file):
+            output_fib_file = self.inputs.fib_file
             if output_fib_file.endswith(".gz"):
                 output_fib_file = output_fib_file[:-3]
         else: