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class RNA_DeNovoProtocolMover.de_novo_setup_from_command_line() or apply() can't run normally #100

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nadounadou opened this issue May 3, 2024 · 1 comment

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@nadounadou
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When I create an RNA_DeNovoProtocolMover() using a Python script, it stops running and throws an error with code ‘139 (interrupted by signal 11:SIGSEGV)’ either during initialization or when applying it.

This is my code:

from pyrosetta import init
init()

from pyrosetta import pose_from_pdb
from pyrosetta import rosetta

pose = pose_from_pdb('./example/7lyg.pdb') # 7lyg is an RNA

from pyrosetta.rosetta.protocols.rna.denovo.movers import RNA_DeNovoProtocolMover
rna_denovo_mover = RNA_DeNovoProtocolMover()

fasta_files = rosetta.utility.vector1_std_string()
fasta_files.append('./example/7lyg.fasta')
rna_denovo_mover.set_fasta_files(fasta_files)

rna_denovo_mover.set_minimize_rna(True)

rna_denovo_mover.de_novo_setup_from_command_line()

rna_denovo_mover.apply(pose)

My English is not good. If there is anything offensive, please forgive me. Thanks !

@nadounadou
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I have solved this problem.
You should do 'rna_denovo_mover.set_minimize_rna (True)', before 'de_novo_setup_from_command_line()' run

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