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Fix Pfam protein name and source ID mappings #12

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van-truong opened this issue Aug 27, 2024 · 1 comment
Open

Fix Pfam protein name and source ID mappings #12

van-truong opened this issue Aug 27, 2024 · 1 comment
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2.4.4 bug Something isn't working

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@van-truong
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Similar to Chris's gene ID mapping issue

From Rasika Venkatesh on 8/26/24:

I’ve noticed this with protein names as well, as a heads up. I think it’s possible that some sources (maybe PFAM?) may not include the synonyms that map to the same ID, but broadly, it might be helpful to query for alternative names when available across sources/data types in LOKI if the initial input isn’t found. Thank you both for looking into this!

@van-truong van-truong added the bug Something isn't working label Aug 27, 2024
@van-truong van-truong added enhancement New feature or request 3.0.0 and removed bug Something isn't working labels Nov 12, 2024
@AndreRico
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I’m currently waiting for the protein list, command arguments, and additional details about the problem. Once I have this information, I’ll be able to proceed with the analysis more effectively. (passed by slack)

@AndreRico AndreRico added bug Something isn't working 2.4.4 and removed enhancement New feature or request 3.0.0 labels Dec 3, 2024
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