Bands not shown

[KeywanHP]

I tried to add multiple colored bands to a basemap.xml without success. It should be supported as described here.

I did this:

	<chromosome index="1" length="30000000" number="1">
		<band index="1">
			<start>0</start>
			<end>14000000</end>
			<color>0xFFFFFF</color>
		</band>
		<band index="2">
			<start>15000000</start>
			<end>30000000</end>
			<color>0xFFFF00</color>
		</band>
        </chromosome> 

and expected to see something like this:

But no colored bands were shown. I also noticed that band elements can in fact be omitted if we want to draw plain white chromosomes:

<genome>
    <chromosome index="1" length="30427671" number="1" />
    <chromosome index="2" length="19698289" number="2" />
</genome>

My conclusion: Looks as if the band information is ignored or overwritten somehow.

[marco-brandizi]

Likely, it's best to do this after the overall refactoring described in Rothamsted/knetminer#366, happening in the 202204_upgrades branch.

[Arnedeklerk]

Related to Rothamsted/knetminer#677