diff --git a/.env.sample b/.env.sample index 63685bc..9d878a9 100644 --- a/.env.sample +++ b/.env.sample @@ -11,7 +11,7 @@ PREPROCESS_DB_USERNAME= # username for the source database PREPROCESS_DB_PASSWORD= # password for the source database PREPROCESS_DB_CDM_SCHEMA= # Schema name in the database to connect the OMOP CDM to PREPROCESS_SUMMARISE_LEVEL=monthly # Level to summarise record counts at (monthly or quarterly) -PREPROCESS_BUILD_CORES=4 # Number of cores to use for make in docker build +BUILD_CORES_MAKE=4 # Number of cores to use for make in docker build # Low-frequency replacement LOW_FREQUENCY_THRESHOLD=10 diff --git a/docker-compose.yml b/docker-compose.yml index 6cb7aa2..9f7a37c 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -7,7 +7,7 @@ services: # Required for running on GAE HTTP_PROXY: ${HTTP_PROXY} HTTPS_PROXY: ${HTTPS_PROXY} - CORES: ${PREPROCESS_BUILD_CORES} + CORES: ${BUILD_CORES_MAKE} image: omopcat_preprocessing:latest platform: linux/amd64 environment: @@ -37,7 +37,7 @@ services: # Required for running on GAE HTTP_PROXY: ${HTTP_PROXY} HTTPS_PROXY: ${HTTPS_PROXY} - CORES: ${PREPROCESS_BUILD_CORES} + CORES: ${BUILD_CORES_MAKE} image: omopcat:latest platform: linux/amd64 restart: unless-stopped diff --git a/public.env.sample b/public.env.sample index db20f8e..9b394e0 100644 --- a/public.env.sample +++ b/public.env.sample @@ -11,7 +11,8 @@ PREPROCESS_DB_USERNAME= # username for the source database PREPROCESS_DB_PASSWORD= # password for the source database PREPROCESS_DB_CDM_SCHEMA= # Schema name in the database to connect the OMOP CDM to PREPROCESS_SUMMARISE_LEVEL=quarterly # Level to summarise record counts at (monthly or quarterly) -PREPROCESS_BUILD_CORES=4 # Number of cores to use for make in docker build +BUILD_CORES_MAKE=4 # Number of cores to use for make in docker build + # Low-frequency replacement LOW_FREQUENCY_THRESHOLD=10 LOW_FREQUENCY_REPLACEMENT=9.99