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Documentation second draft#6

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anitaapplegarth merged 43 commits intomainSABS-R3-Epidemiology/rEpiabm:mainfrom DocumentationSABS-R3-Epidemiology/rEpiabm:DocumentationCopy head branch name to clipboardJan 31, 2025

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Commits

Commits on Jan 23, 2025

• Jupyter formatting

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• Merge branch 'Documentation' of github.com:SABS-R3-Epidemiology/rEpiabm into Documentation

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Commits on Jan 24, 2025

• Update to Section 2 for different simulations

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• created structure within data folder

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• Andorra extract created

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• Added images and update step 1 in Jupyter notebook

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• Updated Step 1 in jupyter notebook

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Commits on Jan 27, 2025

• Corrections made to Step 1

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• folder renaming and back again

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• Jupyter notebook Step 2 written

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• New images and step 2 amendments

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Commits on Jan 28, 2025

• testing different formats in jupyter notebook

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• Check format of code boxes

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Commits on Jan 29, 2025

• Finished epigeopop draft 1

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• updated format of code blocks

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• changed note to include code

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• changed format of note code block

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• Step 1 and 2 complete

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• added toypop_example jupyter notebook

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• Amended step 1 and formatted instructions

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• Added steps 3 and 4

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• Updated Step 3

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• Formatting issues in Epigeopop corrected

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Commits on Jan 30, 2025

• Change simulation_flow_check to correct json file

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• Change to .gitignore and readme

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• Format for readme note blocks

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• try again

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• Changes to important readme block

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• try new blocks and links to sections in readme

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• attempt to get links to work in readme

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• Updated illustrations in Readme

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• Added plot information

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• formatting chages made

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• images malfunctioning, try a fix

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• Rename EpigeoPop_example.ipynb to epigeopop_example.ipynb

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• description of plots

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• Update README.md

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• Update README.md

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• Update README.md

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• spatial changes

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• Merge branch 'Documentation' of github.com:SABS-R3-Epidemiology/rEpiabm into Documentation

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Commits on Jan 31, 2025

• directory reference changes in jupyter notebooks

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• Changed user-defined variables needed in R file

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