From a1acfa9946124735bd68e03eaf35a3f2d4586eb0 Mon Sep 17 00:00:00 2001
From: mikejiang <mike@ozette.ai>
Date: Thu, 12 Aug 2021 16:44:11 -0700
Subject: [PATCH] update ci

---
 .github/workflows/build.yml | 59 +++++++++++++++++++------------------
 1 file changed, 30 insertions(+), 29 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 9de8eb4..763beeb 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -21,9 +21,9 @@ jobs:
       matrix:
         r: ['release', 'devel']
         config:
-          - {os: windows-latest, suffix: 'zip'}
+#           - {os: windows-latest, suffix: 'zip'} 
           - {os: macOS-latest, suffix: 'tgz'}
-          - {os: ubuntu-16.04, suffix: 'tar.gz', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+#           - {os: ubuntu-16.04, suffix: 'tar.gz', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
         isMaster:
           - ${{ contains(github.ref, 'master') }}
         exclude:
@@ -45,10 +45,10 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v1
       
-      - name: set token for cytoinstaller(and remotes) to increase github API rate limit
-        env:
-          SUPER_SECRET: ${{ secrets.CYTOINSTALLER_TOKEN }}
-        run: echo "GITHUB_TOKEN=$SUPER_SECRET" >> $GITHUB_ENV
+#       - name: set token for cytoinstaller(and remotes) to increase github API rate limit
+#         env:
+#           SUPER_SECRET: ${{ secrets.CYTOINSTALLER_TOKEN }}
+#         run: echo "GITHUB_TOKEN=$SUPER_SECRET" >> $GITHUB_ENV
  
       - name: Query dependencies
         run: |
@@ -84,15 +84,16 @@ jobs:
 
       - name: Install dependencies
         run: |
+          remotes::install_deps(dependencies = TRUE)
           remotes::install_cran(c("rcmdcheck", "devtools"))
-          remotes::install_github("RGLab/cytoinstaller")
-          cytoinstaller::cyto_install_deps(dependencies = TRUE)
+#          remotes::install_github("RGLab/cytoinstaller")
+ #         cytoinstaller::cyto_install_deps(dependencies = TRUE)
         shell: Rscript {0}
 
-      - name: check rate limit
-        run: |
-          gh::gh("GET /rate_limit")$resources$core$remaining
-        shell: Rscript {0}
+#       - name: check rate limit
+#         run: |
+#           gh::gh("GET /rate_limit")$resources$core$remaining
+#         shell: Rscript {0}
         
       - name: Check
         env:
@@ -107,22 +108,22 @@ jobs:
           name: ${{ runner.os }}-r${{ matrix.config.r }}-results
           path: check
           
-      - name: build src pkg
-        if: runner.os == 'Linux'
-        run: devtools::build()
-        shell: Rscript {0}
+#       - name: build src pkg
+#         if: runner.os == 'Linux'
+#         run: devtools::build()
+#         shell: Rscript {0}
         
-      - name: build bin pkg
-        if: runner.os != 'Linux'
-        run: devtools::build(binary = TRUE)
-        shell: Rscript {0}  
+#       - name: build bin pkg
+#         if: runner.os != 'Linux'
+#         run: devtools::build(binary = TRUE)
+#         shell: Rscript {0}  
         
-      - name: Upload Release Asset
-        uses: svenstaro/upload-release-action@v2
-        with:
-          repo_token: ${{ secrets.GITHUB_TOKEN }}
-          file: '../*.${{ matrix.config.suffix }}'
-          file_glob: true
-          tag: bioc_${{ env.bioc_ver}}
-          overwrite: true
-          body: "This is my release text"
+#       - name: Upload Release Asset
+#         uses: svenstaro/upload-release-action@v2
+#         with:
+#           repo_token: ${{ secrets.GITHUB_TOKEN }}
+#           file: '../*.${{ matrix.config.suffix }}'
+#           file_glob: true
+#           tag: bioc_${{ env.bioc_ver}}
+#           overwrite: true
+#           body: "This is my release text"