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mkdocs.yml
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site_name: HPC Core Facility Cluster Documentation
site_url: http://docs.hpc.ucdavis.edu
repo_url: https://github.com/ucdavis/hpccf-docs
copyright: Copyright © 2023-24 The Regents of the University of California, Davis
nav:
- About: index.md
- General:
- general/index.md
- Accessing the Clusters: general/access.md
- User Environment: general/environment.md
- Job Scheduler:
- scheduler/index.md
- Slurm Commands: scheduler/commands.md
- Resources: scheduler/resources.md
- Job Scripts: scheduler/jobscripts.md
- Software:
- software/index.md
- Module System: software/modules.md
- Python and Conda: software/conda.md
- R and RStudio: software/rlang.md
#- Developing Software: software/developing.md
- Clusters:
- Farm:
- farm/index.md
- Software:
- Modules: farm/software/modules.md
- Job Scheduling: farm/scheduling.md
- Resources: farm/resources.md
- Storage: farm/storage.md
- Franklin:
- franklin/index.md
- Software:
- Modules: franklin/software/modules.md
- cryo-EM: franklin/software/cryoem.md
- alphafold: franklin/software/alphafold.md
- Job Scheduling: franklin/scheduling.md
- Resources: franklin/resources.md
- Storage: farm/storage.md
markdown_extensions:
- toc:
permalink: true
- def_list
- attr_list
- admonition
- md_in_html
- footnotes
- pymdownx.arithmatex:
generic: true
- pymdownx.details
- pymdownx.emoji:
emoji_index: !!python/name:materialx.emoji.twemoji
emoji_generator: !!python/name:materialx.emoji.to_svg
- pymdownx.highlight:
anchor_linenums: true
- pymdownx.inlinehilite
- pymdownx.snippets
- pymdownx.superfences
- pymdownx.tabbed:
alternate_style: true
plugins:
- search
- git-revision-date-localized:
enable_creation_date: true
- macros:
module_name: macros
extra:
spack_modulefiles_path: spack-ucdavis/modulefiles/hpccf/franklin/
social:
- icon: material/email-edit
link: "mailto:[email protected]"
name: Email HPCCF Support
- icon: fontawesome/brands/slack
link: https://ucdavis.slack.com/archives/C053NKA88
name: "#hpc Channel on ucdavis.slack.com"
extra_css:
- stylesheets/extra.css
extra_javascript:
- javascripts/mathjax.js
- https://polyfill.io/v3/polyfill.min.js?features=es6
- https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
theme:
name: material
features:
- content.code.annotate
#- navigation.tabs
- navigation.sections
- navigation.expand
- navigation.indexes
- navigation.top
- navigation.footer
- navigation.tracking
- search.highlight
- search.share
- search.suggest
logo: assets/HPCCF-logo-dark.png
icon:
repo: fontawesome/brands/github
palette:
# Palette toggle for light mode
- scheme: ucdavis
toggle:
icon: material/brightness-7
name: Switch to dark mode
# Palette toggle for dark mode
- scheme: slate
toggle:
icon: material/brightness-4
name: Switch to light mode